>CTR1_RAT (P30823) High-affinity cationic amino acid transporter 1 (CAT-1)|
           (CAT1) (System Y+ basic amino acid transporter)
           (Ecotropic retroviral leukemia receptor) (ERR)
           (Ecotropic retrovirus receptor)
          Length = 624

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = +1

Query: 394 FICPFVPLLPVMCILINTYLLINLGGGTWMRVGVW 498
           F  PFVP+LPV+ I +N YL++ L  GTW+R  VW
Sbjct: 553 FKVPFVPVLPVLSIFVNIYLMMQLDQGTWVRFAVW 587

>CTR1_MOUSE (Q09143) High-affinity cationic amino acid transporter 1 (CAT-1)|
           (CAT1) (System Y+ basic amino acid transporter)
           (Ecotropic retroviral leukemia receptor) (ERR)
           (Ecotropic retrovirus receptor)
          Length = 622

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = +1

Query: 394 FICPFVPLLPVMCILINTYLLINLGGGTWMRVGVW 498
           F  PFVP+LPV+ I +N YL++ L  GTW+R  VW
Sbjct: 551 FKVPFVPVLPVLSIFVNIYLMMQLDQGTWVRFAVW 585

>CTR1_HUMAN (P30825) High-affinity cationic amino acid transporter 1 (CAT-1)|
           (CAT1) (System Y+ basic amino acid transporter)
           (Ecotropic retroviral leukemia receptor homolog) (ERR)
           (Ecotropic retrovirus receptor homolog)
          Length = 629

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 17/35 (48%), Positives = 25/35 (71%)
 Frame = +1

Query: 394 FICPFVPLLPVMCILINTYLLINLGGGTWMRVGVW 498
           F  PF+P+LP++ I +N YL++ L  GTW+R  VW
Sbjct: 558 FKVPFLPVLPILSIFVNVYLMMQLDQGTWVRFAVW 592

>CTR2_MOUSE (P18581) Low-affinity cationic amino acid transporter 2 (CAT-2)|
           (CAT2) (TEA protein) (T-cell early activation protein)
           (20.5)
          Length = 657

 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +1

Query: 394 FICPFVPLLPVMCILINTYLLINLGGGTWMRVGVW 498
           F+ PF+P LP   IL+N YL++ L   TW+R  +W
Sbjct: 555 FMVPFLPFLPAFSILVNIYLMVQLSADTWIRFSIW 589

>CTR2_HUMAN (P52569) Low-affinity cationic amino acid transporter 2 (CAT-2)|
           (CAT2)
          Length = 658

 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +1

Query: 394 FICPFVPLLPVMCILINTYLLINLGGGTWMRVGVW 498
           F+ PF+P LP   IL+N YL++ L   TW+R  +W
Sbjct: 556 FMVPFLPFLPTFTILVNIYLMVQLSADTWVRFSIW 590

>CTR3_HUMAN (Q8WY07) Cationic amino acid transporter 3 (CAT-3) (Solute carrier|
           family 7 member 3) (Cationic amino acid transporter y+)
          Length = 619

 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 18/35 (51%), Positives = 24/35 (68%)
 Frame = +1

Query: 394 FICPFVPLLPVMCILINTYLLINLGGGTWMRVGVW 498
           F  P +PLLP+M I +N YL++ +  GTW R GVW
Sbjct: 539 FKVPALPLLPLMSIFVNIYLMMQMTAGTWARFGVW 573

>CTR3_MOUSE (P70423) Cationic amino acid transporter 3 (CAT-3) (Solute carrier|
           family 7 member 3) (Cationic amino acid transporter y+)
          Length = 618

 Score = 45.4 bits (106), Expect = 8e-05
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = +1

Query: 394 FICPFVPLLPVMCILINTYLLINLGGGTWMRVGVW 498
           F  P VPLLP++ I +N YL++ +  GTW R G+W
Sbjct: 538 FKVPAVPLLPLVSIFVNVYLMMQMTAGTWARFGIW 572

>CTR3_RAT (O08812) Cationic amino acid transporter 3 (CAT-3) (Solute carrier|
           family 7 member 3) (Cationic amino acid transporter y+)
          Length = 619

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +1

Query: 394 FICPFVPLLPVMCILINTYLLINLGGGTWMRVGVW 498
           F  P VPLLP++ I +N YL++ +   TW R GVW
Sbjct: 539 FKVPVVPLLPLVSIFVNVYLMMQMTADTWARFGVW 573

>CTR4_HUMAN (O43246) Cationic amino acid transporter 4 (CAT-4) (CAT4)|
          Length = 635

 Score = 37.0 bits (84), Expect = 0.029
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 394 FICPFVPLLPVMCILINTYLLINLGGGTWMRVGVW 498
           F  P VPL+P + I++N  L++ L   TW+R  +W
Sbjct: 540 FQIPMVPLIPALSIVLNICLMLKLSYLTWVRFSIW 574

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 27.3 bits (59), Expect(2) = 0.37
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 358 LGRSRRAHPDQLKGPGHRRRRRSTSP 281
           +GR RR  P +   P  R+R++ TSP
Sbjct: 515 VGRRRRHSPSRSASPSPRKRQKETSP 540



 Score = 24.6 bits (52), Expect(2) = 0.37
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 304 RRRRSTSPGVAGTIQKPKPSGLEPP 230
           RRRRS SP  A   + P P+   PP
Sbjct: 557 RRRRSPSPPPARRRRSPSPAPPPPP 581

>SPEE_ARCFU (O27950) Probable spermidine synthase (EC 2.5.1.16) (Putrescine|
           aminopropyltransferase) (SPDSY)
          Length = 269

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +1

Query: 46  DEEKVGSPLGDGNHEQGTSEIKDVIVVESIDDPLIEKQLYTNKLDELKRRKTAARSIAS 222
           ++E+V   + DG       EI DVI+V+S D   +   L+  +  EL R+K    S+ S
Sbjct: 123 EDERVEIAIMDGKEFLRDCEIFDVIIVDSTDPVGVSDTLFDREFFELARQKCDVISLQS 181

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -1

Query: 430 TSPAAVERMGR*ILQNDQMSAFHRLGRSRRAHPD---QLKGPGHRRRRRSTSPGVAGTIQ 260
           +S +  ER  R  ++N ++    R   SR   P    + K P  RRRRRS SP  A   +
Sbjct: 494 SSSSEEERPKRSNVKNGEVGRRRRHSHSRSPSPSPRKRQKEPSPRRRRRSPSPPPARRRR 553

Query: 259 KPKP 248
            P P
Sbjct: 554 SPSP 557

>AN32E_HUMAN (Q9BTT0) Acidic leucine-rich nuclear phosphoprotein 32 family|
           member E (LANP-like protein) (LANP-L)
          Length = 268

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 46  DEEKVGSPLGDGNHEQGTSEI-KDVIVVESIDDPLIEK 156
           DE++ GS LG+G  E G S + K+ I  E  DD  +E+
Sbjct: 201 DEDEAGSELGEGEEEVGLSYLMKEEIQDEEDDDDYVEE 238

>IWS1_CANGA (Q6FVX3) Transcription factor IWS1|
          Length = 382

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 11/48 (22%), Positives = 29/48 (60%)
 Frame = +1

Query: 76  DGNHEQGTSEIKDVIVVESIDDPLIEKQLYTNKLDELKRRKTAARSIA 219
           D + E+  + +++ + ++S +DP  ++Q+  ++LD L ++ +  R  A
Sbjct: 62  DDDDEEVQAPVEEQVTIDSSEDPKSQRQILEDRLDRLLKKTSGRRQRA 109

>EMAL4_HUMAN (Q9HC35) Echinoderm microtubule-associated protein-like 4 (EMAP-4)|
           (Restrictedly overexpressed proliferation-associated
           protein) (Ropp 120)
          Length = 981

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 453 QVCVYENAHHRQQWNEWADESSRMTK*VPSIVLVDPGEHT 334
           QVC++ +  HR +W    DE        PS  +V  G H+
Sbjct: 615 QVCLWNSMEHRLEWTRLVDEPGHCADFHPSGTVVAIGTHS 654

>RAB3I_HUMAN (Q96QF0) RAB3A-interacting protein (Rabin-3) (SSX2-interacting|
           protein)
          Length = 476

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -1

Query: 391 LQNDQMSAFHRLGRSRRAHPDQLKGPGHRRRRRSTSPGVAGTIQKPKPSGLEPPHIQ 221
           + ND +  FH +  +    PD L       + ++TSP V   I +P PS L    IQ
Sbjct: 17  MANDPLEGFHEVNLASPTSPDLLGVYESGTQEQTTSPSV---IYRPHPSALSSVPIQ 70

>NSMA2_MOUSE (Q9JJY3) Sphingomyelin phosphodiesterase 3 (EC 3.1.4.12) (Neutral|
           sphingomyelinase 2) (Neutral sphingomyelinase II)
           (nSMase2) (nSMase-2)
          Length = 655

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -1

Query: 214 CCEQLFCAALTHPIYLCIAASQ*EGHRLILLQSHPL-SQTSPVHGSHLQEDSP 59
           CC QLFC  L  P+YL +  +      L  +   PL S   P   S L++ +P
Sbjct: 53  CCLQLFCTVLFTPVYLALLVAALPFAFLGFIFWSPLQSARRPYSYSRLEDKNP 105

>RPOB_THEMA (P29398) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1263

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 46   DEEKVGSPLGDG-NHEQGTSEIKDVIVVESIDDPLIEKQLYTNKLDELKRRKTAARS 213
            + +K G  LGD  N+  G   ++D    E  D+P++   +Y  KL  + + K  ARS
Sbjct: 1102 ERKKRGLHLGDDENNPNGKVVLRDGRTGEPFDNPVVVGYMYMLKLIHIAKEKIHARS 1158

>ASGR2_HUMAN (P07307) Asialoglycoprotein receptor 2 (ASGP-R 2) (ASGPR 2)|
           (Hepatic lectin H2)
          Length = 311

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 32/89 (35%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
 Frame = -1

Query: 361 RLGRSRRAHP-DQLKGPGHRRRR-RSTSPGVAGTIQKPKPSGLEPPHIQMLCCEQLFCA- 191
           +L      HP  Q +GPG RR   R  +P + G    P P+    P  Q LC    F   
Sbjct: 10  QLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKG----PPPA---QPLAQRLCSMVCFSLL 62

Query: 190 ALTHPIYL----CIAASQ*EGHRLILLQS 116
           AL+  I L    C+  SQ EGHR   LQ+
Sbjct: 63  ALSFNILLLVVICVTGSQSEGHRGAQLQA 91

>AN32E_MOUSE (P97822) Acidic leucine-rich nuclear phosphoprotein 32 family|
           member E (LANP-like protein) (LANP-L) (Cerebellar
           postnatal development protein 1)
          Length = 260

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 46  DEEKVGSPLGDGNHEQGTSEI-KDVIVVESIDDPLIEK 156
           DE++ GS +G+G  E G S + KD I  E  DD  +++
Sbjct: 193 DEDEAGSEVGEGEEEVGLSYLMKDEIQDEEDDDDYVDE 230

>UTP14_YEAST (Q04500) U3 small nucleolar RNA-associated protein 14 (U3|
           snoRNA-associated protein 14)
          Length = 899

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +1

Query: 46  DEEKVGSPLGDGNHEQGTSEIKDV---IVVESIDDPLIEKQ 159
           +EE  G PL DG + Q   E KDV   +  ES ++  ++KQ
Sbjct: 637 EEESDGEPLQDGQNNQQDEEAKDVNPWLANESDEEHTVKKQ 677

>HIS52_SYNPX (Q7U899) Imidazole glycerol phosphate synthase subunit hisH2 (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH2) (ImGP synthase
           subunit hisH2) (IGPS subunit hisH2)
          Length = 212

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 112 DVIVVESID--DPLIEKQLYTNKLDELKRRKTAARSIASVCVGVLILTASAS 261
           D +V+  +   DP I+    T  + +LKR   A R +  +C+G+ +L  S++
Sbjct: 42  DALVLPGVGSFDPAIDNLQSTGLIPDLKRWNEADRPLLGICLGLQLLFESSA 93

>VPS18_BRARE (P59015) Vacuolar protein sorting 18|
          Length = 974

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
 Frame = +1

Query: 46   DEEKVGSPLGDGNHEQGTSEIKDVI----------VVESIDDPLIEKQLYTNKL 177
            +E+ V    G G+ EQ  S+I D+I          +++SID P I+ Q +  ++
Sbjct: 917  EEDTVSLGKGQGSREQIKSDIDDIIACECVYCGELMIKSIDKPFIDPQKFDQEM 970


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,872,089
Number of Sequences: 219361
Number of extensions: 1816435
Number of successful extensions: 5448
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 5211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5444
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)