ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal19j12 |
|---|---|
| Clone Library Name | barley_pub |
>PAO_ARATH (Q9FYC2) Pheophorbide a oxygenase, chloroplast precursor (EC| 1.-.-.-) (Pheide a oxygenase) (AtPaO) (Accelerated cell death 1) (Lethal leaf-spot 1 homolog) (Lls1) Length = 537 Score = 76.3 bits (186), Expect = 4e-14 Identities = 56/175 (32%), Positives = 81/175 (46%), Gaps = 11/175 (6%) Frame = +1 Query: 4 EIDDPSFVTVYGVRDLPYGYDVLVENLMDPAHVPYAHKGLMGKLRKKEDPGRVEFDVEGG 183 + D P F TV RDL YGYD L+EN+ DP+H+ +AH + G+ R + P + F VE Sbjct: 221 DFDKPEFSTVTIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGR-RDRAKP--LPFKVESS 277 Query: 184 GPVKMKIAEADIAGFLSEQDNSGYF--RYVAPCTFYGSPLXXXXXXXXXXXXXXXQFMLV 357 GP GF D+S ++VAPC Q ++ Sbjct: 278 GP----------WGFQGANDDSPRITAKFVAPCYSMNK-----IELDAKLPIVGNQKWVI 322 Query: 358 FMC---VPVSPGKSRVIWAFPRNI------GVWLDKVIPRWYYHIGQNAILDSDI 495 ++C +P++PGK+R I RN G +V+PRWY H N + D D+ Sbjct: 323 WICSFNIPMAPGKTRSIVCSARNFFQFSVPGPAWWQVVPRWYEHWTSNLVYDGDM 377
>CAO_ARATH (Q9MBA1) Chlorophyllide a oxygenase, chloroplast precursor (EC| 1.-.-.-) (Chlorophyll a oxygenase) (Chlorophyll b synthase) Length = 536 Score = 33.1 bits (74), Expect = 0.43 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 40 VRDLPYGYDVLVENLMDPAHVPYAHKGLMGK 132 V DLP + +L++NL+D AH P+ H K Sbjct: 348 VMDLPVEHGLLLDNLLDLAHAPFTHTSTFAK 378
>VANA_PSEUH (O05616) Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)| (4-hydroxy-3-methoxybenzoate demethylase) Length = 354 Score = 32.7 bits (73), Expect = 0.56 Identities = 18/57 (31%), Positives = 29/57 (50%) Frame = +1 Query: 10 DDPSFVTVYGVRDLPYGYDVLVENLMDPAHVPYAHKGLMGKLRKKEDPGRVEFDVEG 180 D+P + G+ + Y ++++NLMD H Y H +G +K+ D V VEG Sbjct: 127 DNPEWAYGGGLYHIACDYRLMIDNLMDLTHETYVHASSIG--QKEIDEAPVSTRVEG 181
>TSP4_BRARE (Q8JGW0) Thrombospondin-4 precursor (Thbs4)| Length = 949 Score = 32.3 bits (72), Expect = 0.73 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +1 Query: 391 RVIWAFPRNIGVWLDKVIPRWY 456 R++W PRN+G W DKV RWY Sbjct: 853 RLLWKDPRNVG-WKDKVSYRWY 873
>VANA_PSES9 (P12609) Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)| (4-hydroxy-3-methoxybenzoate demethylase) Length = 329 Score = 32.3 bits (72), Expect = 0.73 Identities = 19/71 (26%), Positives = 35/71 (49%) Frame = +1 Query: 10 DDPSFVTVYGVRDLPYGYDVLVENLMDPAHVPYAHKGLMGKLRKKEDPGRVEFDVEGGGP 189 ++P++ G+ + Y ++++NLMD H Y H +G +K+ D V VEG Sbjct: 104 ENPAWAYGGGLYHIACDYRLMIDNLMDLTHETYVHASSIG--QKEIDEAPVSTRVEGDRL 161 Query: 190 VKMKIAEADIA 222 + + E +A Sbjct: 162 ITGRFMEGILA 172
>TSP3_BRARE (Q8JHW2) Thrombospondin-3 precursor (Thbs3)| Length = 962 Score = 31.2 bits (69), Expect = 1.6 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +1 Query: 382 GKSRVIWAFPRNIGVWLDKVIPRW 453 G+ +++W PRN+G WLDK RW Sbjct: 862 GEVKLLWKDPRNVG-WLDKTSYRW 884
>TSP2_HUMAN (P35442) Thrombospondin-2 precursor| Length = 1172 Score = 31.2 bits (69), Expect = 1.6 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 376 SPGKSRVIWAFPRNIGVWLDKVIPRWY 456 +PG+ R +W PRNIG W D RW+ Sbjct: 1088 TPGQVRTLWHDPRNIG-WKDYTAYRWH 1113
>TSP3_HUMAN (P49746) Thrombospondin-3 precursor| Length = 956 Score = 30.8 bits (68), Expect = 2.1 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +1 Query: 376 SPGKSRVIWAFPRNIGVWLDKVIPRW 453 +P + R++W PRN+G W DK RW Sbjct: 855 TPDQVRLLWTDPRNVG-WRDKTSYRW 879
>TSP4_XENLA (Q06441) Thrombospondin-4 precursor| Length = 955 Score = 30.8 bits (68), Expect = 2.1 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +1 Query: 391 RVIWAFPRNIGVWLDKVIPRWY 456 R++W PRN+G W DKV RW+ Sbjct: 861 RLLWKDPRNVG-WKDKVSYRWF 881
>TSP2_CHICK (P35440) Thrombospondin-2 precursor| Length = 1178 Score = 30.0 bits (66), Expect = 3.6 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +1 Query: 376 SPGKSRVIWAFPRNIGVWLDKVIPRWY 456 +PG+ R +W P+NIG W D RW+ Sbjct: 1094 TPGQVRTLWHDPKNIG-WKDYTAYRWH 1119
>CHMO_ARATH (Q9SZR0) Probable choline monooxygenase, chloroplast precursor (EC| 1.14.15.7) Length = 422 Score = 29.6 bits (65), Expect = 4.7 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Frame = +1 Query: 61 YDVLVENLMDPA-HVPYAHKGLMGKL 135 + V +N +D HVPYAHKGLM L Sbjct: 256 WKVFCDNYLDGGYHVPYAHKGLMSGL 281
>GLGB_SOLTU (P30924) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Starch| branching enzyme) (Q-enzyme) Length = 861 Score = 29.6 bits (65), Expect = 4.7 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +1 Query: 370 PVSPGKSRVIWAFPRNIGVWLDKVIPRW 453 PV P SRV + F GVW+D+ IP W Sbjct: 199 PVIPHNSRVKFRFKHGNGVWVDR-IPAW 225
>COMP_RAT (P35444) Cartilage oligomeric matrix protein precursor (COMP)| Length = 755 Score = 29.3 bits (64), Expect = 6.2 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +1 Query: 391 RVIWAFPRNIGVWLDKVIPRWY 456 R++W PRN+G W DK RW+ Sbjct: 663 RLLWKDPRNVG-WKDKTSYRWF 683
>COMP_MOUSE (Q9R0G6) Cartilage oligomeric matrix protein precursor (COMP)| Length = 755 Score = 29.3 bits (64), Expect = 6.2 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +1 Query: 391 RVIWAFPRNIGVWLDKVIPRWY 456 R++W PRN+G W DK RW+ Sbjct: 663 RLLWKDPRNVG-WKDKTSYRWF 683
>PRRT1_HUMAN (Q99946) Proline-rich transmembrane protein 1| Length = 306 Score = 29.3 bits (64), Expect = 6.2 Identities = 13/36 (36%), Positives = 17/36 (47%) Frame = -3 Query: 453 PPRYDLVEPDADVPRERPDHPALPRRHRDAHEHQHE 346 PP Y+ +P A+ P P A P H H H H+ Sbjct: 17 PPPYNAPQPPAEPPAPPPQ--AAPSSHHHHHHHYHQ 50
>COMP_BOVIN (P35445) Cartilage oligomeric matrix protein (COMP) (Fragment)| Length = 439 Score = 29.3 bits (64), Expect = 6.2 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +1 Query: 391 RVIWAFPRNIGVWLDKVIPRWY 456 R++W PRN+G W DK RW+ Sbjct: 347 RLLWKDPRNVG-WKDKTSYRWF 367
>SC24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-related protein A)| (Fragment) Length = 1078 Score = 28.9 bits (63), Expect = 8.1 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%) Frame = -1 Query: 236 SDRNPAISASAIFIFTGPPPSTSNSTLPGSSFL----RSLPMSPLCA*GTCAGSMRFSTS 69 +++NP +S S + + PP N+T PG++ + + P P T G+ +TS Sbjct: 263 TNKNPKMSRSVGYSYPSLPPGYQNTTPPGATGVPPSSLNYPSGPQAFTQTPLGANHLTTS 322 Query: 68 TSYP*GRSLTP 36 S G SL P Sbjct: 323 MS---GLSLQP 330
>GLNE_VIBCH (Q9KPD4) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 948 Score = 28.9 bits (63), Expect = 8.1 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 12/82 (14%) Frame = +1 Query: 61 YDVLVENLMDPAHV--PYAHKGLMGKLRK------KEDPGRVEFDVEGGGPVK----MKI 204 Y +L++ L+DP H+ P + +LR +ED +E +EG K ++I Sbjct: 576 YPILLDELIDPQHLYNPIPLESYQTELRDFLARIPEED---MEQQMEGLRQFKQISILRI 632 Query: 205 AEADIAGFLSEQDNSGYFRYVA 270 A ADIAG L S + Y+A Sbjct: 633 AAADIAGVLPVMKVSDHLTYLA 654 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,049,201 Number of Sequences: 219361 Number of extensions: 1333995 Number of successful extensions: 4708 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4501 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4695 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
