ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal19l13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ022951.1| Triticum aestivum stress responsive protein mRNA,... 307 7e-81
2ref|XM_479573.1| Oryza sativa (japonica cultivar-group), mRNA 101 8e-19
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 101 8e-19
4dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic D... 101 8e-19
5emb|Y08988.1|OSR40G3 O.sativa osr40g3 gene 101 8e-19
6dbj|AK072989.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 2e-16
7gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 2.7
8ref|XM_962998.1| PREDICTED: Tribolium castaneum similar to CG150... 40 2.7
9emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete ... 40 2.7
10emb|BX640423.1| Bordetella parapertussis strain 12822, complete ... 40 2.7
11emb|BX640411.1| Bordetella pertussis strain Tohama I, complete g... 40 2.7
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
13dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 2.7
14emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 2.7 
>gb|DQ022951.1| Triticum aestivum stress responsive protein mRNA, complete cds
          Length = 846

 Score =  307 bits (155), Expect = 7e-81
 Identities = 185/195 (94%)
 Strand = Plus / Plus

                                                                       
Query: 14  ctactaccgcgagagctacggctcgtacgggatggcgacgccggggtacgcgcccccggt 73
           |||||||||||||| |||||||  |||||||||||||||||| || |||||| | |||||
Sbjct: 28  ctactaccgcgagacctacggcgggtacgggatggcgacgcccggttacgcggcgccggt 87

                                                                       
Query: 74  gccgtacggcatgtcgcaggtgaacgtcgacggcaactgcggcggtcggccgatgccgcc 133
           ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 88  gccgtacggcatgtcgcaggtgaacatcgacggcaactgcggcgggcggccgatgccgcc 147

                                                                       
Query: 134 gcagcctacggtgaagatctactgccgcgccaaccccaactacgccatgtccgtgcgcaa 193
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gcagcccacggtgaagatctactgccgcgccaaccccaactacgccatgtccgtgcgcaa 207

                          
Query: 194 cggcaaggtggtgct 208
           |||||||||||||||
Sbjct: 208 cggcaaggtggtgct 222
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>ref|XM_479573.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 988

 Score =  101 bits (51), Expect = 8e-19
 Identities = 135/163 (82%)
 Strand = Plus / Plus

                                                                       
Query: 46  tggcgacgccggggtacgcgcccccggtgccgtacggcatgtcgcaggtgaacgtcgacg 105
           ||||||||||||||||||||||  ||| ||||||||| ||||||||||||||| |||| |
Sbjct: 164 tggcgacgccggggtacgcgccggcggcgccgtacgggatgtcgcaggtgaacatcgagg 223

                                                                       
Query: 106 gcaactgcggcggtcggccgatgccgccgcagcctacggtgaagatctactgccgcgcca 165
           | ||| |  | ||  || || ||||||||||||| ||||||||| | |||||||| || |
Sbjct: 224 ggaacgggtgtggcaggacgctgccgccgcagccgacggtgaaggtgtactgccgggcga 283

                                                      
Query: 166 accccaactacgccatgtccgtgcgcaacggcaaggtggtgct 208
           |||| |||||||| ||| | | ||| ||||||  |||||||||
Sbjct: 284 acccgaactacgcgatgacggcgcggaacggcgcggtggtgct 326
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  101 bits (51), Expect = 8e-19
 Identities = 135/163 (82%)
 Strand = Plus / Plus

                                                                            
Query: 46       tggcgacgccggggtacgcgcccccggtgccgtacggcatgtcgcaggtgaacgtcgacg 105
                ||||||||||||||||||||||  ||| ||||||||| ||||||||||||||| |||| |
Sbjct: 28955459 tggcgacgccggggtacgcgccggcggcgccgtacgggatgtcgcaggtgaacatcgagg 28955518

                                                                            
Query: 106      gcaactgcggcggtcggccgatgccgccgcagcctacggtgaagatctactgccgcgcca 165
                | ||| |  | ||  || || ||||||||||||| ||||||||| | |||||||| || |
Sbjct: 28955519 ggaacgggtgtggcaggacgctgccgccgcagccgacggtgaaggtgtactgccgggcga 28955578

                                                           
Query: 166      accccaactacgccatgtccgtgcgcaacggcaaggtggtgct 208
                |||| |||||||| ||| | | ||| ||||||  |||||||||
Sbjct: 28955579 acccgaactacgcgatgacggcgcggaacggcgcggtggtgct 28955621
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>dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0060O17
          Length = 180015

 Score =  101 bits (51), Expect = 8e-19
 Identities = 135/163 (82%)
 Strand = Plus / Plus

                                                                         
Query: 46    tggcgacgccggggtacgcgcccccggtgccgtacggcatgtcgcaggtgaacgtcgacg 105
             ||||||||||||||||||||||  ||| ||||||||| ||||||||||||||| |||| |
Sbjct: 72996 tggcgacgccggggtacgcgccggcggcgccgtacgggatgtcgcaggtgaacatcgagg 73055

                                                                         
Query: 106   gcaactgcggcggtcggccgatgccgccgcagcctacggtgaagatctactgccgcgcca 165
             | ||| |  | ||  || || ||||||||||||| ||||||||| | |||||||| || |
Sbjct: 73056 ggaacgggtgtggcaggacgctgccgccgcagccgacggtgaaggtgtactgccgggcga 73115

                                                        
Query: 166   accccaactacgccatgtccgtgcgcaacggcaaggtggtgct 208
             |||| |||||||| ||| | | ||| ||||||  |||||||||
Sbjct: 73116 acccgaactacgcgatgacggcgcggaacggcgcggtggtgct 73158
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>emb|Y08988.1|OSR40G3 O.sativa osr40g3 gene
          Length = 1531

 Score =  101 bits (51), Expect = 8e-19
 Identities = 135/163 (82%)
 Strand = Plus / Plus

                                                                       
Query: 46  tggcgacgccggggtacgcgcccccggtgccgtacggcatgtcgcaggtgaacgtcgacg 105
           ||||||||||||||||||||||  ||| ||||||||| ||||||||||||||| |||| |
Sbjct: 699 tggcgacgccggggtacgcgccggcggcgccgtacgggatgtcgcaggtgaacatcgagg 758

                                                                       
Query: 106 gcaactgcggcggtcggccgatgccgccgcagcctacggtgaagatctactgccgcgcca 165
           | ||| |  | ||  || || ||||||||||||| ||||||||| | |||||||| || |
Sbjct: 759 ggaacgggtgtggcaggacgctgccgccgcagccgacggtgaaggtgtactgccgggcga 818

                                                      
Query: 166 accccaactacgccatgtccgtgcgcaacggcaaggtggtgct 208
           |||| |||||||| ||| | | ||| ||||||  |||||||||
Sbjct: 819 acccgaactacgcgatgacggcgcggaacggcgcggtggtgct 861
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>dbj|AK072989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145K15, full
           insert sequence
          Length = 987

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 134/163 (82%)
 Strand = Plus / Plus

                                                                       
Query: 46  tggcgacgccggggtacgcgcccccggtgccgtacggcatgtcgcaggtgaacgtcgacg 105
           ||||||||||||||||||||||  ||| ||||||||| ||||||||||||| | |||| |
Sbjct: 163 tggcgacgccggggtacgcgccggcggcgccgtacgggatgtcgcaggtgagcatcgagg 222

                                                                       
Query: 106 gcaactgcggcggtcggccgatgccgccgcagcctacggtgaagatctactgccgcgcca 165
           | ||| |  | ||  || || ||||||||||||| ||||||||| | |||||||| || |
Sbjct: 223 ggaacgggtgtggcaggacgctgccgccgcagccgacggtgaaggtgtactgccgggcga 282

                                                      
Query: 166 accccaactacgccatgtccgtgcgcaacggcaaggtggtgct 208
           |||| |||||||| ||| | | ||| ||||||  |||||||||
Sbjct: 283 acccgaactacgcgatgacggcgcggaacggcgcggtggtgct 325
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 185    cgtgcgcaacggcaaggtggtgct 208
              ||||||| ||||||||||||||||
Sbjct: 778919 cgtgcgcgacggcaaggtggtgct 778896
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>ref|XM_962998.1| PREDICTED: Tribolium castaneum similar to CG15013-PA, isoform A
           (LOC656469), mRNA
          Length = 1836

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 53  gccggggtacgcgcccccgg 72
           ||||||||||||||||||||
Sbjct: 135 gccggggtacgcgcccccgg 154
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>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16
          Length = 347356

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   cgcaacggcaaggtggtgct 208
             ||||||||||||||||||||
Sbjct: 23975 cgcaacggcaaggtggtgct 23956
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>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14
          Length = 348251

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   cgcaacggcaaggtggtgct 208
             ||||||||||||||||||||
Sbjct: 23976 cgcaacggcaaggtggtgct 23957
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>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12
          Length = 346359

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   cgcaacggcaaggtggtgct 208
             ||||||||||||||||||||
Sbjct: 23976 cgcaacggcaaggtggtgct 23957
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 186      gtgcgcaacggcaaggtggt 205
                ||||||||||||||||||||
Sbjct: 11769857 gtgcgcaacggcaaggtggt 11769876
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 116     cggtcggccgatgccgccgcagcc 139
               ||||| ||||||||||||||||||
Sbjct: 4404469 cggtcagccgatgccgccgcagcc 4404446
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 124     cgatgccgccgcagcctacg 143
               ||||||||||||||||||||
Sbjct: 3537048 cgatgccgccgcagcctacg 3537067


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 736,242
Number of Sequences: 3902068
Number of extensions: 736242
Number of successful extensions: 54981
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54391
Number of HSP's gapped (non-prelim): 590
length of query: 210
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 188
effective length of database: 17,147,199,772
effective search space: 3223673557136
effective search space used: 3223673557136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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