>SC61B_ARATH (P38389) Protein transport protein Sec61 beta subunit|
          Length = 82

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 33/40 (82%), Positives = 35/40 (87%)
 Frame = +2

Query: 188 MLQFYTDEAAGRKMSPNAVLIMSIGFIAVVAVLHVFGKLY 307
           MLQFYTD+A G K+SPN VLIMSIGFIA VAVLHV GKLY
Sbjct: 40  MLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGKLY 79

>SC61B_SCHPO (O43002) Prpbable protein transport protein sec61 beta subunit|
          Length = 102

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 18/41 (43%), Positives = 31/41 (75%)
 Frame = +2

Query: 188 MLQFYTDEAAGRKMSPNAVLIMSIGFIAVVAVLHVFGKLYR 310
           +L+ YTDEA+G K+ P  V+++S+GFIA V +LH+  ++ +
Sbjct: 57  LLKLYTDEASGFKVDPVVVMVLSVGFIASVFLLHIVARILK 97

>SC61B_MOUSE (Q9CQS8) Protein transport protein Sec61 beta subunit|
          Length = 95

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 20/42 (47%), Positives = 31/42 (73%)
 Frame = +2

Query: 188 MLQFYTDEAAGRKMSPNAVLIMSIGFIAVVAVLHVFGKLYRT 313
           M +FYT+++ G K+ P  VL+MS+ FIA V +LH++GK  R+
Sbjct: 54  MWRFYTEDSPGLKVGPVPVLVMSLLFIAAVFMLHIWGKYTRS 95

>SC61B_PONPY (Q5RB31) Protein transport protein Sec61 beta subunit|
          Length = 95

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 20/42 (47%), Positives = 31/42 (73%)
 Frame = +2

Query: 188 MLQFYTDEAAGRKMSPNAVLIMSIGFIAVVAVLHVFGKLYRT 313
           M +FYT+++ G K+ P  VL+MS+ FIA V +LH++GK  R+
Sbjct: 54  MWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 95

>SC61B_HUMAN (P60468) Protein transport protein Sec61 beta subunit|
          Length = 95

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 20/42 (47%), Positives = 31/42 (73%)
 Frame = +2

Query: 188 MLQFYTDEAAGRKMSPNAVLIMSIGFIAVVAVLHVFGKLYRT 313
           M +FYT+++ G K+ P  VL+MS+ FIA V +LH++GK  R+
Sbjct: 54  MWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 95

>SC61B_CANFA (P60467) Protein transport protein Sec61 beta subunit|
          Length = 95

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 20/42 (47%), Positives = 31/42 (73%)
 Frame = +2

Query: 188 MLQFYTDEAAGRKMSPNAVLIMSIGFIAVVAVLHVFGKLYRT 313
           M +FYT+++ G K+ P  VL+MS+ FIA V +LH++GK  R+
Sbjct: 54  MWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 95

>SC61B_YARLI (Q9HFC7) Protein transport protein SEC61 beta subunit|
          Length = 91

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 18/39 (46%), Positives = 27/39 (69%)
 Frame = +2

Query: 188 MLQFYTDEAAGRKMSPNAVLIMSIGFIAVVAVLHVFGKL 304
           ML+ YTDE+ G K+ P  V+++S+GFI  V  LH+  K+
Sbjct: 47  MLKLYTDESQGLKVDPVVVMVLSLGFIFSVVALHILAKV 85

>SC6B1_YEAST (P52870) Protein transport protein SEC61 beta 1 subunit|
          Length = 82

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = +2

Query: 188 MLQFYTDEAAGRKMSPNAVLIMSIGFIAVVAVLHVFGKL 304
           +L+ Y+DEA G ++ P  VL +++GFI  V  LHV  K+
Sbjct: 39  ILKIYSDEATGLRVDPLVVLFLAVGFIFSVVALHVISKV 77

>SC61B_KLULA (Q8J2P4) Protein transport protein SEC61 beta subunit|
          Length = 88

 Score = 37.7 bits (86), Expect = 0.015
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +2

Query: 188 MLQFYTDEAAGRKMSPNAVLIMSIGFIAVVAVLHVFGKL 304
           +L+ YTDEA G ++ P  VL +++ F+  V  LHV  K+
Sbjct: 45  ILKLYTDEANGLRVDPLVVLFLAVAFVFSVVALHVVAKV 83

>SC6B2_YEAST (P52871) Protein transport protein SEC61 beta 2 subunit|
          Length = 88

 Score = 35.8 bits (81), Expect = 0.059
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = +2

Query: 188 MLQFYTDEAAGRKMSPNAVLIMSIGFIAVVAVLHVFGK 301
           +L+ YTDEA G ++    VL +S+GFI  V  LH+  K
Sbjct: 46  ILKLYTDEANGFRVDSLVVLFLSVGFIFSVIALHLLTK 83

>YGL0_YEAST (P53137) Hypothetical 72.0 kDa protein in TAF60-MLC1 intergenic|
           region
          Length = 624

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 470 FDKTNTLQRFDNNISVLYGKSFQDPTVI 387
           +  + TL  +DNNI ++  K F+DPT+I
Sbjct: 334 YQLSQTLLAYDNNIELVTNKIFEDPTII 361

>SECG_PYRKO (Q5JDK7) Preprotein translocase secG subunit (Protein transport|
           protein SEC61 beta subunit homolog)
          Length = 56

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = +2

Query: 188 MLQFYTDEAAGRKMSPNAVLIMSIGFIAVVAVLHVFG 298
           +++F+ ++    K+SP  V+ +++  IA   +LH+FG
Sbjct: 15  LMRFFDEDTRAVKVSPKGVIALTLLLIAFEFILHMFG 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,426,214
Number of Sequences: 219361
Number of extensions: 991339
Number of successful extensions: 2498
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2496
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)