ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal19n18 |
|---|---|
| Clone Library Name | barley_pub |
>ATG9A_PONPY (Q5RCS0) Autophagy-related protein 9A (APG9-like 1)| Length = 839 Score = 35.0 bits (79), Expect = 0.17 Identities = 25/88 (28%), Positives = 35/88 (39%) Frame = +1 Query: 214 VGDIASHVQHEIQYGGDNPLASPRSQYASQSTQATVHMPNTSSQQPSASLFALGNPGLTQ 393 VGD S Q +++ G P+ A Q+ + + S FA+ NPG Sbjct: 515 VGDTCSFAQMDVRQHGH-----PQWLSAGQTEASVYQQAEDGKTELSLMHFAITNPGWQP 569 Query: 394 PKNSAVFSNALSSPVRRGLQPYHLDQGG 477 P+ S F L V+R L QGG Sbjct: 570 PRESTAFLGFLKEQVQRDGAAASLAQGG 597
>ATG9A_HUMAN (Q7Z3C6) Autophagy-related protein 9A (APG9-like 1)| Length = 839 Score = 35.0 bits (79), Expect = 0.17 Identities = 25/88 (28%), Positives = 35/88 (39%) Frame = +1 Query: 214 VGDIASHVQHEIQYGGDNPLASPRSQYASQSTQATVHMPNTSSQQPSASLFALGNPGLTQ 393 VGD S Q +++ G P+ A Q+ + + S FA+ NPG Sbjct: 515 VGDTCSFAQMDVRQHGH-----PQWLSAGQTEASVYQQAEDGKTELSLMHFAITNPGWQP 569 Query: 394 PKNSAVFSNALSSPVRRGLQPYHLDQGG 477 P+ S F L V+R L QGG Sbjct: 570 PRESTAFLGFLKEQVQRDGAAASLAQGG 597
>ATG9A_RAT (Q5FWU3) Autophagy-related protein 9A (APG9-like 1)| Length = 839 Score = 33.1 bits (74), Expect = 0.66 Identities = 24/88 (27%), Positives = 34/88 (38%) Frame = +1 Query: 214 VGDIASHVQHEIQYGGDNPLASPRSQYASQSTQATVHMPNTSSQQPSASLFALGNPGLTQ 393 VGD S Q +++ G P+ Q+ + + S FA+ NPG Sbjct: 515 VGDTCSFAQMDVRQHGH-----PQWLSGGQTEASVYQQAEDGKTELSLMHFAITNPGWQP 569 Query: 394 PKNSAVFSNALSSPVRRGLQPYHLDQGG 477 P+ S F L V+R L QGG Sbjct: 570 PRESTAFLGFLKEQVQRDGAAAGLAQGG 597
>ATG9A_BOVIN (Q3T904) Autophagy-related protein 9A (APG9-like 1) (Autophagy| protein 9) Length = 839 Score = 33.1 bits (74), Expect = 0.66 Identities = 24/88 (27%), Positives = 34/88 (38%) Frame = +1 Query: 214 VGDIASHVQHEIQYGGDNPLASPRSQYASQSTQATVHMPNTSSQQPSASLFALGNPGLTQ 393 VGD S Q +++ G P+ Q+ + + S FA+ NPG Sbjct: 515 VGDTCSFAQMDVRQHGH-----PQWLSGGQTEASVYQQAEDGKTELSLMHFAITNPGWQP 569 Query: 394 PKNSAVFSNALSSPVRRGLQPYHLDQGG 477 P+ S F L V+R L QGG Sbjct: 570 PRESTAFLGFLKEQVQRDGAAAGLAQGG 597
>HGS_MOUSE (Q99LI8) Hepatocyte growth factor-regulated tyrosine kinase| substrate Length = 775 Score = 32.0 bits (71), Expect = 1.5 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 8/74 (10%) Frame = +1 Query: 268 PLASPRSQYASQSTQATVHMPNTSSQQPS--------ASLFALGNPGLTQPKNSAVFSNA 423 P +P +Q A Q+ P SS QP+ AS P ++QP ++ Sbjct: 636 PTGAPGAQAAPQAQAGPTTSPAYSSYQPTPTPGYQSVASQAPQSLPAISQPPQTSNIGYM 695 Query: 424 LSSPVRRGLQPYHL 465 S P+ G QPY++ Sbjct: 696 GSQPMSMGYQPYNM 709
>HGS_HUMAN (O14964) Hepatocyte growth factor-regulated tyrosine kinase| substrate (Protein pp110) (Hrs) Length = 777 Score = 32.0 bits (71), Expect = 1.5 Identities = 21/66 (31%), Positives = 29/66 (43%) Frame = +1 Query: 268 PLASPRSQYASQSTQATVHMPNTSSQQPSASLFALGNPGLTQPKNSAVFSNALSSPVRRG 447 P ASP Y+S T N +SQ P + P ++QP S+ S V G Sbjct: 654 PTASPA--YSSYQPTPTAGYQNVASQAPQSL------PAISQPPQSSTMGYMGSQSVSMG 705 Query: 448 LQPYHL 465 QPY++ Sbjct: 706 YQPYNM 711
>TOP6B_PYRAE (Q8ZVM0) Type II DNA topoisomerase VI subunit B (EC 5.99.1.3)| (TopoVI-B) Length = 527 Score = 32.0 bits (71), Expect = 1.5 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = -1 Query: 418 WKRPPSSWAASTLGFLVQISSQMVAGC-LCWAYAR*PECFGLHIVILE 278 W+RP S W + L++I ++ + G +A R PE +G H I+E Sbjct: 301 WRRPRSDWLSPAGAELLEIGAKAILGAEAVFAITRKPESYGGHPFIVE 348
>HGS_RAT (Q9JJ50) Hepatocyte growth factor-regulated tyrosine kinase| substrate (SNAP-25-interacting protein Hrs-2) Length = 776 Score = 31.6 bits (70), Expect = 1.9 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 8/74 (10%) Frame = +1 Query: 268 PLASPRSQYASQSTQATVHMPNTSSQQPS--------ASLFALGNPGLTQPKNSAVFSNA 423 P +P +Q A Q+ P SS QP+ AS P ++QP ++ Sbjct: 637 PAGAPGAQAAPQAQAGPTTNPAYSSYQPTPTPGYQNVASQAPQSLPAISQPPQTSNIGYM 696 Query: 424 LSSPVRRGLQPYHL 465 S P+ G QPY++ Sbjct: 697 GSQPMSMGYQPYNM 710
>UBQL1_RAT (Q9JJP9) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)| (PLIC-1) Length = 582 Score = 31.6 bits (70), Expect = 1.9 Identities = 34/107 (31%), Positives = 46/107 (42%), Gaps = 8/107 (7%) Frame = +1 Query: 196 NGLRLTVGDIASHVQH--EIQYGGDNPLAS----PRSQYASQS--TQATVHMPNTSSQQP 351 N LR DI + + + Q+GG NP AS P S +Q T+ +PN + Q Sbjct: 261 NALRRMYTDIQEPMLNAAQEQFGG-NPFASLVSSPSSAEGTQPSRTENRDPLPNPWAPQT 319 Query: 352 SASLFALGNPGLTQPKNSAVFSNALSSPVRRGLQPYHLDQGGDAGYF 492 S A G+ G T S NA S+P +G +L G A F Sbjct: 320 PQSSPASGSTGSTTNTVSTSAGNATSTPAGQGTSGPNLVPGAGASMF 366
>GUAC_HELPY (O25525) GMP reductase (EC 1.7.1.7) (Guanosine 5'-monophosphate| oxidoreductase) (Guanosine monophosphate reductase) Length = 327 Score = 30.4 bits (67), Expect = 4.2 Identities = 18/56 (32%), Positives = 27/56 (48%) Frame = +1 Query: 118 GQKLSFQAGERHAMEKLYEWILRQHENGLRLTVGDIASHVQHEIQYGGDNPLASPR 285 G FQ GE+ +E WI QH+ L+ T+ ++ +Q I Y G L + R Sbjct: 257 GSASEFQKGEKKNIEGKKIWI--QHKGSLKDTLVEMHQDLQSSISYAGGRDLEAIR 310
>GUAC_HELPJ (Q9ZKZ2) GMP reductase (EC 1.7.1.7) (Guanosine 5'-monophosphate| oxidoreductase) (Guanosine monophosphate reductase) Length = 325 Score = 30.4 bits (67), Expect = 4.2 Identities = 18/56 (32%), Positives = 27/56 (48%) Frame = +1 Query: 118 GQKLSFQAGERHAMEKLYEWILRQHENGLRLTVGDIASHVQHEIQYGGDNPLASPR 285 G FQ GE+ +E WI QH+ L+ T+ ++ +Q I Y G L + R Sbjct: 255 GSASEFQKGEKKNIEGKKIWI--QHKGSLKNTLIEMHQDLQSSISYAGGRDLEAIR 308
>K1HB_HUMAN (Q14525) Keratin, type I cuticular Ha3-II (Hair keratin, type I| Ha3-II) Length = 404 Score = 30.4 bits (67), Expect = 4.2 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +1 Query: 202 LRLTVG--DIASHVQHEIQYGGDNPLASPRSQYASQSTQATVHMPNTSSQ 345 LR TV +I QH ++Y +N L ++Y+SQ +Q + N SQ Sbjct: 275 LRRTVNALEIELQAQHNLRYSLENTLTESEARYSSQLSQVQSLITNVESQ 324
>RX_HUMAN (Q9Y2V3) Retinal homeobox protein Rx (Retina and anterior neural| fold homeobox protein) Length = 346 Score = 30.4 bits (67), Expect = 4.2 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Frame = +3 Query: 426 IQPRAPGPATIPSGSGWGCRLLCERLGPRAESHGFKRL---IHGHAFGQP 566 +QP AP P + P G G+G + + PR S RL H A G+P Sbjct: 293 LQPLAPPPPSYPCGPGFGDKFPLDEADPRNSSIAALRLKAKEHIQAIGKP 342
>JIP3_HUMAN (Q9UPT6) C-jun-amino-terminal kinase-interacting protein 3| (JNK-interacting protein 3) (JIP-3) (JNK MAP kinase scaffold protein 3) (Mitogen-activated protein kinase 8-interacting protein 3) Length = 1334 Score = 30.0 bits (66), Expect = 5.6 Identities = 13/41 (31%), Positives = 16/41 (39%) Frame = -1 Query: 517 SARGPSRSQSSLHPHPDPDGMVAGPGARGWIVRWKRPPSSW 395 S GP SS P P+P G G G+ W + W Sbjct: 937 SENGPEPDSSSTRPEPEPSGDPTGAGSSAAPTMWLGAQNGW 977
>ZBT34_HUMAN (Q8NCN2) Zinc finger and BTB domain-containing protein 34| Length = 500 Score = 30.0 bits (66), Expect = 5.6 Identities = 31/110 (28%), Positives = 43/110 (39%) Frame = +1 Query: 193 ENGLRLTVGDIASHVQHEIQYGGDNPLASPRSQYASQSTQATVHMPNTSSQQPSASLFAL 372 E + + VG S +QH Y SQ ASQ T + + S+ PS S+ + Sbjct: 265 EQVVAVNVGSYGSVLQHAYSY----------SQAASQPTNVSEAFGSLSNSSPSRSMLSC 314 Query: 373 GNPGLTQPKNSAVFSNALSSPVRRGLQPYHLDQGGDAGYFANGLAREPNP 522 G + K ALS + LQ L QG D+ N E +P Sbjct: 315 FRGGRARQK------RALSVHLHSDLQ--GLVQGSDSEAMMNNPGYESSP 356
>ATG2_NEUCR (Q871L5) Autophagy-related protein 2| Length = 2011 Score = 29.6 bits (65), Expect = 7.2 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 3/96 (3%) Frame = +1 Query: 109 AMGGQKLSFQAGERHAMEKLYE--WILRQHENGLRLTVGDIASHVQHEIQYGGDNPLASP 282 ++GG +S + A++ L + + +R E+ L + + + E G +PL++P Sbjct: 283 SVGGLDMSISPDQMEALDMLAQSQYEVRDSEDALNIPYESDTQYPEAEENVAGSSPLSTP 342 Query: 283 R-SQYASQSTQATVHMPNTSSQQPSASLFALGNPGL 387 R S Y T N++ Q L++ G+ Sbjct: 343 RASMYQEHDTPMLQDHANSAIMQHQPELWSSYERGI 378
>MURB_DECAR (Q47K28) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 337 Score = 29.3 bits (64), Expect = 9.5 Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 1/116 (0%) Frame = +3 Query: 246 DSVWRRQSVGLS-KITICKPKHSGYRAYAQHKQPATICELICTRKPRVDAAQELGGLFQR 422 DS++++Q L+ +I I +A+ + + A I + + TRK +AQ++ Sbjct: 161 DSLFKQQGWHLNGRIAITSVIFRLAKAWQPNMRYADIAQELATRKIAAPSAQDIATAVIA 220 Query: 423 TIQPRAPGPATIPSGSGWGCRLLCERLGPRAESHGFKRLIHGHAFGQPSSRLLLSS 590 Q + P PA P+ + + E + A + + L + QP R+ L++ Sbjct: 221 VRQRKLPDPAVTPNAGSFFHNPVVEAIQAEALADAYPTL---PRYPQPDGRVKLAA 273
>Y3980_PSEAE (Q51470) Hypothetical UPF0004 protein PA3980| Length = 446 Score = 29.3 bits (64), Expect = 9.5 Identities = 19/54 (35%), Positives = 23/54 (42%) Frame = +3 Query: 333 HKQPATICELICTRKPRVDAAQELGGLFQRTIQPRAPGPATIPSGSGWGCRLLC 494 H+ P I TRKP+VD + F R +PR GP S GC C Sbjct: 109 HRLPEMIDAARSTRKPQVDVSFPEIEKFDRLPEPRVDGPTAFVSVME-GCSKYC 161
>CLAP1_HUMAN (Q7Z460) CLIP-associating protein 1 (Cytoplasmic linker-associated| protein 1) (Multiple asters homolog 1) Length = 1538 Score = 29.3 bits (64), Expect = 9.5 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 12/67 (17%) Frame = +1 Query: 349 PSASLFALGNPGL------------TQPKNSAVFSNALSSPVRRGLQPYHLDQGGDAGYF 492 P F LG PG T A ++AL PVRR +PY + DA Sbjct: 771 PPLDRFGLGQPGRIPGSVNAMRVLSTSTDLEAAVADALKKPVRRRYEPYGMYSDDDANSD 830 Query: 493 ANGLARE 513 A+ + E Sbjct: 831 ASSVCSE 837 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.130 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,607,221 Number of Sequences: 219361 Number of extensions: 1910546 Number of successful extensions: 4686 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4496 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4683 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
