ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal19k20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1XYLX_PSEPU (P23099) Toluate 1,2-dioxygenase alpha subunit (EC 1.... 30 3.6
2TISD_MOUSE (P23949) Butyrate response factor 2 (TIS11D protein) 29 8.1
3GAT6A_XENLA (Q91678) GATA-binding factor 6-A (Transcription fact... 29 8.1

>XYLX_PSEPU (P23099) Toluate 1,2-dioxygenase alpha subunit (EC 1.14.12.-)|
          Length = 454

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +1

Query: 4   TRQKNG----WLYTCSFYSHRLCSLALFDEATSPCSFHGMT 114
           TR K+G    ++  CS     LC     ++AT  CSFHG T
Sbjct: 78  TRNKDGELNAFVNACSHRGATLCRFRSGNKATHTCSFHGWT 118



to top

>TISD_MOUSE (P23949) Butyrate response factor 2 (TIS11D protein)|
          Length = 367

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +3

Query: 99  LPRHDGSALHRVKHPHAAPSLIPPKSGSAPKSNFS 203
           L RH  S LH + HP  +P    PK   AP    S
Sbjct: 24  LRRHSASNLHALAHPVPSPGSCSPKFPGAPNGGGS 58



to top

>GAT6A_XENLA (Q91678) GATA-binding factor 6-A (Transcription factor xGATA-6A)|
          Length = 391

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 205 AHTDNGHWLLHNNDKHDGLNEXXXXXXXXASPPSPDLHDG 324
           AH+ N HW    ++     N           PPSP +H+G
Sbjct: 58  AHSVNSHWSQATSESSSFNNSSPHTSSRYHYPPSPPMHNG 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,706,013
Number of Sequences: 219361
Number of extensions: 1644039
Number of successful extensions: 4914
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4909
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top