No.
Definition
Score (bits)
E Value
1 dbj|AK104878.1| Oryza sativa (japonica cultivar-group) cDNA clon...
565
e-158
2 dbj|AK066022.1| Oryza sativa (japonica cultivar-group) cDNA clon...
565
e-158
3 ref|XM_464736.1| Oryza sativa (japonica cultivar-group), mRNA
462
e-127
4 dbj|AK059462.1| Oryza sativa (japonica cultivar-group) cDNA clon...
236
7e-59
5 gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome ...
133
8e-28
6 gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome...
133
8e-28
7 dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...
133
8e-28
8 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
125
2e-25
9 dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic D...
125
2e-25
10 dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic D...
125
2e-25
11 ref|XM_425915.1| PREDICTED: Gallus gallus similar to TIR domain ...
42
2.1
12 gb|AC112943.12| Mus musculus chromosome 16, clone RP23-424C7, co...
42
2.1
13 emb|Z97206.1|HS359N14 Human DNA sequence from clone RP3-359N14 o...
42
2.1
14 emb|AL606500.8| Human DNA sequence from clone RP11-274N19 on chr...
42
2.1
15 gb|AC155833.10| Mus musculus 10 BAC RP24-405O10 (Roswell Park Ca...
42
2.1
16 emb|AL732493.17| Mouse DNA sequence from clone RP23-358F6 on chr...
42
2.1
17 gb|AF526137.1| Peromyscus maniculatus microsatellite BW4-164 seq...
40
8.5
18 gb|AC165278.4| Mus musculus chromosome 15, clone RP23-250O18, co...
40
8.5
19 gb|AC111110.21| Mus musculus chromosome 1, clone RP23-201B13, co...
40
8.5
20 emb|AL731585.5| Oryza sativa genomic DNA, chromosome 4, BAC clon...
40
8.5
21 emb|AL109920.15|HSDJ335E1 Human DNA sequence from clone RP3-335E...
40
8.5
22 emb|AL731614.4|OSJN00260 Oryza sativa genomic DNA, chromosome 4,...
40
8.5
23 gb|AC106865.4| Homo sapiens BAC clone RP11-153M7 from 4, complet...
40
8.5
24 gb|AC079349.6| Homo sapiens BAC clone RP11-436A7 from 4, complet...
40
8.5
25 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...
40
8.5
26 emb|BX088718.7| Zebrafish DNA sequence from clone DKEY-185E18, c...
40
8.5
27 dbj|AK066988.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
8.5
28 dbj|AK065786.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
8.5
29 emb|AL591913.14| Mouse DNA sequence from clone RP23-120A4 on chr...
40
8.5
>gb|AC108759.2 | Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
OSJNBa0072P02, complete sequence
Length = 157488
Score = 133 bits (67), Expect = 8e-28
Identities = 115/131 (87%)
Strand = Plus / Minus
Query: 30 aatctattaccacttctaccagcttctgaagaacaaggtggaagatgtggcagctgctcg 89
|||||||||| |||| |||||| |||| || ||||||||||||||| | |||| ||||||
Sbjct: 156457 aatctattactacttttaccagattctcaaaaacaaggtggaagatctagcagttgctcg 156398
Query: 90 tgggaaaaagggcctaggggatggcactgttgggatgttttcttggcttgttattgcagc 149
|| || ||||| ||||||||||| |||||||||||||| || ||||||| |||||||||
Sbjct: 156397 cggtaagaagggtctaggggatggtactgttgggatgttctcctggcttggtattgcagc 156338
Query: 150 tgttgctgggt 160
|||||||||||
Sbjct: 156337 tgttgctgggt 156327
Score = 107 bits (54), Expect = 4e-20
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 371 tccgggaagtctatcgtgaatcaggcataagtggattctggaaaggacttattccgacac 430
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 154687 tccgggaggtctaccgtgaatcaggcataagaggattctggaaaggacttattccaacac 154628
Query: 431 taattatggt 440
||||||||||
Sbjct: 154627 taattatggt 154618
Score = 93.7 bits (47), Expect = 7e-16
Identities = 62/67 (92%)
Strand = Plus / Minus
Query: 545 aggtatttttattaggtgcaatagcaaagctgggagctactgttgtgacctacccgttgt 604
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct: 153805 aggtattcttattaggtgcaatagcaaagctcggagctactgttgtgacatacccattgc 153746
Query: 605 tagtggt 611
|||||||
Sbjct: 153745 tagtggt 153739
Score = 89.7 bits (45), Expect = 1e-14
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 438 ggtatgcaatccatcaattcagtttatgatatatgaaacgctgtcaaagcgtctccagtc 497
|||||| |||||||||||||| |||||||| |||||||| || |||||||||||| |||
Sbjct: 154534 ggtatgtaatccatcaattcaatttatgatctatgaaacattggcaaagcgtctccggtc 154475
Query: 498 gaagcggtctggaaagcgattccccaagaagaacatcactgctatggaggtat 550
||| | ||||||||| | |||| || |||||| | ||||||||||||||||
Sbjct: 154474 aaagagatctggaaaggaactcccaaaaaagaaccttactgctatggaggtat 154422
Score = 71.9 bits (36), Expect = 2e-09
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 158 ggtcaatcaatgttcttcttacaattccaatatgggttcttgtcacacgtatgcag 213
|||||||||||||||||||||| | ||||||||||||||| || || |||||||||
Sbjct: 155795 ggtcaatcaatgttcttcttaccaatccaatatgggttctcgtgactcgtatgcag 155740
Score = 71.9 bits (36), Expect = 2e-09
Identities = 131/160 (81%), Gaps = 2/160 (1%)
Strand = Plus / Minus
Query: 211 cagacacatacgcaggcagaaaggaaggtgatagagtccaagagggagcttttgcttaag 270
||||||||||| || ||||||| |||| | || ||||| || | |||||||||||| |||
Sbjct: 155267 cagacacatacacaagcagaaaagaagatcatggagtctaaaaaggagcttttgctgaag 155208
Query: 271 gaaatacccagggtcaattcaatggatg-ctcatattcttaaggatagattagcaaaact 329
|| | | |||| ||||||||| || | |||| ||||||||||| || || |||||
Sbjct: 155207 gatgttgctagggccaattcaatagaggtctca-attcttaaggacaggttgtataaact 155149
Query: 330 tgattctgaaaaacctcgcccatatggcacaattcaagcg 369
|||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 155148 tgattctgaaaagcctcgtccatatgggacaattcaagcg 155109
>gb|AC137595.2 | Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
OSJNBa0094K23, complete sequence
Length = 167482
Score = 133 bits (67), Expect = 8e-28
Identities = 115/131 (87%)
Strand = Plus / Minus
Query: 30 aatctattaccacttctaccagcttctgaagaacaaggtggaagatgtggcagctgctcg 89
|||||||||| |||| |||||| |||| || ||||||||||||||| | |||| ||||||
Sbjct: 32638 aatctattactacttttaccagattctcaaaaacaaggtggaagatctagcagttgctcg 32579
Query: 90 tgggaaaaagggcctaggggatggcactgttgggatgttttcttggcttgttattgcagc 149
|| || ||||| ||||||||||| |||||||||||||| || ||||||| |||||||||
Sbjct: 32578 cggtaagaagggtctaggggatggtactgttgggatgttctcctggcttggtattgcagc 32519
Query: 150 tgttgctgggt 160
|||||||||||
Sbjct: 32518 tgttgctgggt 32508
Score = 107 bits (54), Expect = 4e-20
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 371 tccgggaagtctatcgtgaatcaggcataagtggattctggaaaggacttattccgacac 430
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 30868 tccgggaggtctaccgtgaatcaggcataagaggattctggaaaggacttattccaacac 30809
Query: 431 taattatggt 440
||||||||||
Sbjct: 30808 taattatggt 30799
Score = 93.7 bits (47), Expect = 7e-16
Identities = 62/67 (92%)
Strand = Plus / Minus
Query: 545 aggtatttttattaggtgcaatagcaaagctgggagctactgttgtgacctacccgttgt 604
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct: 29986 aggtattcttattaggtgcaatagcaaagctcggagctactgttgtgacatacccattgc 29927
Query: 605 tagtggt 611
|||||||
Sbjct: 29926 tagtggt 29920
Score = 89.7 bits (45), Expect = 1e-14
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 438 ggtatgcaatccatcaattcagtttatgatatatgaaacgctgtcaaagcgtctccagtc 497
|||||| |||||||||||||| |||||||| |||||||| || |||||||||||| |||
Sbjct: 30715 ggtatgtaatccatcaattcaatttatgatctatgaaacattggcaaagcgtctccggtc 30656
Query: 498 gaagcggtctggaaagcgattccccaagaagaacatcactgctatggaggtat 550
||| | ||||||||| | |||| || |||||| | ||||||||||||||||
Sbjct: 30655 aaagagatctggaaaggaactcccaaaaaagaaccttactgctatggaggtat 30603
Score = 71.9 bits (36), Expect = 2e-09
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 158 ggtcaatcaatgttcttcttacaattccaatatgggttcttgtcacacgtatgcag 213
|||||||||||||||||||||| | ||||||||||||||| || || |||||||||
Sbjct: 31976 ggtcaatcaatgttcttcttaccaatccaatatgggttctcgtgactcgtatgcag 31921
Score = 71.9 bits (36), Expect = 2e-09
Identities = 131/160 (81%), Gaps = 2/160 (1%)
Strand = Plus / Minus
Query: 211 cagacacatacgcaggcagaaaggaaggtgatagagtccaagagggagcttttgcttaag 270
||||||||||| || ||||||| |||| | || ||||| || | |||||||||||| |||
Sbjct: 31448 cagacacatacacaagcagaaaagaagatcatggagtctaaaaaggagcttttgctgaag 31389
Query: 271 gaaatacccagggtcaattcaatggatg-ctcatattcttaaggatagattagcaaaact 329
|| | | |||| ||||||||| || | |||| ||||||||||| || || |||||
Sbjct: 31388 gatgttgctagggccaattcaatagaggtctca-attcttaaggacaggttgtataaact 31330
Query: 330 tgattctgaaaaacctcgcccatatggcacaattcaagcg 369
|||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 31329 tgattctgaaaagcctcgtccatatgggacaattcaagcg 31290
>dbj|AP008215.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 133 bits (67), Expect = 8e-28
Identities = 115/131 (87%)
Strand = Plus / Minus
Query: 30 aatctattaccacttctaccagcttctgaagaacaaggtggaagatgtggcagctgctcg 89
|||||||||| |||| |||||| |||| || ||||||||||||||| | |||| ||||||
Sbjct: 19437231 aatctattactacttttaccagattctcaaaaacaaggtggaagatctagcagttgctcg 19437172
Query: 90 tgggaaaaagggcctaggggatggcactgttgggatgttttcttggcttgttattgcagc 149
|| || ||||| ||||||||||| |||||||||||||| || ||||||| |||||||||
Sbjct: 19437171 cggtaagaagggtctaggggatggtactgttgggatgttctcctggcttggtattgcagc 19437112
Query: 150 tgttgctgggt 160
|||||||||||
Sbjct: 19437111 tgttgctgggt 19437101
Score = 107 bits (54), Expect = 4e-20
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 371 tccgggaagtctatcgtgaatcaggcataagtggattctggaaaggacttattccgacac 430
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 19435461 tccgggaggtctaccgtgaatcaggcataagaggattctggaaaggacttattccaacac 19435402
Query: 431 taattatggt 440
||||||||||
Sbjct: 19435401 taattatggt 19435392
Score = 93.7 bits (47), Expect = 7e-16
Identities = 62/67 (92%)
Strand = Plus / Minus
Query: 545 aggtatttttattaggtgcaatagcaaagctgggagctactgttgtgacctacccgttgt 604
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct: 19434579 aggtattcttattaggtgcaatagcaaagctcggagctactgttgtgacatacccattgc 19434520
Query: 605 tagtggt 611
|||||||
Sbjct: 19434519 tagtggt 19434513
Score = 89.7 bits (45), Expect = 1e-14
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 438 ggtatgcaatccatcaattcagtttatgatatatgaaacgctgtcaaagcgtctccagtc 497
|||||| |||||||||||||| |||||||| |||||||| || |||||||||||| |||
Sbjct: 19435308 ggtatgtaatccatcaattcaatttatgatctatgaaacattggcaaagcgtctccggtc 19435249
Query: 498 gaagcggtctggaaagcgattccccaagaagaacatcactgctatggaggtat 550
||| | ||||||||| | |||| || |||||| | ||||||||||||||||
Sbjct: 19435248 aaagagatctggaaaggaactcccaaaaaagaaccttactgctatggaggtat 19435196
Score = 71.9 bits (36), Expect = 2e-09
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 158 ggtcaatcaatgttcttcttacaattccaatatgggttcttgtcacacgtatgcag 213
|||||||||||||||||||||| | ||||||||||||||| || || |||||||||
Sbjct: 19436569 ggtcaatcaatgttcttcttaccaatccaatatgggttctcgtgactcgtatgcag 19436514
Score = 71.9 bits (36), Expect = 2e-09
Identities = 131/160 (81%), Gaps = 2/160 (1%)
Strand = Plus / Minus
Query: 211 cagacacatacgcaggcagaaaggaaggtgatagagtccaagagggagcttttgcttaag 270
||||||||||| || ||||||| |||| | || ||||| || | |||||||||||| |||
Sbjct: 19436041 cagacacatacacaagcagaaaagaagatcatggagtctaaaaaggagcttttgctgaag 19435982
Query: 271 gaaatacccagggtcaattcaatggatg-ctcatattcttaaggatagattagcaaaact 329
|| | | |||| ||||||||| || | |||| ||||||||||| || || |||||
Sbjct: 19435981 gatgttgctagggccaattcaatagaggtctca-attcttaaggacaggttgtataaact 19435923
Query: 330 tgattctgaaaaacctcgcccatatggcacaattcaagcg 369
|||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 19435922 tgattctgaaaagcctcgtccatatgggacaattcaagcg 19435883
>dbj|AP008208.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 125 bits (63), Expect = 2e-25
Identities = 114/131 (87%)
Strand = Plus / Plus
Query: 30 aatctattaccacttctaccagcttctgaagaacaaggtggaagatgtggcagctgctcg 89
|||||||||| |||| |||||| |||| || ||||||||||||||| | |||| ||||||
Sbjct: 7019123 aatctattactacttttaccagattctcaaaaacaaggtggaagatctagcagttgctcg 7019182
Query: 90 tgggaaaaagggcctaggggatggcactgttgggatgttttcttggcttgttattgcagc 149
|| || ||||| ||||||||||| || ||||||||||| || ||||||| |||||||||
Sbjct: 7019183 cggtaagaagggtctaggggatggtaccgttgggatgttctcctggcttggtattgcagc 7019242
Query: 150 tgttgctgggt 160
|||||||||||
Sbjct: 7019243 tgttgctgggt 7019253
Score = 115 bits (58), Expect = 2e-22
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 371 tccgggaagtctatcgtgaatcaggcataagtggattctggaaaggacttattccgacac 430
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7021239 tccgggaggtctaccgtgaatcaggcataagaggattctggaaaggacttattccgacac 7021298
Query: 431 taattatggt 440
||||||||||
Sbjct: 7021299 taattatggt 7021308
Score = 93.7 bits (47), Expect = 7e-16
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 545 aggtatttttattaggtgcaatagcaaagctgggagctactgttgtgacctacccgttgt 604
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct: 7022126 aggtattcttattaggtgcaatagcaaagctcggagctactgttgtgacatacccattgc 7022185
Query: 605 tagtggt 611
|||||||
Sbjct: 7022186 tagtggt 7022192
Score = 87.7 bits (44), Expect = 4e-14
Identities = 133/160 (83%), Gaps = 2/160 (1%)
Strand = Plus / Plus
Query: 211 cagacacatacgcaggcagaaaggaaggtgatagagtccaagagggagcttttgcttaag 270
|||||||||||||| ||||||| |||| | || ||||| || | |||||||||||| |||
Sbjct: 7020642 cagacacatacgcaagcagaaaagaagatcatggagtctaaaaaggagcttttgctgaag 7020701
Query: 271 gaaatacccagggtcaattcaatggatg-ctcatattcttaaggatagattagcaaaact 329
|| | | |||| ||||||||| || | |||| |||||||||||||| || |||||
Sbjct: 7020702 gatgttgctagggccaattcaatagaggtctca-attcttaaggataggttgtataaact 7020760
Query: 330 tgattctgaaaaacctcgcccatatggcacaattcaagcg 369
|||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 7020761 tgattctgaaaagcctcgtccatatgggacaattcaagcg 7020800
Score = 81.8 bits (41), Expect = 2e-12
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 438 ggtatgcaatccatcaattcagtttatgatatatgaaacgctgtcaaagcgtctccagtc 497
|||||| ||||||||||| || |||||||| |||||||| || |||||||||||| |||
Sbjct: 7021391 ggtatgtaatccatcaatacaatttatgatctatgaaacattggcaaagcgtctccggtc 7021450
Query: 498 gaagcggtctggaaagcgattccccaagaagaacatcactgctatggaggtat 550
||| | ||||||||| | |||| || |||||| | ||||||||||||||||
Sbjct: 7021451 aaagagatctggaaaggaactcccaaaaaagaaccttactgctatggaggtat 7021503
Score = 71.9 bits (36), Expect = 2e-09
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 158 ggtcaatcaatgttcttcttacaattccaatatgggttcttgtcacacgtatgcag 213
|||||||||||||||||||||| | ||||||||||||||| || || |||||||||
Sbjct: 7020122 ggtcaatcaatgttcttcttaccaatccaatatgggttctcgtgactcgtatgcag 7020177
>dbj|AP005003.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0495C02
Length = 151467
Score = 125 bits (63), Expect = 2e-25
Identities = 114/131 (87%)
Strand = Plus / Plus
Query: 30 aatctattaccacttctaccagcttctgaagaacaaggtggaagatgtggcagctgctcg 89
|||||||||| |||| |||||| |||| || ||||||||||||||| | |||| ||||||
Sbjct: 22542 aatctattactacttttaccagattctcaaaaacaaggtggaagatctagcagttgctcg 22601
Query: 90 tgggaaaaagggcctaggggatggcactgttgggatgttttcttggcttgttattgcagc 149
|| || ||||| ||||||||||| || ||||||||||| || ||||||| |||||||||
Sbjct: 22602 cggtaagaagggtctaggggatggtaccgttgggatgttctcctggcttggtattgcagc 22661
Query: 150 tgttgctgggt 160
|||||||||||
Sbjct: 22662 tgttgctgggt 22672
Score = 115 bits (58), Expect = 2e-22
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 371 tccgggaagtctatcgtgaatcaggcataagtggattctggaaaggacttattccgacac 430
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 24658 tccgggaggtctaccgtgaatcaggcataagaggattctggaaaggacttattccgacac 24717
Query: 431 taattatggt 440
||||||||||
Sbjct: 24718 taattatggt 24727
Score = 93.7 bits (47), Expect = 7e-16
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 545 aggtatttttattaggtgcaatagcaaagctgggagctactgttgtgacctacccgttgt 604
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct: 25545 aggtattcttattaggtgcaatagcaaagctcggagctactgttgtgacatacccattgc 25604
Query: 605 tagtggt 611
|||||||
Sbjct: 25605 tagtggt 25611
Score = 87.7 bits (44), Expect = 4e-14
Identities = 133/160 (83%), Gaps = 2/160 (1%)
Strand = Plus / Plus
Query: 211 cagacacatacgcaggcagaaaggaaggtgatagagtccaagagggagcttttgcttaag 270
|||||||||||||| ||||||| |||| | || ||||| || | |||||||||||| |||
Sbjct: 24061 cagacacatacgcaagcagaaaagaagatcatggagtctaaaaaggagcttttgctgaag 24120
Query: 271 gaaatacccagggtcaattcaatggatg-ctcatattcttaaggatagattagcaaaact 329
|| | | |||| ||||||||| || | |||| |||||||||||||| || |||||
Sbjct: 24121 gatgttgctagggccaattcaatagaggtctca-attcttaaggataggttgtataaact 24179
Query: 330 tgattctgaaaaacctcgcccatatggcacaattcaagcg 369
|||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 24180 tgattctgaaaagcctcgtccatatgggacaattcaagcg 24219
Score = 81.8 bits (41), Expect = 2e-12
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 438 ggtatgcaatccatcaattcagtttatgatatatgaaacgctgtcaaagcgtctccagtc 497
|||||| ||||||||||| || |||||||| |||||||| || |||||||||||| |||
Sbjct: 24810 ggtatgtaatccatcaatacaatttatgatctatgaaacattggcaaagcgtctccggtc 24869
Query: 498 gaagcggtctggaaagcgattccccaagaagaacatcactgctatggaggtat 550
||| | ||||||||| | |||| || |||||| | ||||||||||||||||
Sbjct: 24870 aaagagatctggaaaggaactcccaaaaaagaaccttactgctatggaggtat 24922
Score = 71.9 bits (36), Expect = 2e-09
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 158 ggtcaatcaatgttcttcttacaattccaatatgggttcttgtcacacgtatgcag 213
|||||||||||||||||||||| | ||||||||||||||| || || |||||||||
Sbjct: 23541 ggtcaatcaatgttcttcttaccaatccaatatgggttctcgtgactcgtatgcag 23596
>dbj|AP004779.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0470A03
Length = 133167
Score = 125 bits (63), Expect = 2e-25
Identities = 114/131 (87%)
Strand = Plus / Plus
Query: 30 aatctattaccacttctaccagcttctgaagaacaaggtggaagatgtggcagctgctcg 89
|||||||||| |||| |||||| |||| || ||||||||||||||| | |||| ||||||
Sbjct: 112745 aatctattactacttttaccagattctcaaaaacaaggtggaagatctagcagttgctcg 112804
Query: 90 tgggaaaaagggcctaggggatggcactgttgggatgttttcttggcttgttattgcagc 149
|| || ||||| ||||||||||| || ||||||||||| || ||||||| |||||||||
Sbjct: 112805 cggtaagaagggtctaggggatggtaccgttgggatgttctcctggcttggtattgcagc 112864
Query: 150 tgttgctgggt 160
|||||||||||
Sbjct: 112865 tgttgctgggt 112875
Score = 115 bits (58), Expect = 2e-22
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 371 tccgggaagtctatcgtgaatcaggcataagtggattctggaaaggacttattccgacac 430
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 114861 tccgggaggtctaccgtgaatcaggcataagaggattctggaaaggacttattccgacac 114920
Query: 431 taattatggt 440
||||||||||
Sbjct: 114921 taattatggt 114930
Score = 93.7 bits (47), Expect = 7e-16
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 545 aggtatttttattaggtgcaatagcaaagctgggagctactgttgtgacctacccgttgt 604
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct: 115748 aggtattcttattaggtgcaatagcaaagctcggagctactgttgtgacatacccattgc 115807
Query: 605 tagtggt 611
|||||||
Sbjct: 115808 tagtggt 115814
Score = 87.7 bits (44), Expect = 4e-14
Identities = 133/160 (83%), Gaps = 2/160 (1%)
Strand = Plus / Plus
Query: 211 cagacacatacgcaggcagaaaggaaggtgatagagtccaagagggagcttttgcttaag 270
|||||||||||||| ||||||| |||| | || ||||| || | |||||||||||| |||
Sbjct: 114264 cagacacatacgcaagcagaaaagaagatcatggagtctaaaaaggagcttttgctgaag 114323
Query: 271 gaaatacccagggtcaattcaatggatg-ctcatattcttaaggatagattagcaaaact 329
|| | | |||| ||||||||| || | |||| |||||||||||||| || |||||
Sbjct: 114324 gatgttgctagggccaattcaatagaggtctca-attcttaaggataggttgtataaact 114382
Query: 330 tgattctgaaaaacctcgcccatatggcacaattcaagcg 369
|||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 114383 tgattctgaaaagcctcgtccatatgggacaattcaagcg 114422
Score = 81.8 bits (41), Expect = 2e-12
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 438 ggtatgcaatccatcaattcagtttatgatatatgaaacgctgtcaaagcgtctccagtc 497
|||||| ||||||||||| || |||||||| |||||||| || |||||||||||| |||
Sbjct: 115013 ggtatgtaatccatcaatacaatttatgatctatgaaacattggcaaagcgtctccggtc 115072
Query: 498 gaagcggtctggaaagcgattccccaagaagaacatcactgctatggaggtat 550
||| | ||||||||| | |||| || |||||| | ||||||||||||||||
Sbjct: 115073 aaagagatctggaaaggaactcccaaaaaagaaccttactgctatggaggtat 115125
Score = 71.9 bits (36), Expect = 2e-09
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 158 ggtcaatcaatgttcttcttacaattccaatatgggttcttgtcacacgtatgcag 213
|||||||||||||||||||||| | ||||||||||||||| || || |||||||||
Sbjct: 113744 ggtcaatcaatgttcttcttaccaatccaatatgggttctcgtgactcgtatgcag 113799
>emb|AL606500.8 | Human DNA sequence from clone RP11-274N19 on chromosome 1 Contains the 3'
end of the KCNN3 gene for potassium intermediate/small
conductance calcium-activated channel, subfamily N, member
3, a novel gene and the 5' end of the ADAR gene for
adenosine deaminase, RNA-specific, complete sequence
Length = 173014
Score = 42.1 bits (21), Expect = 2.1
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 53 ttctgaagaacaaggtggaag 73
|||||||||||||||||||||
Sbjct: 101475 ttctgaagaacaaggtggaag 101455
>emb|AL591913.14 | Mouse DNA sequence from clone RP23-120A4 on chromosome 15, complete
sequence
Length = 196812
Score = 40.1 bits (20), Expect = 8.5
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 268 aaggaaatacccagggtcaattca 291
||||||| ||||||||||||||||
Sbjct: 10700 aaggaaagacccagggtcaattca 10677
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,575,373
Number of Sequences: 3902068
Number of extensions: 5575373
Number of successful extensions: 103126
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102900
Number of HSP's gapped (non-prelim): 218
length of query: 622
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 599
effective length of database: 17,143,297,704
effective search space: 10268835324696
effective search space used: 10268835324696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)