No.
Definition
Score (bits)
E Value
1 dbj|AK104878.1| Oryza sativa (japonica cultivar-group) cDNA clon...
533
e-148
2 dbj|AK066022.1| Oryza sativa (japonica cultivar-group) cDNA clon...
533
e-148
3 ref|XM_464736.1| Oryza sativa (japonica cultivar-group), mRNA
450
e-123
4 dbj|AK059462.1| Oryza sativa (japonica cultivar-group) cDNA clon...
224
3e-55
5 gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome ...
121
3e-24
6 gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome...
121
3e-24
7 dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...
121
3e-24
8 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
115
2e-22
9 dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic D...
115
2e-22
10 dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic D...
115
2e-22
11 ref|XM_425915.1| PREDICTED: Gallus gallus similar to TIR domain ...
42
2.2
12 gb|AC112943.12| Mus musculus chromosome 16, clone RP23-424C7, co...
42
2.2
13 emb|Z97206.1|HS359N14 Human DNA sequence from clone RP3-359N14 o...
42
2.2
14 emb|AL606500.8| Human DNA sequence from clone RP11-274N19 on chr...
42
2.2
15 gb|AC155833.10| Mus musculus 10 BAC RP24-405O10 (Roswell Park Ca...
42
2.2
16 emb|AL732493.17| Mouse DNA sequence from clone RP23-358F6 on chr...
42
2.2
17 gb|AF526137.1| Peromyscus maniculatus microsatellite BW4-164 seq...
40
8.6
18 gb|AC165278.4| Mus musculus chromosome 15, clone RP23-250O18, co...
40
8.6
19 gb|AC111110.21| Mus musculus chromosome 1, clone RP23-201B13, co...
40
8.6
20 emb|AL731585.5| Oryza sativa genomic DNA, chromosome 4, BAC clon...
40
8.6
21 emb|AL109920.15|HSDJ335E1 Human DNA sequence from clone RP3-335E...
40
8.6
22 emb|AL731614.4|OSJN00260 Oryza sativa genomic DNA, chromosome 4,...
40
8.6
23 gb|AC106865.4| Homo sapiens BAC clone RP11-153M7 from 4, complet...
40
8.6
24 gb|AC079349.6| Homo sapiens BAC clone RP11-436A7 from 4, complet...
40
8.6
25 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...
40
8.6
26 emb|BX088718.7| Zebrafish DNA sequence from clone DKEY-185E18, c...
40
8.6
27 dbj|AK066988.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
8.6
28 dbj|AK065786.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
8.6
29 emb|AL591913.14| Mouse DNA sequence from clone RP23-120A4 on chr...
40
8.6
>gb|AC108759.2 | Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
OSJNBa0072P02, complete sequence
Length = 157488
Score = 121 bits (61), Expect = 3e-24
Identities = 115/132 (87%), Gaps = 1/132 (0%)
Strand = Plus / Minus
Query: 39 aatctattaccactntctaccagcttctgaagaacaaggtggaagatgtggcagctgctc 98
|||||||||| ||| | |||||| |||| || ||||||||||||||| | |||| |||||
Sbjct: 156457 aatctattactacttt-taccagattctcaaaaacaaggtggaagatctagcagttgctc 156399
Query: 99 gtgggaaaaagggcctaggggatggcactgttgggatgttttcttggcttgttattgcag 158
| || || ||||| ||||||||||| |||||||||||||| || ||||||| ||||||||
Sbjct: 156398 gcggtaagaagggtctaggggatggtactgttgggatgttctcctggcttggtattgcag 156339
Query: 159 ctgttgctgggt 170
||||||||||||
Sbjct: 156338 ctgttgctgggt 156327
Score = 107 bits (54), Expect = 4e-20
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 381 tccgggaagtctatcgtgaatcaggcataagtggattctggaaaggacttattccgacac 440
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 154687 tccgggaggtctaccgtgaatcaggcataagaggattctggaaaggacttattccaacac 154628
Query: 441 taattatggt 450
||||||||||
Sbjct: 154627 taattatggt 154618
Score = 89.7 bits (45), Expect = 1e-14
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 448 ggtatgcaatccatcaattcagtttatgatatatgaaacgctgtcaaagcgtctccagtc 507
|||||| |||||||||||||| |||||||| |||||||| || |||||||||||| |||
Sbjct: 154534 ggtatgtaatccatcaattcaatttatgatctatgaaacattggcaaagcgtctccggtc 154475
Query: 508 gaagcggtctggaaagcgattccccaagaagaacatcactgctatggaggtat 560
||| | ||||||||| | |||| || |||||| | ||||||||||||||||
Sbjct: 154474 aaagagatctggaaaggaactcccaaaaaagaaccttactgctatggaggtat 154422
Score = 79.8 bits (40), Expect = 1e-11
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 555 aggtatttttattaggtgcaatagcaaagctgggagctacctgttgtgacctacccgttg 614
||||||| ||||||||||||||||||||||| ||||||| |||||||||| ||||| |||
Sbjct: 153805 aggtattcttattaggtgcaatagcaaagctcggagcta-ctgttgtgacatacccattg 153747
Query: 615 ttagtggt 622
|||||||
Sbjct: 153746 ctagtggt 153739
Score = 71.9 bits (36), Expect = 2e-09
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 168 ggtcaatcaatgttcttcttacaattccaatatgggttcttgtcacacgtatgcag 223
|||||||||||||||||||||| | ||||||||||||||| || || |||||||||
Sbjct: 155795 ggtcaatcaatgttcttcttaccaatccaatatgggttctcgtgactcgtatgcag 155740
Score = 71.9 bits (36), Expect = 2e-09
Identities = 131/160 (81%), Gaps = 2/160 (1%)
Strand = Plus / Minus
Query: 221 cagacacatacgcaggcagaaaggaaggtgatagagtccaagagggagcttttgcttaag 280
||||||||||| || ||||||| |||| | || ||||| || | |||||||||||| |||
Sbjct: 155267 cagacacatacacaagcagaaaagaagatcatggagtctaaaaaggagcttttgctgaag 155208
Query: 281 gaaatacccagggtcaattcaatggatg-ctcatattcttaaggatagattagcaaaact 339
|| | | |||| ||||||||| || | |||| ||||||||||| || || |||||
Sbjct: 155207 gatgttgctagggccaattcaatagaggtctca-attcttaaggacaggttgtataaact 155149
Query: 340 tgattctgaaaaacctcgcccatatggcacaattcaagcg 379
|||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 155148 tgattctgaaaagcctcgtccatatgggacaattcaagcg 155109
>gb|AC137595.2 | Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
OSJNBa0094K23, complete sequence
Length = 167482
Score = 121 bits (61), Expect = 3e-24
Identities = 115/132 (87%), Gaps = 1/132 (0%)
Strand = Plus / Minus
Query: 39 aatctattaccactntctaccagcttctgaagaacaaggtggaagatgtggcagctgctc 98
|||||||||| ||| | |||||| |||| || ||||||||||||||| | |||| |||||
Sbjct: 32638 aatctattactacttt-taccagattctcaaaaacaaggtggaagatctagcagttgctc 32580
Query: 99 gtgggaaaaagggcctaggggatggcactgttgggatgttttcttggcttgttattgcag 158
| || || ||||| ||||||||||| |||||||||||||| || ||||||| ||||||||
Sbjct: 32579 gcggtaagaagggtctaggggatggtactgttgggatgttctcctggcttggtattgcag 32520
Query: 159 ctgttgctgggt 170
||||||||||||
Sbjct: 32519 ctgttgctgggt 32508
Score = 107 bits (54), Expect = 4e-20
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 381 tccgggaagtctatcgtgaatcaggcataagtggattctggaaaggacttattccgacac 440
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 30868 tccgggaggtctaccgtgaatcaggcataagaggattctggaaaggacttattccaacac 30809
Query: 441 taattatggt 450
||||||||||
Sbjct: 30808 taattatggt 30799
Score = 89.7 bits (45), Expect = 1e-14
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 448 ggtatgcaatccatcaattcagtttatgatatatgaaacgctgtcaaagcgtctccagtc 507
|||||| |||||||||||||| |||||||| |||||||| || |||||||||||| |||
Sbjct: 30715 ggtatgtaatccatcaattcaatttatgatctatgaaacattggcaaagcgtctccggtc 30656
Query: 508 gaagcggtctggaaagcgattccccaagaagaacatcactgctatggaggtat 560
||| | ||||||||| | |||| || |||||| | ||||||||||||||||
Sbjct: 30655 aaagagatctggaaaggaactcccaaaaaagaaccttactgctatggaggtat 30603
Score = 79.8 bits (40), Expect = 1e-11
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 555 aggtatttttattaggtgcaatagcaaagctgggagctacctgttgtgacctacccgttg 614
||||||| ||||||||||||||||||||||| ||||||| |||||||||| ||||| |||
Sbjct: 29986 aggtattcttattaggtgcaatagcaaagctcggagcta-ctgttgtgacatacccattg 29928
Query: 615 ttagtggt 622
|||||||
Sbjct: 29927 ctagtggt 29920
Score = 71.9 bits (36), Expect = 2e-09
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 168 ggtcaatcaatgttcttcttacaattccaatatgggttcttgtcacacgtatgcag 223
|||||||||||||||||||||| | ||||||||||||||| || || |||||||||
Sbjct: 31976 ggtcaatcaatgttcttcttaccaatccaatatgggttctcgtgactcgtatgcag 31921
Score = 71.9 bits (36), Expect = 2e-09
Identities = 131/160 (81%), Gaps = 2/160 (1%)
Strand = Plus / Minus
Query: 221 cagacacatacgcaggcagaaaggaaggtgatagagtccaagagggagcttttgcttaag 280
||||||||||| || ||||||| |||| | || ||||| || | |||||||||||| |||
Sbjct: 31448 cagacacatacacaagcagaaaagaagatcatggagtctaaaaaggagcttttgctgaag 31389
Query: 281 gaaatacccagggtcaattcaatggatg-ctcatattcttaaggatagattagcaaaact 339
|| | | |||| ||||||||| || | |||| ||||||||||| || || |||||
Sbjct: 31388 gatgttgctagggccaattcaatagaggtctca-attcttaaggacaggttgtataaact 31330
Query: 340 tgattctgaaaaacctcgcccatatggcacaattcaagcg 379
|||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 31329 tgattctgaaaagcctcgtccatatgggacaattcaagcg 31290
>dbj|AP008215.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 121 bits (61), Expect = 3e-24
Identities = 115/132 (87%), Gaps = 1/132 (0%)
Strand = Plus / Minus
Query: 39 aatctattaccactntctaccagcttctgaagaacaaggtggaagatgtggcagctgctc 98
|||||||||| ||| | |||||| |||| || ||||||||||||||| | |||| |||||
Sbjct: 19437231 aatctattactacttt-taccagattctcaaaaacaaggtggaagatctagcagttgctc 19437173
Query: 99 gtgggaaaaagggcctaggggatggcactgttgggatgttttcttggcttgttattgcag 158
| || || ||||| ||||||||||| |||||||||||||| || ||||||| ||||||||
Sbjct: 19437172 gcggtaagaagggtctaggggatggtactgttgggatgttctcctggcttggtattgcag 19437113
Query: 159 ctgttgctgggt 170
||||||||||||
Sbjct: 19437112 ctgttgctgggt 19437101
Score = 107 bits (54), Expect = 4e-20
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 381 tccgggaagtctatcgtgaatcaggcataagtggattctggaaaggacttattccgacac 440
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 19435461 tccgggaggtctaccgtgaatcaggcataagaggattctggaaaggacttattccaacac 19435402
Query: 441 taattatggt 450
||||||||||
Sbjct: 19435401 taattatggt 19435392
Score = 89.7 bits (45), Expect = 1e-14
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 448 ggtatgcaatccatcaattcagtttatgatatatgaaacgctgtcaaagcgtctccagtc 507
|||||| |||||||||||||| |||||||| |||||||| || |||||||||||| |||
Sbjct: 19435308 ggtatgtaatccatcaattcaatttatgatctatgaaacattggcaaagcgtctccggtc 19435249
Query: 508 gaagcggtctggaaagcgattccccaagaagaacatcactgctatggaggtat 560
||| | ||||||||| | |||| || |||||| | ||||||||||||||||
Sbjct: 19435248 aaagagatctggaaaggaactcccaaaaaagaaccttactgctatggaggtat 19435196
Score = 79.8 bits (40), Expect = 1e-11
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 555 aggtatttttattaggtgcaatagcaaagctgggagctacctgttgtgacctacccgttg 614
||||||| ||||||||||||||||||||||| ||||||| |||||||||| ||||| |||
Sbjct: 19434579 aggtattcttattaggtgcaatagcaaagctcggagcta-ctgttgtgacatacccattg 19434521
Query: 615 ttagtggt 622
|||||||
Sbjct: 19434520 ctagtggt 19434513
Score = 71.9 bits (36), Expect = 2e-09
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 168 ggtcaatcaatgttcttcttacaattccaatatgggttcttgtcacacgtatgcag 223
|||||||||||||||||||||| | ||||||||||||||| || || |||||||||
Sbjct: 19436569 ggtcaatcaatgttcttcttaccaatccaatatgggttctcgtgactcgtatgcag 19436514
Score = 71.9 bits (36), Expect = 2e-09
Identities = 131/160 (81%), Gaps = 2/160 (1%)
Strand = Plus / Minus
Query: 221 cagacacatacgcaggcagaaaggaaggtgatagagtccaagagggagcttttgcttaag 280
||||||||||| || ||||||| |||| | || ||||| || | |||||||||||| |||
Sbjct: 19436041 cagacacatacacaagcagaaaagaagatcatggagtctaaaaaggagcttttgctgaag 19435982
Query: 281 gaaatacccagggtcaattcaatggatg-ctcatattcttaaggatagattagcaaaact 339
|| | | |||| ||||||||| || | |||| ||||||||||| || || |||||
Sbjct: 19435981 gatgttgctagggccaattcaatagaggtctca-attcttaaggacaggttgtataaact 19435923
Query: 340 tgattctgaaaaacctcgcccatatggcacaattcaagcg 379
|||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 19435922 tgattctgaaaagcctcgtccatatgggacaattcaagcg 19435883
>dbj|AP008208.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 115 bits (58), Expect = 2e-22
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 381 tccgggaagtctatcgtgaatcaggcataagtggattctggaaaggacttattccgacac 440
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7021239 tccgggaggtctaccgtgaatcaggcataagaggattctggaaaggacttattccgacac 7021298
Query: 441 taattatggt 450
||||||||||
Sbjct: 7021299 taattatggt 7021308
Score = 113 bits (57), Expect = 7e-22
Identities = 114/132 (86%), Gaps = 1/132 (0%)
Strand = Plus / Plus
Query: 39 aatctattaccactntctaccagcttctgaagaacaaggtggaagatgtggcagctgctc 98
|||||||||| ||| | |||||| |||| || ||||||||||||||| | |||| |||||
Sbjct: 7019123 aatctattactacttt-taccagattctcaaaaacaaggtggaagatctagcagttgctc 7019181
Query: 99 gtgggaaaaagggcctaggggatggcactgttgggatgttttcttggcttgttattgcag 158
| || || ||||| ||||||||||| || ||||||||||| || ||||||| ||||||||
Sbjct: 7019182 gcggtaagaagggtctaggggatggtaccgttgggatgttctcctggcttggtattgcag 7019241
Query: 159 ctgttgctgggt 170
||||||||||||
Sbjct: 7019242 ctgttgctgggt 7019253
Score = 87.7 bits (44), Expect = 4e-14
Identities = 133/160 (83%), Gaps = 2/160 (1%)
Strand = Plus / Plus
Query: 221 cagacacatacgcaggcagaaaggaaggtgatagagtccaagagggagcttttgcttaag 280
|||||||||||||| ||||||| |||| | || ||||| || | |||||||||||| |||
Sbjct: 7020642 cagacacatacgcaagcagaaaagaagatcatggagtctaaaaaggagcttttgctgaag 7020701
Query: 281 gaaatacccagggtcaattcaatggatg-ctcatattcttaaggatagattagcaaaact 339
|| | | |||| ||||||||| || | |||| |||||||||||||| || |||||
Sbjct: 7020702 gatgttgctagggccaattcaatagaggtctca-attcttaaggataggttgtataaact 7020760
Query: 340 tgattctgaaaaacctcgcccatatggcacaattcaagcg 379
|||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 7020761 tgattctgaaaagcctcgtccatatgggacaattcaagcg 7020800
Score = 81.8 bits (41), Expect = 3e-12
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 448 ggtatgcaatccatcaattcagtttatgatatatgaaacgctgtcaaagcgtctccagtc 507
|||||| ||||||||||| || |||||||| |||||||| || |||||||||||| |||
Sbjct: 7021391 ggtatgtaatccatcaatacaatttatgatctatgaaacattggcaaagcgtctccggtc 7021450
Query: 508 gaagcggtctggaaagcgattccccaagaagaacatcactgctatggaggtat 560
||| | ||||||||| | |||| || |||||| | ||||||||||||||||
Sbjct: 7021451 aaagagatctggaaaggaactcccaaaaaagaaccttactgctatggaggtat 7021503
Score = 79.8 bits (40), Expect = 1e-11
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 555 aggtatttttattaggtgcaatagcaaagctgggagctacctgttgtgacctacccgttg 614
||||||| ||||||||||||||||||||||| ||||||| |||||||||| ||||| |||
Sbjct: 7022126 aggtattcttattaggtgcaatagcaaagctcggagcta-ctgttgtgacatacccattg 7022184
Query: 615 ttagtggt 622
|||||||
Sbjct: 7022185 ctagtggt 7022192
Score = 71.9 bits (36), Expect = 2e-09
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 168 ggtcaatcaatgttcttcttacaattccaatatgggttcttgtcacacgtatgcag 223
|||||||||||||||||||||| | ||||||||||||||| || || |||||||||
Sbjct: 7020122 ggtcaatcaatgttcttcttaccaatccaatatgggttctcgtgactcgtatgcag 7020177
>dbj|AP005003.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0495C02
Length = 151467
Score = 115 bits (58), Expect = 2e-22
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 381 tccgggaagtctatcgtgaatcaggcataagtggattctggaaaggacttattccgacac 440
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 24658 tccgggaggtctaccgtgaatcaggcataagaggattctggaaaggacttattccgacac 24717
Query: 441 taattatggt 450
||||||||||
Sbjct: 24718 taattatggt 24727
Score = 113 bits (57), Expect = 7e-22
Identities = 114/132 (86%), Gaps = 1/132 (0%)
Strand = Plus / Plus
Query: 39 aatctattaccactntctaccagcttctgaagaacaaggtggaagatgtggcagctgctc 98
|||||||||| ||| | |||||| |||| || ||||||||||||||| | |||| |||||
Sbjct: 22542 aatctattactacttt-taccagattctcaaaaacaaggtggaagatctagcagttgctc 22600
Query: 99 gtgggaaaaagggcctaggggatggcactgttgggatgttttcttggcttgttattgcag 158
| || || ||||| ||||||||||| || ||||||||||| || ||||||| ||||||||
Sbjct: 22601 gcggtaagaagggtctaggggatggtaccgttgggatgttctcctggcttggtattgcag 22660
Query: 159 ctgttgctgggt 170
||||||||||||
Sbjct: 22661 ctgttgctgggt 22672
Score = 87.7 bits (44), Expect = 4e-14
Identities = 133/160 (83%), Gaps = 2/160 (1%)
Strand = Plus / Plus
Query: 221 cagacacatacgcaggcagaaaggaaggtgatagagtccaagagggagcttttgcttaag 280
|||||||||||||| ||||||| |||| | || ||||| || | |||||||||||| |||
Sbjct: 24061 cagacacatacgcaagcagaaaagaagatcatggagtctaaaaaggagcttttgctgaag 24120
Query: 281 gaaatacccagggtcaattcaatggatg-ctcatattcttaaggatagattagcaaaact 339
|| | | |||| ||||||||| || | |||| |||||||||||||| || |||||
Sbjct: 24121 gatgttgctagggccaattcaatagaggtctca-attcttaaggataggttgtataaact 24179
Query: 340 tgattctgaaaaacctcgcccatatggcacaattcaagcg 379
|||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 24180 tgattctgaaaagcctcgtccatatgggacaattcaagcg 24219
Score = 81.8 bits (41), Expect = 3e-12
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 448 ggtatgcaatccatcaattcagtttatgatatatgaaacgctgtcaaagcgtctccagtc 507
|||||| ||||||||||| || |||||||| |||||||| || |||||||||||| |||
Sbjct: 24810 ggtatgtaatccatcaatacaatttatgatctatgaaacattggcaaagcgtctccggtc 24869
Query: 508 gaagcggtctggaaagcgattccccaagaagaacatcactgctatggaggtat 560
||| | ||||||||| | |||| || |||||| | ||||||||||||||||
Sbjct: 24870 aaagagatctggaaaggaactcccaaaaaagaaccttactgctatggaggtat 24922
Score = 79.8 bits (40), Expect = 1e-11
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 555 aggtatttttattaggtgcaatagcaaagctgggagctacctgttgtgacctacccgttg 614
||||||| ||||||||||||||||||||||| ||||||| |||||||||| ||||| |||
Sbjct: 25545 aggtattcttattaggtgcaatagcaaagctcggagcta-ctgttgtgacatacccattg 25603
Query: 615 ttagtggt 622
|||||||
Sbjct: 25604 ctagtggt 25611
Score = 71.9 bits (36), Expect = 2e-09
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 168 ggtcaatcaatgttcttcttacaattccaatatgggttcttgtcacacgtatgcag 223
|||||||||||||||||||||| | ||||||||||||||| || || |||||||||
Sbjct: 23541 ggtcaatcaatgttcttcttaccaatccaatatgggttctcgtgactcgtatgcag 23596
>dbj|AP004779.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0470A03
Length = 133167
Score = 115 bits (58), Expect = 2e-22
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 381 tccgggaagtctatcgtgaatcaggcataagtggattctggaaaggacttattccgacac 440
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 114861 tccgggaggtctaccgtgaatcaggcataagaggattctggaaaggacttattccgacac 114920
Query: 441 taattatggt 450
||||||||||
Sbjct: 114921 taattatggt 114930
Score = 113 bits (57), Expect = 7e-22
Identities = 114/132 (86%), Gaps = 1/132 (0%)
Strand = Plus / Plus
Query: 39 aatctattaccactntctaccagcttctgaagaacaaggtggaagatgtggcagctgctc 98
|||||||||| ||| | |||||| |||| || ||||||||||||||| | |||| |||||
Sbjct: 112745 aatctattactacttt-taccagattctcaaaaacaaggtggaagatctagcagttgctc 112803
Query: 99 gtgggaaaaagggcctaggggatggcactgttgggatgttttcttggcttgttattgcag 158
| || || ||||| ||||||||||| || ||||||||||| || ||||||| ||||||||
Sbjct: 112804 gcggtaagaagggtctaggggatggtaccgttgggatgttctcctggcttggtattgcag 112863
Query: 159 ctgttgctgggt 170
||||||||||||
Sbjct: 112864 ctgttgctgggt 112875
Score = 87.7 bits (44), Expect = 4e-14
Identities = 133/160 (83%), Gaps = 2/160 (1%)
Strand = Plus / Plus
Query: 221 cagacacatacgcaggcagaaaggaaggtgatagagtccaagagggagcttttgcttaag 280
|||||||||||||| ||||||| |||| | || ||||| || | |||||||||||| |||
Sbjct: 114264 cagacacatacgcaagcagaaaagaagatcatggagtctaaaaaggagcttttgctgaag 114323
Query: 281 gaaatacccagggtcaattcaatggatg-ctcatattcttaaggatagattagcaaaact 339
|| | | |||| ||||||||| || | |||| |||||||||||||| || |||||
Sbjct: 114324 gatgttgctagggccaattcaatagaggtctca-attcttaaggataggttgtataaact 114382
Query: 340 tgattctgaaaaacctcgcccatatggcacaattcaagcg 379
|||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 114383 tgattctgaaaagcctcgtccatatgggacaattcaagcg 114422
Score = 81.8 bits (41), Expect = 3e-12
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 448 ggtatgcaatccatcaattcagtttatgatatatgaaacgctgtcaaagcgtctccagtc 507
|||||| ||||||||||| || |||||||| |||||||| || |||||||||||| |||
Sbjct: 115013 ggtatgtaatccatcaatacaatttatgatctatgaaacattggcaaagcgtctccggtc 115072
Query: 508 gaagcggtctggaaagcgattccccaagaagaacatcactgctatggaggtat 560
||| | ||||||||| | |||| || |||||| | ||||||||||||||||
Sbjct: 115073 aaagagatctggaaaggaactcccaaaaaagaaccttactgctatggaggtat 115125
Score = 79.8 bits (40), Expect = 1e-11
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 555 aggtatttttattaggtgcaatagcaaagctgggagctacctgttgtgacctacccgttg 614
||||||| ||||||||||||||||||||||| ||||||| |||||||||| ||||| |||
Sbjct: 115748 aggtattcttattaggtgcaatagcaaagctcggagcta-ctgttgtgacatacccattg 115806
Query: 615 ttagtggt 622
|||||||
Sbjct: 115807 ctagtggt 115814
Score = 71.9 bits (36), Expect = 2e-09
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 168 ggtcaatcaatgttcttcttacaattccaatatgggttcttgtcacacgtatgcag 223
|||||||||||||||||||||| | ||||||||||||||| || || |||||||||
Sbjct: 113744 ggtcaatcaatgttcttcttaccaatccaatatgggttctcgtgactcgtatgcag 113799
>emb|AL606500.8 | Human DNA sequence from clone RP11-274N19 on chromosome 1 Contains the 3'
end of the KCNN3 gene for potassium intermediate/small
conductance calcium-activated channel, subfamily N, member
3, a novel gene and the 5' end of the ADAR gene for
adenosine deaminase, RNA-specific, complete sequence
Length = 173014
Score = 42.1 bits (21), Expect = 2.2
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 63 ttctgaagaacaaggtggaag 83
|||||||||||||||||||||
Sbjct: 101475 ttctgaagaacaaggtggaag 101455
>emb|AL591913.14 | Mouse DNA sequence from clone RP23-120A4 on chromosome 15, complete
sequence
Length = 196812
Score = 40.1 bits (20), Expect = 8.6
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 278 aaggaaatacccagggtcaattca 301
||||||| ||||||||||||||||
Sbjct: 10700 aaggaaagacccagggtcaattca 10677
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,511,348
Number of Sequences: 3902068
Number of extensions: 5511348
Number of successful extensions: 99398
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99197
Number of HSP's gapped (non-prelim): 193
length of query: 630
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 607
effective length of database: 17,143,297,704
effective search space: 10405981706328
effective search space used: 10405981706328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)