ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal19k21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196374.1| Oryza sativa (japonica cultivar-group) putative methionyl-tRNA synthetase (OSJNBa0050N08.15), mRNA Length = 1791 Score = 375 bits (189), Expect = e-101 Identities = 261/286 (91%) Strand = Plus / Plus Query: 87 ggtgccggtggcggngcggcggaacgtgctggtgacgagcgcgctgccgtacgtgaacaa 146 ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 24 ggtgccggtggaggggcggaggaacgtgctggtgacgagcgcgctgccgtacgtgaacaa 83 Query: 147 cgtgccgcacctgggcaacatcatcggctgcgtgctcagcgccgacgtcttcgcgcgcta 206 ||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 84 cgtgccgcacctggggaacatcatcggctgcgtgctctccgccgacgccttcgcgcgcta 143 Query: 207 ctgccgcctgcgcggncacaacgtgctctacgtctgcggcaccgacgagtacggcaccgc 266 ||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 144 ctgccgcctccgggggcacaacgtgctctacgtctgcggcaccgacgagtacggcaccgc 203 Query: 267 caccgagaacagggccctcgaggagggatgctccccgctccagatctgcgacaagtacca 326 |||||||| || |||| | ||||| || |||||||| ||||||||||||||||||| Sbjct: 204 caccgagaccaaggccatggaggaaggctgctcccccagggagatctgcgacaagtacca 263 Query: 327 tgcgatncacaaggaagtgtacgagtggttcaacatcaacttcgac 372 ||| || |||||||||||||||||||||||| |||||| ||||||| Sbjct: 264 tgccatccacaaggaagtgtacgagtggttcgacatcagcttcgac 309
>dbj|AK067274.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098H24, full insert sequence Length = 2243 Score = 375 bits (189), Expect = e-101 Identities = 261/286 (91%) Strand = Plus / Plus Query: 87 ggtgccggtggcggngcggcggaacgtgctggtgacgagcgcgctgccgtacgtgaacaa 146 ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 229 ggtgccggtggaggggcggaggaacgtgctggtgacgagcgcgctgccgtacgtgaacaa 288 Query: 147 cgtgccgcacctgggcaacatcatcggctgcgtgctcagcgccgacgtcttcgcgcgcta 206 ||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 289 cgtgccgcacctggggaacatcatcggctgcgtgctctccgccgacgccttcgcgcgcta 348 Query: 207 ctgccgcctgcgcggncacaacgtgctctacgtctgcggcaccgacgagtacggcaccgc 266 ||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 349 ctgccgcctccgggggcacaacgtgctctacgtctgcggcaccgacgagtacggcaccgc 408 Query: 267 caccgagaacagggccctcgaggagggatgctccccgctccagatctgcgacaagtacca 326 |||||||| || |||| | ||||| || |||||||| ||||||||||||||||||| Sbjct: 409 caccgagaccaaggccatggaggaaggctgctcccccagggagatctgcgacaagtacca 468 Query: 327 tgcgatncacaaggaagtgtacgagtggttcaacatcaacttcgac 372 ||| || |||||||||||||||||||||||| |||||| ||||||| Sbjct: 469 tgccatccacaaggaagtgtacgagtggttcgacatcagcttcgac 514
>gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0050N08, complete sequence Length = 144593 Score = 305 bits (154), Expect = 5e-80 Identities = 215/236 (91%) Strand = Plus / Plus Query: 87 ggtgccggtggcggngcggcggaacgtgctggtgacgagcgcgctgccgtacgtgaacaa 146 ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 76641 ggtgccggtggaggggcggaggaacgtgctggtgacgagcgcgctgccgtacgtgaacaa 76700 Query: 147 cgtgccgcacctgggcaacatcatcggctgcgtgctcagcgccgacgtcttcgcgcgcta 206 ||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 76701 cgtgccgcacctggggaacatcatcggctgcgtgctctccgccgacgccttcgcgcgcta 76760 Query: 207 ctgccgcctgcgcggncacaacgtgctctacgtctgcggcaccgacgagtacggcaccgc 266 ||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 76761 ctgccgcctccgggggcacaacgtgctctacgtctgcggcaccgacgagtacggcaccgc 76820 Query: 267 caccgagaacagggccctcgaggagggatgctccccgctccagatctgcgacaagt 322 |||||||| || |||| | ||||| || |||||||| ||||||||||||||| Sbjct: 76821 caccgagaccaaggccatggaggaaggctgctcccccagggagatctgcgacaagt 76876 Score = 73.8 bits (37), Expect = 4e-10 Identities = 48/52 (92%) Strand = Plus / Plus Query: 321 gtaccatgcgatncacaaggaagtgtacgagtggttcaacatcaacttcgac 372 ||||||||| || |||||||||||||||||||||||| |||||| ||||||| Sbjct: 77290 gtaccatgccatccacaaggaagtgtacgagtggttcgacatcagcttcgac 77341
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 305 bits (154), Expect = 5e-80 Identities = 215/236 (91%) Strand = Plus / Plus Query: 87 ggtgccggtggcggngcggcggaacgtgctggtgacgagcgcgctgccgtacgtgaacaa 146 ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 12977725 ggtgccggtggaggggcggaggaacgtgctggtgacgagcgcgctgccgtacgtgaacaa 12977784 Query: 147 cgtgccgcacctgggcaacatcatcggctgcgtgctcagcgccgacgtcttcgcgcgcta 206 ||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 12977785 cgtgccgcacctggggaacatcatcggctgcgtgctctccgccgacgccttcgcgcgcta 12977844 Query: 207 ctgccgcctgcgcggncacaacgtgctctacgtctgcggcaccgacgagtacggcaccgc 266 ||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12977845 ctgccgcctccgggggcacaacgtgctctacgtctgcggcaccgacgagtacggcaccgc 12977904 Query: 267 caccgagaacagggccctcgaggagggatgctccccgctccagatctgcgacaagt 322 |||||||| || |||| | ||||| || |||||||| ||||||||||||||| Sbjct: 12977905 caccgagaccaaggccatggaggaaggctgctcccccagggagatctgcgacaagt 12977960 Score = 73.8 bits (37), Expect = 4e-10 Identities = 48/52 (92%) Strand = Plus / Plus Query: 321 gtaccatgcgatncacaaggaagtgtacgagtggttcaacatcaacttcgac 372 ||||||||| || |||||||||||||||||||||||| |||||| ||||||| Sbjct: 12978374 gtaccatgccatccacaaggaagtgtacgagtggttcgacatcagcttcgac 12978425
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 305 bits (154), Expect = 5e-80 Identities = 215/236 (91%) Strand = Plus / Plus Query: 87 ggtgccggtggcggngcggcggaacgtgctggtgacgagcgcgctgccgtacgtgaacaa 146 ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 12985065 ggtgccggtggaggggcggaggaacgtgctggtgacgagcgcgctgccgtacgtgaacaa 12985124 Query: 147 cgtgccgcacctgggcaacatcatcggctgcgtgctcagcgccgacgtcttcgcgcgcta 206 ||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 12985125 cgtgccgcacctggggaacatcatcggctgcgtgctctccgccgacgccttcgcgcgcta 12985184 Query: 207 ctgccgcctgcgcggncacaacgtgctctacgtctgcggcaccgacgagtacggcaccgc 266 ||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12985185 ctgccgcctccgggggcacaacgtgctctacgtctgcggcaccgacgagtacggcaccgc 12985244 Query: 267 caccgagaacagggccctcgaggagggatgctccccgctccagatctgcgacaagt 322 |||||||| || |||| | ||||| || |||||||| ||||||||||||||| Sbjct: 12985245 caccgagaccaaggccatggaggaaggctgctcccccagggagatctgcgacaagt 12985300 Score = 73.8 bits (37), Expect = 4e-10 Identities = 48/52 (92%) Strand = Plus / Plus Query: 321 gtaccatgcgatncacaaggaagtgtacgagtggttcaacatcaacttcgac 372 ||||||||| || |||||||||||||||||||||||| |||||| ||||||| Sbjct: 12985714 gtaccatgccatccacaaggaagtgtacgagtggttcgacatcagcttcgac 12985765
>gb|AF040700.1|AF040700 Oryza sativa methionyl-tRNA synthetase mRNA, complete cds Length = 2850 Score = 168 bits (85), Expect = 8e-39 Identities = 147/168 (87%) Strand = Plus / Plus Query: 124 agcgcgctgccgtacgtgaacaacgtgccgcacctgggcaacatcatcggctgcgtgctc 183 ||||||||||| ||||| |||||||| || ||||| || ||||||||||||||||||||| Sbjct: 116 agcgcgctgccctacgtcaacaacgtccctcacctcgggaacatcatcggctgcgtgctc 175 Query: 184 agcgccgacgtcttcgcgcgctactgccgcctgcgcggncacaacgtgctctacgtctgc 243 ||||||||||| ||||||||||||||||| ||||| || ||||||| ||||| | ||| Sbjct: 176 agcgccgacgtattcgcgcgctactgccggctgcggggctacaacgtcatctacatatgc 235 Query: 244 ggcaccgacgagtacggcaccgccaccgagaacagggccctcgaggag 291 ||||||||||||||||| || |||||||||| || |||| | |||||| Sbjct: 236 ggcaccgacgagtacgggacggccaccgagaccaaggccatggaggag 283
>emb|CR352777.1| Gallus gallus finished cDNA, clone ChEST432g11 Length = 878 Score = 113 bits (57), Expect = 4e-22 Identities = 140/168 (83%) Strand = Plus / Plus Query: 107 ggaacgtgctggtgacgagcgcgctgccgtacgtgaacaacgtgccgcacctgggcaaca 166 ||||||||||| | || ||||| |||| ||||| ||||||||||| ||||||||||||| Sbjct: 425 ggaacgtgctgatcaccagcgccttgccctacgtcaacaacgtgccccacctgggcaaca 484 Query: 167 tcatcggctgcgtgctcagcgccgacgtcttcgcgcgctactgccgcctgcgcggncaca 226 |||| ||||| || |||||||| |||| |||||| | |||||||||||||| | Sbjct: 485 tcattggctgtgtcctcagcgctgacgccttcgccaggtactgccgcctgcggaactgga 544 Query: 227 acgtgctctacgtctgcggcaccgacgagtacggcaccgccaccgaga 274 || ||| ||||| ||||||||||||||||||||||| |||||||||| Sbjct: 545 acacgctgtacgtgtgcggcaccgacgagtacggcacagccaccgaga 592
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 113 bits (57), Expect = 4e-22 Identities = 101/116 (87%) Strand = Plus / Minus Query: 176 gcgtgctcagcgccgacgtcttcgcgcgctactgccgcctgcgcggncacaacgtgctct 235 ||||||||||||||||||| ||||||||||||||||| ||||| || ||||||| ||| Sbjct: 17936117 gcgtgctcagcgccgacgtgttcgcgcgctactgccggctgcggggctacaacgtcatct 17936058 Query: 236 acgtctgcggcaccgacgagtacggcaccgccaccgagaacagggccctcgaggag 291 || | |||||||||||||||||||| || |||||||||| || |||| | |||||| Sbjct: 17936057 acatatgcggcaccgacgagtacgggacggccaccgagaccaaggccatggaggag 17936002 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 124 agcgcgctgccgtacgtgaacaacgtgccgcacctgggcaacatcatcggctg 176 ||||||||||| ||||| |||||||| || ||||| || |||||||||||||| Sbjct: 17936292 agcgcgctgccctacgtcaacaacgtccctcacctcgggaacatcatcggctg 17936240 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 gcgtgctcagcgccgacgtcttcg 199 ||||||||||||||| |||||||| Sbjct: 511428 gcgtgctcagcgccgccgtcttcg 511451
>dbj|AP005929.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0071G09 Length = 169148 Score = 113 bits (57), Expect = 4e-22 Identities = 101/116 (87%) Strand = Plus / Minus Query: 176 gcgtgctcagcgccgacgtcttcgcgcgctactgccgcctgcgcggncacaacgtgctct 235 ||||||||||||||||||| ||||||||||||||||| ||||| || ||||||| ||| Sbjct: 2423 gcgtgctcagcgccgacgtgttcgcgcgctactgccggctgcggggctacaacgtcatct 2364 Query: 236 acgtctgcggcaccgacgagtacggcaccgccaccgagaacagggccctcgaggag 291 || | |||||||||||||||||||| || |||||||||| || |||| | |||||| Sbjct: 2363 acatatgcggcaccgacgagtacgggacggccaccgagaccaaggccatggaggag 2308 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 124 agcgcgctgccgtacgtgaacaacgtgccgcacctgggcaacatcatcggctg 176 ||||||||||| ||||| |||||||| || ||||| || |||||||||||||| Sbjct: 2598 agcgcgctgccctacgtcaacaacgtccctcacctcgggaacatcatcggctg 2546
>dbj|AP003618.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0561B08 Length = 161083 Score = 113 bits (57), Expect = 4e-22 Identities = 101/116 (87%) Strand = Plus / Minus Query: 176 gcgtgctcagcgccgacgtcttcgcgcgctactgccgcctgcgcggncacaacgtgctct 235 ||||||||||||||||||| ||||||||||||||||| ||||| || ||||||| ||| Sbjct: 141306 gcgtgctcagcgccgacgtgttcgcgcgctactgccggctgcggggctacaacgtcatct 141247 Query: 236 acgtctgcggcaccgacgagtacggcaccgccaccgagaacagggccctcgaggag 291 || | |||||||||||||||||||| || |||||||||| || |||| | |||||| Sbjct: 141246 acatatgcggcaccgacgagtacgggacggccaccgagaccaaggccatggaggag 141191 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 124 agcgcgctgccgtacgtgaacaacgtgccgcacctgggcaacatcatcggctg 176 ||||||||||| ||||| |||||||| || ||||| || |||||||||||||| Sbjct: 141481 agcgcgctgccctacgtcaacaacgtccctcacctcgggaacatcatcggctg 141429
>ref|XM_317601.2| Anopheles gambiae str. PEST ENSANGP00000010004 (ENSANGG00000007515), partial mRNA Length = 3033 Score = 85.7 bits (43), Expect = 9e-14 Identities = 111/134 (82%) Strand = Plus / Plus Query: 130 ctgccgtacgtgaacaacgtgccgcacctgggcaacatcatcggctgcgtgctcagcgcc 189 ||||||||||||||||| |||||||| |||||||||||| |||||||||| || || Sbjct: 937 ctgccgtacgtgaacaatgtgccgcatctgggcaacatcgtcggctgcgtactgtcggcg 996 Query: 190 gacgtcttcgcgcgctactgccgcctgcgcggncacaacgtgctctacgtctgcggcacc 249 ||| | || || ||||||| |||||| |||| ||||| ||||||| || ||||||| Sbjct: 997 gacatttttgcccgctactcgcgcctgtgcgggtacaacacgctctacatcggcggcacg 1056 Query: 250 gacgagtacggcac 263 |||||||||||||| Sbjct: 1057 gacgagtacggcac 1070
>ref|XM_368198.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG01046.4) partial mRNA Length = 2103 Score = 67.9 bits (34), Expect = 2e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 232 ctctacgtctgcggcaccgacgagtacggcaccgccaccgagaacagggccctcgaggag 291 ||||||||||| ||| ||||||||||||| ||||||||||||| | |||||| |||||| Sbjct: 169 ctctacgtctgtggctccgacgagtacggtaccgccaccgagacaaaggccctggaggag 228 Query: 292 gg 293 || Sbjct: 229 gg 230 Score = 46.1 bits (23), Expect = 0.081 Identities = 35/39 (89%) Strand = Plus / Plus Query: 136 tacgtgaacaacgtgccgcacctgggcaacatcatcggc 174 ||||| |||||||| ||||| || ||||||||||||||| Sbjct: 73 tacgtcaacaacgtcccgcatctaggcaacatcatcggc 111
>gb|BC111362.1| Bos taurus cDNA clone MGC:134096 IMAGE:8048743, complete cds Length = 2897 Score = 67.9 bits (34), Expect = 2e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 136 tacgtgaacaacgtgccgcacctgggcaacatcatcggctgcgtgctcagcgccgacgtc 195 ||||| |||||||| || ||||| || |||||||||||||| |||||||| ||||||||| Sbjct: 874 tacgtcaacaacgtcccccaccttggaaacatcatcggctgtgtgctcagtgccgacgtc 933 Query: 196 tt 197 || Sbjct: 934 tt 935
>ref|NM_001038091.1| Bos taurus similar to methionine-tRNA synthetase (MGC134096), mRNA Length = 2897 Score = 67.9 bits (34), Expect = 2e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 136 tacgtgaacaacgtgccgcacctgggcaacatcatcggctgcgtgctcagcgccgacgtc 195 ||||| |||||||| || ||||| || |||||||||||||| |||||||| ||||||||| Sbjct: 874 tacgtcaacaacgtcccccaccttggaaacatcatcggctgtgtgctcagtgccgacgtc 933 Query: 196 tt 197 || Sbjct: 934 tt 935
>gb|AY423024.1| Danio rerio methionine-tRNA synthetase (MARS) mRNA, complete cds Length = 3191 Score = 65.9 bits (33), Expect = 9e-08 Identities = 66/77 (85%) Strand = Plus / Plus Query: 124 agcgcgctgccgtacgtgaacaacgtgccgcacctgggcaacatcatcggctgcgtgctc 183 ||||| || ||||| || ||||| |||||||| ||||| ||||||||||||||||| ||| Sbjct: 983 agcgctctcccgtatgtcaacaatgtgccgcatctgggaaacatcatcggctgcgtcctc 1042 Query: 184 agcgccgacgtcttcgc 200 || || ||||| ||||| Sbjct: 1043 agtgctgacgtgttcgc 1059
>gb|AY648846.1| Danio rerio methionine-tRNA synthetase mRNA, complete cds Length = 3151 Score = 65.9 bits (33), Expect = 9e-08 Identities = 66/77 (85%) Strand = Plus / Plus Query: 124 agcgcgctgccgtacgtgaacaacgtgccgcacctgggcaacatcatcggctgcgtgctc 183 ||||| || ||||| || ||||| |||||||| ||||| ||||||||||||||||| ||| Sbjct: 983 agcgctctcccgtatgtcaacaatgtgccgcatctgggaaacatcatcggctgcgtcctc 1042 Query: 184 agcgccgacgtcttcgc 200 || || ||||| ||||| Sbjct: 1043 agtgctgacgtgttcgc 1059
>gb|BC057463.1| Danio rerio methionine-tRNA synthetase, mRNA (cDNA clone MGC:66122 IMAGE:2639182), complete cds Length = 3143 Score = 65.9 bits (33), Expect = 9e-08 Identities = 66/77 (85%) Strand = Plus / Plus Query: 124 agcgcgctgccgtacgtgaacaacgtgccgcacctgggcaacatcatcggctgcgtgctc 183 ||||| || ||||| || ||||| |||||||| ||||| ||||||||||||||||| ||| Sbjct: 964 agcgctctcccgtatgtcaacaatgtgccgcatctgggaaacatcatcggctgcgtcctc 1023 Query: 184 agcgccgacgtcttcgc 200 || || ||||| ||||| Sbjct: 1024 agtgctgacgtgttcgc 1040
>gb|BC046899.1| Danio rerio methionine-tRNA synthetase, mRNA (cDNA clone IMAGE:3818335), partial cds Length = 3151 Score = 65.9 bits (33), Expect = 9e-08 Identities = 66/77 (85%) Strand = Plus / Plus Query: 124 agcgcgctgccgtacgtgaacaacgtgccgcacctgggcaacatcatcggctgcgtgctc 183 ||||| || ||||| || ||||| |||||||| ||||| ||||||||||||||||| ||| Sbjct: 983 agcgctctcccgtatgtcaacaatgtgccgcatctgggaaacatcatcggctgcgtcctc 1042 Query: 184 agcgccgacgtcttcgc 200 || || ||||| ||||| Sbjct: 1043 agtgctgacgtgttcgc 1059
>emb|BX950854.12| Zebrafish DNA sequence from clone CH211-125M22, complete sequence Length = 171896 Score = 65.9 bits (33), Expect = 9e-08 Identities = 66/77 (85%) Strand = Plus / Minus Query: 124 agcgcgctgccgtacgtgaacaacgtgccgcacctgggcaacatcatcggctgcgtgctc 183 ||||| || ||||| || ||||| |||||||| ||||| ||||||||||||||||| ||| Sbjct: 131662 agcgctctcccgtatgtcaacaatgtgccgcatctgggaaacatcatcggctgcgtcctc 131603 Query: 184 agcgccgacgtcttcgc 200 || || ||||| ||||| Sbjct: 131602 agtgctgacgtgttcgc 131586
>ref|NM_200076.1| Danio rerio methionine-tRNA synthetase (mars), mRNA Length = 3191 Score = 65.9 bits (33), Expect = 9e-08 Identities = 66/77 (85%) Strand = Plus / Plus Query: 124 agcgcgctgccgtacgtgaacaacgtgccgcacctgggcaacatcatcggctgcgtgctc 183 ||||| || ||||| || ||||| |||||||| ||||| ||||||||||||||||| ||| Sbjct: 983 agcgctctcccgtatgtcaacaatgtgccgcatctgggaaacatcatcggctgcgtcctc 1042 Query: 184 agcgccgacgtcttcgc 200 || || ||||| ||||| Sbjct: 1043 agtgctgacgtgttcgc 1059
>ref|XM_424183.1| PREDICTED: Gallus gallus similar to ADP-ribosylarginine hydrolase (ADP-ribose-L-arginine cleaving enzyme) (LOC426545), partial mRNA Length = 1923 Score = 63.9 bits (32), Expect = 3e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 235 tacgtctgcggcaccgacgagtacggcaccgccaccgaga 274 ||||| ||||||||||||||||||||||| |||||||||| Sbjct: 592 tacgtgtgcggcaccgacgagtacggcacagccaccgaga 553
>gb|AY109485.1| Zea mays CL580_1 mRNA sequence Length = 2647 Score = 63.9 bits (32), Expect = 3e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 134 cgtacgtgaacaacgtgccgcacctgggcaacatcatcggctgcgtgctcagcgccgacg 193 ||||||| || || || |||||||| || |||||||||||||| ||||||||||| |||| Sbjct: 47 cgtacgtcaataatgtcccgcacctagggaacatcatcggctgggtgctcagcgcagacg 106 Query: 194 tcttcgcgcgctactg 209 | | |||||| ||||| Sbjct: 107 tgtacgcgcggtactg 122 Score = 56.0 bits (28), Expect = 8e-05 Identities = 48/55 (87%) Strand = Plus / Plus Query: 308 agatctgcgacaagtaccatgcgatncacaaggaagtgtacgagtggttcaacat 362 |||||||||| ||||||||||| || ||||| ||||| ||| ||||||| ||||| Sbjct: 221 agatctgcgataagtaccatgctatccacaatgaagtttacaagtggtttaacat 275
>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome Length = 2843201 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Plus Query: 241 tgcggcaccgacgagtacggcaccgccaccgaga 274 |||||||||||||| ||||| ||||||||||||| Sbjct: 1090782 tgcggcaccgacgaatacggaaccgccaccgaga 1090815
>ref|XM_570588.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CND04250) partial mRNA Length = 2252 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Plus Query: 139 gtgaacaacgtgccgcacctgggcaacatcatcggct 175 ||||||||||| || ||||| |||||||||||||||| Sbjct: 160 gtgaacaacgtaccacaccttggcaacatcatcggct 196
>ref|XM_653892.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1380.2), mRNA Length = 1977 Score = 48.1 bits (24), Expect = 0.021 Identities = 33/36 (91%) Strand = Plus / Plus Query: 239 tctgcggcaccgacgagtacggcaccgccaccgaga 274 ||||||| ||||||||||| ||||||||||| |||| Sbjct: 173 tctgcggaaccgacgagtatggcaccgccacggaga 208
>ref|XM_388790.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08614.1) partial mRNA Length = 2022 Score = 48.1 bits (24), Expect = 0.021 Identities = 36/40 (90%) Strand = Plus / Plus Query: 233 tctacgtctgcggcaccgacgagtacggcaccgccaccga 272 ||||| |||| ||| ||||||||||||| ||||||||||| Sbjct: 167 tctacatctgtggctccgacgagtacggtaccgccaccga 206
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 46.1 bits (23), Expect = 0.081 Identities = 32/35 (91%) Strand = Plus / Plus Query: 139 gtgaacaacgtgccgcacctgggcaacatcatcgg 173 ||||||||||| || ||||| |||||||||||||| Sbjct: 1180973 gtgaacaacgtaccacaccttggcaacatcatcgg 1181007
>gb|AC144806.10| Medicago truncatula clone mth2-34h22, complete sequence Length = 124550 Score = 46.1 bits (23), Expect = 0.081 Identities = 34/38 (89%) Strand = Plus / Minus Query: 322 taccatgcgatncacaaggaagtgtacgagtggttcaa 359 |||||||| || ||||||||||| ||||| |||||||| Sbjct: 84999 taccatgctattcacaaggaagtctacgattggttcaa 84962
>emb|Z47997.1|PPRRNAS P.paucicellulare 5.8S, 18S and 26S rRNA genes Length = 3669 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Plus Query: 150 gccgcacctgggcaacatcatcg 172 ||||||||||||||||||||||| Sbjct: 1248 gccgcacctgggcaacatcatcg 1270
>emb|Z28970.1|GPRRNAS G.planctonica 5.8S, 18S and 26S rRNA genes Length = 2812 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Plus Query: 150 gccgcacctgggcaacatcatcg 172 ||||||||||||||||||||||| Sbjct: 1264 gccgcacctgggcaacatcatcg 1286
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 58 agcgcggcgatgtcgtcggggcaggc 83 ||||||||||||||||||| |||||| Sbjct: 3165218 agcgcggcgatgtcgtcggcgcaggc 3165243
>ref|XM_959545.1| Neurospora crassa OR74A hypothetical protein (NCU07451.1) partial mRNA Length = 1992 Score = 42.1 bits (21), Expect = 1.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 130 ctgccgtacgtgaacaacgtgccgcacctgggcaacatcat 170 ||||| ||||| |||||||| || || |||||||||||||| Sbjct: 67 ctgccctacgtcaacaacgtcccccatctgggcaacatcat 107
>ref|XM_327736.1| Neurospora crassa OR74A hypothetical protein (NCU07451.1) partial mRNA Length = 1992 Score = 42.1 bits (21), Expect = 1.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 130 ctgccgtacgtgaacaacgtgccgcacctgggcaacatcat 170 ||||| ||||| |||||||| || || |||||||||||||| Sbjct: 67 ctgccctacgtcaacaacgtcccccatctgggcaacatcat 107
>ref|XM_754585.1| Ustilago maydis 521 hypothetical protein (UM03531.1) partial mRNA Length = 2505 Score = 42.1 bits (21), Expect = 1.3 Identities = 42/49 (85%) Strand = Plus / Plus Query: 127 gcgctgccgtacgtgaacaacgtgccgcacctgggcaacatcatcggct 175 |||||||| ||||| ||||| || || || || |||||||||||||||| Sbjct: 466 gcgctgccttacgtcaacaatgtcccacatctcggcaacatcatcggct 514
>gb|AY119445.1| Drosophila melanogaster AT05114 full insert cDNA Length = 3483 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 241 tgcggcaccgacgagtacggcaccgccaccgagaaca 277 |||||||| || |||||||| || ||||||||||||| Sbjct: 1093 tgcggcacggatgagtacggtacggccaccgagaaca 1129
>ref|NM_137538.1| Drosophila melanogaster CG15100-RA (CG15100), mRNA Length = 3483 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 241 tgcggcaccgacgagtacggcaccgccaccgagaaca 277 |||||||| || |||||||| || ||||||||||||| Sbjct: 1084 tgcggcacggatgagtacggtacggccaccgagaaca 1120
>gb|AC099016.1| Drosophila melanogaster, chromosome 2R, region 56A-56A, BAC clone BACR27C21, complete sequence Length = 173373 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 241 tgcggcaccgacgagtacggcaccgccaccgagaaca 277 |||||||| || |||||||| || ||||||||||||| Sbjct: 79137 tgcggcacggatgagtacggtacggccaccgagaaca 79101
>gb|AE003798.3| Drosophila melanogaster chromosome 2R, section 52 of 73 of the complete sequence Length = 242365 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 241 tgcggcaccgacgagtacggcaccgccaccgagaaca 277 |||||||| || |||||||| || ||||||||||||| Sbjct: 220101 tgcggcacggatgagtacggtacggccaccgagaaca 220065
>gb|AC004298.1|AC004298 Drosophila melanogaster DNA sequence (P1 DS02599 (D184)), complete sequence Length = 81522 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 241 tgcggcaccgacgagtacggcaccgccaccgagaaca 277 |||||||| || |||||||| || ||||||||||||| Sbjct: 49383 tgcggcacggatgagtacggtacggccaccgagaaca 49419
>emb|AL122035.6|CNS01DSY Human chromosome 14 DNA sequence BAC C-2555O16 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 152556 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 ccctcgaggagggatgctccc 301 ||||||||||||||||||||| Sbjct: 99169 ccctcgaggagggatgctccc 99189
>ref|NM_185356.1| Oryza sativa (japonica cultivar-group), mRNA Length = 855 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 gcgtgctcagcgccgacgtcttcg 199 ||||||||||||||| |||||||| Sbjct: 283 gcgtgctcagcgccgccgtcttcg 260
>ref|XM_480395.1| Oryza sativa (japonica cultivar-group), mRNA Length = 966 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 gcgccgacgtcttcgcgcgc 204 |||||||||||||||||||| Sbjct: 206 gcgccgacgtcttcgcgcgc 225
>gb|AC136519.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0007C23, complete sequence Length = 173764 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 gcgcggcgatgtcgtcggggcagg 82 |||||||| ||||||||||||||| Sbjct: 7793 gcgcggcggtgtcgtcggggcagg 7770
>gb|AC132493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636E04, complete sequence Length = 141171 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 gcgcggcgatgtcgtcggggcagg 82 |||||||| ||||||||||||||| Sbjct: 97585 gcgcggcggtgtcgtcggggcagg 97562
>gb|DQ088033.1| Desulfovibrio gigas cytochrome bd operon, complete sequence; and Ca2+/Na+ antiporter gene, complete cds Length = 5052 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cctgggcaacatcatcggct 175 |||||||||||||||||||| Sbjct: 3704 cctgggcaacatcatcggct 3723
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ccgacgagtacggcaccgcc 267 |||||||||||||||||||| Sbjct: 270170 ccgacgagtacggcaccgcc 270151
>dbj|AB225357.1| Aspergillus oryzae cDNA, contig sequence: AoEST2209 Length = 970 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 232 ctctacgtctgcggcaccgacgagtacggcac 263 ||||| |||||||| ||||| ||||||||||| Sbjct: 265 ctctatgtctgcggtaccgatgagtacggcac 296
>dbj|AB223292.1| Aspergillus oryzae cDNA, contig sequence: AoEST0123 Length = 627 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 232 ctctacgtctgcggcaccgacgagtacggcac 263 ||||| |||||||| ||||| ||||||||||| Sbjct: 261 ctctatgtctgcggtaccgatgagtacggcac 292
>gb|DQ061058.1| Oryza sativa (japonica cultivar-group) alpha-expansin 17 (EXPA17) mRNA, partial cds Length = 808 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 gcgtgctcagcgccgacgtcttcg 199 ||||||||||||||| |||||||| Sbjct: 270 gcgtgctcagcgccgccgtcttcg 247
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 gcgccgacgtcttcgcgcgc 204 |||||||||||||||||||| Sbjct: 4852555 gcgccgacgtcttcgcgcgc 4852536
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 gcgcggcgatgtcgtcggggcagg 82 |||||||| ||||||||||||||| Sbjct: 5960011 gcgcggcggtgtcgtcggggcagg 5959988
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 243 cggcaccgacgagtacggcaccgccaccgaga 274 |||||||||| ||| || |||||||||||||| Sbjct: 8413066 cggcaccgacaagttcgccaccgccaccgaga 8413097
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 acgagcgcgctgccgtacgtgaac 144 ||||||||||||||||||| |||| Sbjct: 1523224 acgagcgcgctgccgtacgcgaac 1523247
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 40.1 bits (20), Expect = 5.0 Identities = 59/72 (81%) Strand = Plus / Plus Query: 136 tacgtgaacaacgtgccgcacctgggcaacatcatcggctgcgtgctcagcgccgacgtc 195 ||||| ||| |||| || |||||||||| |||| ||| ||||||||||||| ||| || Sbjct: 706507 tacgtaaaccacgtcccccacctgggcacgctcataggcagcgtgctcagcgcggacatc 706566 Query: 196 ttcgcgcgctac 207 | ||| |||||| Sbjct: 706567 tacgcccgctac 706578
>dbj|AP000616.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0514G12 Length = 138929 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 gcgtgctcagcgccgacgtcttcg 199 ||||||||||||||| |||||||| Sbjct: 56936 gcgtgctcagcgccgccgtcttcg 56959
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 243 cggcaccgacgagtacggcaccgc 266 ||||||||||||| |||||||||| Sbjct: 4050264 cggcaccgacgagcacggcaccgc 4050241 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 agcgcggcgatgtcgtcggg 77 |||||||||||||||||||| Sbjct: 1707319 agcgcggcgatgtcgtcggg 1707338
>dbj|AP004646.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1122_A12 Length = 149011 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 gcgccgacgtcttcgcgcgc 204 |||||||||||||||||||| Sbjct: 11809 gcgccgacgtcttcgcgcgc 11790
>dbj|AP005440.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0056D04 Length = 158118 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 gcgccgacgtcttcgcgcgc 204 |||||||||||||||||||| Sbjct: 57349 gcgccgacgtcttcgcgcgc 57330
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gctcagcgccgacgtcttcg 199 |||||||||||||||||||| Sbjct: 1137284 gctcagcgccgacgtcttcg 1137303
>dbj|AB073151.1| Comamonas sp. NCIMB 9872 cyclopentanol metabolism gene cluster Length = 16058 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 ggtgacgagcgcgctgccgt 136 |||||||||||||||||||| Sbjct: 1704 ggtgacgagcgcgctgccgt 1685 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,989,401 Number of Sequences: 3902068 Number of extensions: 1989401 Number of successful extensions: 34544 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33773 Number of HSP's gapped (non-prelim): 769 length of query: 377 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 355 effective length of database: 17,147,199,772 effective search space: 6087255919060 effective search space used: 6087255919060 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
