ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal19m18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB219969.1| Triticum aestivum WAP2 mRNA for aspartic protein... 145 3e-32
2gb|AC131746.3| Mus musculus BAC clone RP23-62F20 from 3, complet... 42 0.30
3gb|AC153661.4| Mus musculus BAC clone RP23-152L5 from chromosome... 42 0.30
4ref|XM_475576.1| Oryza sativa (japonica cultivar-group), predic... 38 4.6
5emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete ... 38 4.6
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.6
7dbj|AK065206.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 4.6

>dbj|AB219969.1| Triticum aestivum WAP2 mRNA for aspartic proteinase, complete cds
          Length = 1560

 Score =  145 bits (73), Expect = 3e-32
 Identities = 96/104 (92%)
 Strand = Plus / Plus

                                                                       
Query: 1   accatggggcagaggctcctcttantggtgaccacttgtctgtgggccatttcatgcgcc 60
           |||||||||||||||||||| ||| |||||||||| |||||||||||  |||||||||||
Sbjct: 20  accatggggcagaggctcctattactggtgaccacctgtctgtgggctctttcatgcgcc 79

                                                       
Query: 61  gtgccgcaccatgcttcctcgcgtgacggactgctaaggatcaa 104
           ||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct: 80  gtgccgcaccacgcttcctcgcgtgatggactgcttaggatcaa 123



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>gb|AC131746.3| Mus musculus BAC clone RP23-62F20 from 3, complete sequence
          Length = 201620

 Score = 42.1 bits (21), Expect = 0.30
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 33    cacttgtctgtgggccatttc 53
             |||||||||||||||||||||
Sbjct: 87402 cacttgtctgtgggccatttc 87382



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>gb|AC153661.4| Mus musculus BAC clone RP23-152L5 from chromosome 3, complete sequence
          Length = 203476

 Score = 42.1 bits (21), Expect = 0.30
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 33     cacttgtctgtgggccatttc 53
              |||||||||||||||||||||
Sbjct: 186088 cacttgtctgtgggccatttc 186068



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>ref|XM_475576.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1491

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 57/70 (81%)
 Strand = Plus / Plus

                                                                      
Query: 11 agaggctcctcttantggtgaccacttgtctgtgggccatttcatgcgccgtgccgcacc 70
          |||||| ||||||  ||||||| |||||| |||||||  | ||||| ||| ||| ||  |
Sbjct: 8  agaggcacctcttgttggtgacaacttgtttgtgggctctgtcatgtgccttgctgcttc 67

                    
Query: 71 atgcttcctc 80
          ||||||||||
Sbjct: 68 atgcttcctc 77



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>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29
          Length = 293050

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 61     gtgccgcaccatgcttcct 79
              |||||||||||||||||||
Sbjct: 174221 gtgccgcaccatgcttcct 174239



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 57/70 (81%)
 Strand = Plus / Plus

                                                                           
Query: 11      agaggctcctcttantggtgaccacttgtctgtgggccatttcatgcgccgtgccgcacc 70
               |||||| ||||||  ||||||| |||||| |||||||  | ||||| ||| ||| ||  |
Sbjct: 2115264 agaggcacctcttgttggtgacaacttgtttgtgggctctgtcatgtgccttgctgcttc 2115323

                         
Query: 71      atgcttcctc 80
               ||||||||||
Sbjct: 2115324 atgcttcctc 2115333



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>dbj|AK065206.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002F13, full
           insert sequence
          Length = 1900

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 57/70 (81%)
 Strand = Plus / Plus

                                                                       
Query: 11  agaggctcctcttantggtgaccacttgtctgtgggccatttcatgcgccgtgccgcacc 70
           |||||| ||||||  ||||||| |||||| |||||||  | ||||| ||| ||| ||  |
Sbjct: 160 agaggcacctcttgttggtgacaacttgtttgtgggctctgtcatgtgccttgctgcttc 219

                     
Query: 71  atgcttcctc 80
           ||||||||||
Sbjct: 220 atgcttcctc 229


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 523,551
Number of Sequences: 3902068
Number of extensions: 523551
Number of successful extensions: 33776
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33759
Number of HSP's gapped (non-prelim): 17
length of query: 104
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 83
effective length of database: 17,151,101,840
effective search space: 1423541452720
effective search space used: 1423541452720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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