| Clone Name | baal19o21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_477400.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2122 Score = 176 bits (89), Expect = 5e-41 Identities = 236/285 (82%) Strand = Plus / Plus Query: 278 ggcagaaaagccagtaaacattagaaacctgctgggtggcatagttgctatcattggtcg 337 |||||| ||||| |||||| ||||||| ||||||||||| || |||| ||||| |||| Sbjct: 650 ggcagataagccggtaaaccttagaaatctgctgggtggtttaattgcaatcatcagtcg 709 Query: 338 cacttgcaaaaatgatgaaattcaacaatcaaaggacactaagagtagcgtctcattctt 397 |||||||| ||||||||||| |||||||||||||| ||| ||| ||||||| Sbjct: 710 tggcggcaaaaattctgaaattcaaccgccaaaggacactaagtctagtgtcgcattctt 769 Query: 398 ggggtcaagtagtgatggagatacattcttgcatacctcagtctacgcaccaagtgctcc 457 |||||| |||| |||||||| ||||||||||| |||||||||| | ||||||||||| Sbjct: 770 agggtcaggtagcgatggagaaacattcttgcacgcctcagtctatgtgccaagtgctcc 829 Query: 458 tccattgcttgatgaagaagccttgagttacaatatttatagggttgttttagaggcaga 517 ||||||||||| |||||||| ||| ||||||| | ||||||||||| | || ||||| Sbjct: 830 accattgcttgacgaagaagctctgaattacaatgtgtatagggttgtgattgaagcaga 889 Query: 518 accaccagaatggctgcccgatagttatgctgactcgtgcatgca 562 ||||||||||||| | || |||||||||||| |||| |||||||| Sbjct: 890 accaccagaatggttacctgatagttatgctaactcatgcatgca 934 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 57 aaggatcagatccactccaaggttatgggcacgataggcaatgtcatcaactcaattgat 116 |||||| ||||||| ||||||||| ||||||||||||| |||| || |||||| ||||| Sbjct: 423 aaggatgagatccaatccaaggttttgggcacgataggggatgtgatgaactcatttgat 482 Query: 117 ccaaagtc 124 |||||||| Sbjct: 483 ccaaagtc 490
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 176 bits (89), Expect = 5e-41 Identities = 236/285 (82%) Strand = Plus / Plus Query: 278 ggcagaaaagccagtaaacattagaaacctgctgggtggcatagttgctatcattggtcg 337 |||||| ||||| |||||| ||||||| ||||||||||| || |||| ||||| |||| Sbjct: 10097337 ggcagataagccggtaaaccttagaaatctgctgggtggtttaattgcaatcatcagtcg 10097396 Query: 338 cacttgcaaaaatgatgaaattcaacaatcaaaggacactaagagtagcgtctcattctt 397 |||||||| ||||||||||| |||||||||||||| ||| ||| ||||||| Sbjct: 10097397 tggcggcaaaaattctgaaattcaaccgccaaaggacactaagtctagtgtcgcattctt 10097456 Query: 398 ggggtcaagtagtgatggagatacattcttgcatacctcagtctacgcaccaagtgctcc 457 |||||| |||| |||||||| ||||||||||| |||||||||| | ||||||||||| Sbjct: 10097457 agggtcaggtagcgatggagaaacattcttgcacgcctcagtctatgtgccaagtgctcc 10097516 Query: 458 tccattgcttgatgaagaagccttgagttacaatatttatagggttgttttagaggcaga 517 ||||||||||| |||||||| ||| ||||||| | ||||||||||| | || ||||| Sbjct: 10097517 accattgcttgacgaagaagctctgaattacaatgtgtatagggttgtgattgaagcaga 10097576 Query: 518 accaccagaatggctgcccgatagttatgctgactcgtgcatgca 562 ||||||||||||| | || |||||||||||| |||| |||||||| Sbjct: 10097577 accaccagaatggttacctgatagttatgctaactcatgcatgca 10097621 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 57 aaggatcagatccactccaaggttatgggcacgataggcaatgtcatcaactcaattgat 116 |||||| ||||||| ||||||||| ||||||||||||| |||| || |||||| ||||| Sbjct: 10097110 aaggatgagatccaatccaaggttttgggcacgataggggatgtgatgaactcatttgat 10097169 Query: 117 ccaaagtc 124 |||||||| Sbjct: 10097170 ccaaagtc 10097177
>dbj|AP005172.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0002J01 Length = 130152 Score = 176 bits (89), Expect = 5e-41 Identities = 236/285 (82%) Strand = Plus / Plus Query: 278 ggcagaaaagccagtaaacattagaaacctgctgggtggcatagttgctatcattggtcg 337 |||||| ||||| |||||| ||||||| ||||||||||| || |||| ||||| |||| Sbjct: 70013 ggcagataagccggtaaaccttagaaatctgctgggtggtttaattgcaatcatcagtcg 70072 Query: 338 cacttgcaaaaatgatgaaattcaacaatcaaaggacactaagagtagcgtctcattctt 397 |||||||| ||||||||||| |||||||||||||| ||| ||| ||||||| Sbjct: 70073 tggcggcaaaaattctgaaattcaaccgccaaaggacactaagtctagtgtcgcattctt 70132 Query: 398 ggggtcaagtagtgatggagatacattcttgcatacctcagtctacgcaccaagtgctcc 457 |||||| |||| |||||||| ||||||||||| |||||||||| | ||||||||||| Sbjct: 70133 agggtcaggtagcgatggagaaacattcttgcacgcctcagtctatgtgccaagtgctcc 70192 Query: 458 tccattgcttgatgaagaagccttgagttacaatatttatagggttgttttagaggcaga 517 ||||||||||| |||||||| ||| ||||||| | ||||||||||| | || ||||| Sbjct: 70193 accattgcttgacgaagaagctctgaattacaatgtgtatagggttgtgattgaagcaga 70252 Query: 518 accaccagaatggctgcccgatagttatgctgactcgtgcatgca 562 ||||||||||||| | || |||||||||||| |||| |||||||| Sbjct: 70253 accaccagaatggttacctgatagttatgctaactcatgcatgca 70297 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 57 aaggatcagatccactccaaggttatgggcacgataggcaatgtcatcaactcaattgat 116 |||||| ||||||| ||||||||| ||||||||||||| |||| || |||||| ||||| Sbjct: 69786 aaggatgagatccaatccaaggttttgggcacgataggggatgtgatgaactcatttgat 69845 Query: 117 ccaaagtc 124 |||||||| Sbjct: 69846 ccaaagtc 69853
>dbj|AK102876.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112D24, full insert sequence Length = 2122 Score = 176 bits (89), Expect = 5e-41 Identities = 236/285 (82%) Strand = Plus / Plus Query: 278 ggcagaaaagccagtaaacattagaaacctgctgggtggcatagttgctatcattggtcg 337 |||||| ||||| |||||| ||||||| ||||||||||| || |||| ||||| |||| Sbjct: 650 ggcagataagccggtaaaccttagaaatctgctgggtggtttaattgcaatcatcagtcg 709 Query: 338 cacttgcaaaaatgatgaaattcaacaatcaaaggacactaagagtagcgtctcattctt 397 |||||||| ||||||||||| |||||||||||||| ||| ||| ||||||| Sbjct: 710 tggcggcaaaaattctgaaattcaaccgccaaaggacactaagtctagtgtcgcattctt 769 Query: 398 ggggtcaagtagtgatggagatacattcttgcatacctcagtctacgcaccaagtgctcc 457 |||||| |||| |||||||| ||||||||||| |||||||||| | ||||||||||| Sbjct: 770 agggtcaggtagcgatggagaaacattcttgcacgcctcagtctatgtgccaagtgctcc 829 Query: 458 tccattgcttgatgaagaagccttgagttacaatatttatagggttgttttagaggcaga 517 ||||||||||| |||||||| ||| ||||||| | ||||||||||| | || ||||| Sbjct: 830 accattgcttgacgaagaagctctgaattacaatgtgtatagggttgtgattgaagcaga 889 Query: 518 accaccagaatggctgcccgatagttatgctgactcgtgcatgca 562 ||||||||||||| | || |||||||||||| |||| |||||||| Sbjct: 890 accaccagaatggttacctgatagttatgctaactcatgcatgca 934 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 57 aaggatcagatccactccaaggttatgggcacgataggcaatgtcatcaactcaattgat 116 |||||| ||||||| ||||||||| ||||||||||||| |||| || |||||| ||||| Sbjct: 423 aaggatgagatccaatccaaggttttgggcacgataggggatgtgatgaactcatttgat 482 Query: 117 ccaaagtc 124 |||||||| Sbjct: 483 ccaaagtc 490
>gb|AC105968.14| Mus musculus chromosome 18, clone RP23-265P4, complete sequence Length = 210819 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 237 tatgaatgccctgatgactattggga 262 |||||||||||||||||||||||||| Sbjct: 203011 tatgaatgccctgatgactattggga 202986
>gb|AC132351.3| Mus musculus BAC clone RP24-95F24 from chromosome 18, complete sequence Length = 186726 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 237 tatgaatgccctgatgactattggga 262 |||||||||||||||||||||||||| Sbjct: 98051 tatgaatgccctgatgactattggga 98026
>gb|AC155948.12| Mus musculus 6 BAC RP24-98H19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 176892 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 gaactgcagagggcagaaaag 287 ||||||||||||||||||||| Sbjct: 53716 gaactgcagagggcagaaaag 53696
>ref|XM_422072.1| PREDICTED: Gallus gallus similar to Ku (p70/p80) protein (LOC424222), mRNA Length = 2692 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 41 agctgaaagcagtctcaaggatcagatc 68 ||||||||||||| |||||||| ||||| Sbjct: 2498 agctgaaagcagtatcaaggataagatc 2471
>gb|AC137150.11| Mus musculus chromosome 18, clone RP23-342A15, complete sequence Length = 213513 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 274 agagggcagaaaagccagtaaacattag 301 ||||||| ||||||||||||| |||||| Sbjct: 158509 agagggctgaaaagccagtaatcattag 158482
>gb|AC147566.2| Mus musculus BAC clone RP23-106L10 from chromosome 14, complete sequence Length = 174050 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 aaatgatgaaattcaacaat 366 |||||||||||||||||||| Sbjct: 26 aaatgatgaaattcaacaat 7
>gb|AC153360.6| Mus musculus BAC clone RP23-321I6 from chromosome 10, complete sequence Length = 233014 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 ccagtaaacattagaaacct 307 |||||||||||||||||||| Sbjct: 158896 ccagtaaacattagaaacct 158915
>emb|AL137118.20| Human DNA sequence from clone RP11-108P5 on chromosome 13q14.12-21.1 Contains the CYSLTR2 gene for cysteinyl leukotriene receptor 2 (CYSLT2, CYSLT2R), complete sequence Length = 162446 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 caaggatcagatccactcca 75 |||||||||||||||||||| Sbjct: 155703 caaggatcagatccactcca 155684
>emb|AL135933.11| Human DNA sequence from clone RP4-774E4 on chromosome 11p13-14.2 Contains a pseudogene similar to ribosomal protein L7a, STSs and GSSs, complete sequence Length = 111135 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tgggaaacagctggaaatgc 160 |||||||||||||||||||| Sbjct: 56189 tgggaaacagctggaaatgc 56170
>emb|AL031684.14|HS917N8 Human DNA sequence from clone RP5-917N8 on chromosome 20p11.22-12.1 Contains STSs and GSSs, complete sequence Length = 143712 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 cacttgcaaaaatgatgaaa 357 |||||||||||||||||||| Sbjct: 63051 cacttgcaaaaatgatgaaa 63070
>gb|AC079059.10| Homo sapiens chromosome 18, clone RP11-281L12, complete sequence Length = 145993 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 agcaagcatgggaaacagctggaa 156 |||||| ||||||||||||||||| Sbjct: 65659 agcaaggatgggaaacagctggaa 65682
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome Length = 3523383 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 aaaaatgatgaaattcaaca 364 |||||||||||||||||||| Sbjct: 2370532 aaaaatgatgaaattcaaca 2370513
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 gccgtttgattttgatggtg 216 |||||||||||||||||||| Sbjct: 137955 gccgtttgattttgatggtg 137936
>gb|AC087173.5| Homo sapiens chromosome 8, clone RP11-713C9, complete sequence Length = 160250 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 aaaaatgatgaaattcaaca 364 |||||||||||||||||||| Sbjct: 116558 aaaaatgatgaaattcaaca 116577
>gb|AC068388.7| Homo sapiens chromosome 3, clone RP11-296M9, complete sequence Length = 148372 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tgggaaacagctggaaatgc 160 |||||||||||||||||||| Sbjct: 83900 tgggaaacagctggaaatgc 83881
>gb|AC021594.9| Homo sapiens, clone RP11-154H12, complete sequence Length = 162336 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 agcaagcatgggaaacagctggaa 156 |||||| ||||||||||||||||| Sbjct: 73289 agcaaggatgggaaacagctggaa 73312
>gb|AC087366.5| Homo sapiens chromosome 8, clone RP11-621J21, complete sequence Length = 160454 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 aaaaatgatgaaattcaaca 364 |||||||||||||||||||| Sbjct: 4515 aaaaatgatgaaattcaaca 4534
>ref|XM_628533.1| Cryptosporidium parvum Iowa II RNA polymerase beta subunit (cgd7_3720), partial mRNA Length = 3534 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 aaaaatgatgaaattcaaca 364 |||||||||||||||||||| Sbjct: 34 aaaaatgatgaaattcaaca 53
>emb|BX119963.5| Zebrafish DNA sequence from clone DKEY-6A5 in linkage group 4, complete sequence Length = 229125 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 cgtacaaggagctgaaagca 51 |||||||||||||||||||| Sbjct: 209442 cgtacaaggagctgaaagca 209423
>emb|BX119962.3| Zebrafish DNA sequence from clone CH211-203L9 in linkage group 19, complete sequence Length = 190702 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 ttatagggttgttttagagg 513 |||||||||||||||||||| Sbjct: 118838 ttatagggttgttttagagg 118857
>gb|AC164541.3| Mus musculus chromosome 1, clone RP24-172N7, complete sequence Length = 161969 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 gttgttttagaggcagaacc 520 |||||||||||||||||||| Sbjct: 29115 gttgttttagaggcagaacc 29134
>gb|AC105073.16| Mus musculus chromosome 1, clone RP23-288J11, complete sequence Length = 210509 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 gttgttttagaggcagaacc 520 |||||||||||||||||||| Sbjct: 56789 gttgttttagaggcagaacc 56770
>gb|AC147641.3| Mus musculus BAC clone RP23-43L22 from 14, complete sequence Length = 247999 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 aaatgatgaaattcaacaat 366 |||||||||||||||||||| Sbjct: 118264 aaatgatgaaattcaacaat 118245 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,341,455 Number of Sequences: 3902068 Number of extensions: 5341455 Number of successful extensions: 99260 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99125 Number of HSP's gapped (non-prelim): 135 length of query: 568 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 545 effective length of database: 17,143,297,704 effective search space: 9343097248680 effective search space used: 9343097248680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)