ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal19j12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470012.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1912 Score = 204 bits (103), Expect = 2e-49 Identities = 177/201 (88%), Gaps = 3/201 (1%) Strand = Plus / Plus Query: 5 agatcgacgacccctccttcgtcaccgtctacggcgtcagggacctcccctacgggtacg 64 ||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||| Sbjct: 715 agatcgacgacccgtccttcgtcaccgtctatggcgtcagggatctcccctatgggtacg 774 Query: 65 atgtgctggtggagaacctcatggaccctgcacacgtcccctacgcgcacaaggggctca 124 ||||| |||||||||| |||||||||||||| || ||||||||||||||||||||| | | Sbjct: 775 atgtgttggtggagaatctcatggaccctgctcatgtcccctacgcgcacaaggggttga 834 Query: 125 tgggcaagcttcgcaagaaggaagacccaggaagagttgagttcgacgtcgaaggcggcg 184 || ||| |||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct: 835 tgcgca---cccgcaagaaggaagatccaggaagagttgagttcgacaaggaaggcggcg 891 Query: 185 ggccagtgaagatgaagatag 205 |||| | |||||| |||||| Sbjct: 892 ggccgctcaagatggagatag 912 Score = 159 bits (80), Expect = 1e-35 Identities = 134/152 (88%) Strand = Plus / Plus Query: 349 atgctggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctgggcgttc 408 |||||||||||| ||||| |||||||||||||||||| ||||||| || ||||||| ||| Sbjct: 1059 atgctggtgttcttgtgcatcccggtgtctccggggaggagcaggttggtctgggcattc 1118 Query: 409 ccgaggaacatcggcgtctggctcgacaaggtcataccgcggtggtactaccacatcggc 468 ||| ||||| ||||||||||| | |||||| ||||||| ||||||||||||||||| || Sbjct: 1119 ccgcggaacgtcggcgtctggatggacaagatcataccacggtggtactaccacattggg 1178 Query: 469 cagaacgctatcctggactcagacatctacct 500 ||||| || ||| |||| |||||||||||||| Sbjct: 1179 cagaatgccatcttggattcagacatctacct 1210 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 264 cgtcgcgccgtgcaccttctacggctcgcc 293 ||||||||||||||| |||||||||||||| Sbjct: 968 cgtcgcgccgtgcacgttctacggctcgcc 997
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 159 bits (80), Expect = 1e-35 Identities = 134/152 (88%) Strand = Plus / Plus Query: 349 atgctggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctgggcgttc 408 |||||||||||| ||||| |||||||||||||||||| ||||||| || ||||||| ||| Sbjct: 33336148 atgctggtgttcttgtgcatcccggtgtctccggggaggagcaggttggtctgggcattc 33336207 Query: 409 ccgaggaacatcggcgtctggctcgacaaggtcataccgcggtggtactaccacatcggc 468 ||| ||||| ||||||||||| | |||||| ||||||| ||||||||||||||||| || Sbjct: 33336208 ccgcggaacgtcggcgtctggatggacaagatcataccacggtggtactaccacattggg 33336267 Query: 469 cagaacgctatcctggactcagacatctacct 500 ||||| || ||| |||| |||||||||||||| Sbjct: 33336268 cagaatgccatcttggattcagacatctacct 33336299 Score = 93.7 bits (47), Expect = 5e-16 Identities = 88/101 (87%), Gaps = 3/101 (2%) Strand = Plus / Plus Query: 59 ggtacgatgtgctggtggagaacctcatggaccctgcacacgtcccctacgcgcacaagg 118 ||||||||||| |||||||||| |||||||||||||| || ||||||||||||||||||| Sbjct: 33335641 ggtacgatgtgttggtggagaatctcatggaccctgctcatgtcccctacgcgcacaagg 33335700 Query: 119 ggctcatgggcaagcttcgcaagaaggaagacccaggaaga 159 || | ||| ||| |||||||||||||| ||||||||| Sbjct: 33335701 ggttgatgcgca---cccgcaagaaggaagatccaggaaga 33335738 Score = 89.7 bits (45), Expect = 8e-15 Identities = 51/53 (96%) Strand = Plus / Plus Query: 71 tggtggagaacctcatggaccctgcacacgtcccctacgcgcacaaggggctc 123 ||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 33342298 tggtggagaacctcatggaccctgctcacgtcccctacgcacacaaggggctc 33342350 Score = 87.7 bits (44), Expect = 3e-14 Identities = 50/52 (96%) Strand = Plus / Plus Query: 71 tggtggagaacctcatggaccctgcacacgtcccctacgcgcacaaggggct 122 ||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 33380582 tggtggagaacctcatggaccctgctcacgtcccctacgcacacaaggggct 33380633 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 5 agatcgacgacccctccttcgtcaccgtctacggcgtcagggacctcccctacgggtac 63 ||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||| Sbjct: 33335487 agatcgacgacccgtccttcgtcaccgtctatggcgtcagggatctcccctatgggtac 33335545 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 59 ggtacgatgtgctggtggagaacctcatggaccctgcacacgtcccctacgcgcacaagg 118 ||||||| ||| |||||||||| || ||||||||||| || ||||| ||||||||||||| Sbjct: 33346635 ggtacgacgtgttggtggagaatcttatggaccctgctcatgtcccatacgcgcacaagg 33346694 Query: 119 ggct 122 |||| Sbjct: 33346695 ggct 33346698 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 354 ggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctgggcgttcccgag 413 ||||||| |||||||||||||| ||||||| | |||||| |||| |||||||||||| | Sbjct: 33348517 ggtgttcttgtgcgtcccggtggctccgggaagaagcaggttgatatgggcgttcccgcg 33348576 Query: 414 gaa 416 ||| Sbjct: 33348577 gaa 33348579 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 71 tggtggagaacctcatggaccctgcacacgtcccctacgcgcaca 115 |||||||||| ||||||||||||| ||||| ||||||||||||| Sbjct: 33356629 tggtggagaatttcatggaccctgctcacgttccctacgcgcaca 33356673 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 27 caccgtctacggcgtcagggacctcccctacgggtac 63 |||||||| ||||||||||||| |||||||||||||| Sbjct: 33342166 caccgtcttcggcgtcagggacttcccctacgggtac 33342202 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 264 cgtcgcgccgtgcaccttctacggctcgcc 293 ||||||||||||||| |||||||||||||| Sbjct: 33335978 cgtcgcgccgtgcacgttctacggctcgcc 33336007 Score = 48.1 bits (24), Expect = 0.028 Identities = 48/56 (85%) Strand = Plus / Plus Query: 8 tcgacgacccctccttcgtcaccgtctacggcgtcagggacctcccctacgggtac 63 |||| ||||| |||||| ||| |||| |||||||||||||||| |||||||||| Sbjct: 33346180 tcgatgacccgtccttcaacacagtcttcggcgtcagggacctcttctacgggtac 33346235 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Plus Query: 349 atgctggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctggg 403 |||||||||||| ||||| |||| ||| |||| || | |||||||||||| |||| Sbjct: 33342781 atgctggtgttcttgtgcatccctgtggctcctggaaggagcagggtgatatggg 33342835 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Plus Query: 179 gcggcgggccagtgaagatgaagatagcggaggcggatatcgccgggttcctgtc 233 ||||||| || || ||||||||||||| |||||| | |||| |||||||||||| Sbjct: 33342533 gcggcggcccggtcaagatgaagatagaggaggccaacatcgacgggttcctgtc 33342587 Score = 40.1 bits (20), Expect = 6.8 Identities = 46/52 (88%), Gaps = 2/52 (3%) Strand = Plus / Plus Query: 355 gtgttcatgtgcgtcccggtgtctccggggaaga-gcagggtgatctgggcg 405 |||||| | ||| ||||||||||||| ||||||| ||||||| ||||||||| Sbjct: 33357137 gtgttcttctgcatcccggtgtctcc-gggaagatgcagggtcatctgggcg 33357187
>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete sequence Length = 122815 Score = 159 bits (80), Expect = 1e-35 Identities = 134/152 (88%) Strand = Plus / Plus Query: 349 atgctggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctgggcgttc 408 |||||||||||| ||||| |||||||||||||||||| ||||||| || ||||||| ||| Sbjct: 92664 atgctggtgttcttgtgcatcccggtgtctccggggaggagcaggttggtctgggcattc 92723 Query: 409 ccgaggaacatcggcgtctggctcgacaaggtcataccgcggtggtactaccacatcggc 468 ||| ||||| ||||||||||| | |||||| ||||||| ||||||||||||||||| || Sbjct: 92724 ccgcggaacgtcggcgtctggatggacaagatcataccacggtggtactaccacattggg 92783 Query: 469 cagaacgctatcctggactcagacatctacct 500 ||||| || ||| |||| |||||||||||||| Sbjct: 92784 cagaatgccatcttggattcagacatctacct 92815 Score = 93.7 bits (47), Expect = 5e-16 Identities = 88/101 (87%), Gaps = 3/101 (2%) Strand = Plus / Plus Query: 59 ggtacgatgtgctggtggagaacctcatggaccctgcacacgtcccctacgcgcacaagg 118 ||||||||||| |||||||||| |||||||||||||| || ||||||||||||||||||| Sbjct: 92157 ggtacgatgtgttggtggagaatctcatggaccctgctcatgtcccctacgcgcacaagg 92216 Query: 119 ggctcatgggcaagcttcgcaagaaggaagacccaggaaga 159 || | ||| ||| |||||||||||||| ||||||||| Sbjct: 92217 ggttgatgcgca---cccgcaagaaggaagatccaggaaga 92254 Score = 89.7 bits (45), Expect = 8e-15 Identities = 51/53 (96%) Strand = Plus / Plus Query: 71 tggtggagaacctcatggaccctgcacacgtcccctacgcgcacaaggggctc 123 ||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 98814 tggtggagaacctcatggaccctgctcacgtcccctacgcacacaaggggctc 98866 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 5 agatcgacgacccctccttcgtcaccgtctacggcgtcagggacctcccctacgggtac 63 ||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||| Sbjct: 92003 agatcgacgacccgtccttcgtcaccgtctatggcgtcagggatctcccctatgggtac 92061 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 59 ggtacgatgtgctggtggagaacctcatggaccctgcacacgtcccctacgcgcacaagg 118 ||||||| ||| |||||||||| || ||||||||||| || ||||| ||||||||||||| Sbjct: 103151 ggtacgacgtgttggtggagaatcttatggaccctgctcatgtcccatacgcgcacaagg 103210 Query: 119 ggct 122 |||| Sbjct: 103211 ggct 103214 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 354 ggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctgggcgttcccgag 413 ||||||| |||||||||||||| ||||||| | |||||| |||| |||||||||||| | Sbjct: 105033 ggtgttcttgtgcgtcccggtggctccgggaagaagcaggttgatatgggcgttcccgcg 105092 Query: 414 gaa 416 ||| Sbjct: 105093 gaa 105095 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 71 tggtggagaacctcatggaccctgcacacgtcccctacgcgcaca 115 |||||||||| ||||||||||||| ||||| ||||||||||||| Sbjct: 113145 tggtggagaatttcatggaccctgctcacgttccctacgcgcaca 113189 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 27 caccgtctacggcgtcagggacctcccctacgggtac 63 |||||||| ||||||||||||| |||||||||||||| Sbjct: 98682 caccgtcttcggcgtcagggacttcccctacgggtac 98718 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 264 cgtcgcgccgtgcaccttctacggctcgcc 293 ||||||||||||||| |||||||||||||| Sbjct: 92494 cgtcgcgccgtgcacgttctacggctcgcc 92523 Score = 48.1 bits (24), Expect = 0.028 Identities = 48/56 (85%) Strand = Plus / Plus Query: 8 tcgacgacccctccttcgtcaccgtctacggcgtcagggacctcccctacgggtac 63 |||| ||||| |||||| ||| |||| |||||||||||||||| |||||||||| Sbjct: 102696 tcgatgacccgtccttcaacacagtcttcggcgtcagggacctcttctacgggtac 102751 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Plus Query: 349 atgctggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctggg 403 |||||||||||| ||||| |||| ||| |||| || | |||||||||||| |||| Sbjct: 99297 atgctggtgttcttgtgcatccctgtggctcctggaaggagcagggtgatatggg 99351 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Plus Query: 179 gcggcgggccagtgaagatgaagatagcggaggcggatatcgccgggttcctgtc 233 ||||||| || || ||||||||||||| |||||| | |||| |||||||||||| Sbjct: 99049 gcggcggcccggtcaagatgaagatagaggaggccaacatcgacgggttcctgtc 99103 Score = 40.1 bits (20), Expect = 6.8 Identities = 46/52 (88%), Gaps = 2/52 (3%) Strand = Plus / Plus Query: 355 gtgttcatgtgcgtcccggtgtctccggggaaga-gcagggtgatctgggcg 405 |||||| | ||| ||||||||||||| ||||||| ||||||| ||||||||| Sbjct: 113653 gtgttcttctgcatcccggtgtctcc-gggaagatgcagggtcatctgggcg 113703
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 159 bits (80), Expect = 1e-35 Identities = 134/152 (88%) Strand = Plus / Plus Query: 349 atgctggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctgggcgttc 408 |||||||||||| ||||| |||||||||||||||||| ||||||| || ||||||| ||| Sbjct: 33426658 atgctggtgttcttgtgcatcccggtgtctccggggaggagcaggttggtctgggcattc 33426717 Query: 409 ccgaggaacatcggcgtctggctcgacaaggtcataccgcggtggtactaccacatcggc 468 ||| ||||| ||||||||||| | |||||| ||||||| ||||||||||||||||| || Sbjct: 33426718 ccgcggaacgtcggcgtctggatggacaagatcataccacggtggtactaccacattggg 33426777 Query: 469 cagaacgctatcctggactcagacatctacct 500 ||||| || ||| |||| |||||||||||||| Sbjct: 33426778 cagaatgccatcttggattcagacatctacct 33426809 Score = 93.7 bits (47), Expect = 5e-16 Identities = 88/101 (87%), Gaps = 3/101 (2%) Strand = Plus / Plus Query: 59 ggtacgatgtgctggtggagaacctcatggaccctgcacacgtcccctacgcgcacaagg 118 ||||||||||| |||||||||| |||||||||||||| || ||||||||||||||||||| Sbjct: 33426151 ggtacgatgtgttggtggagaatctcatggaccctgctcatgtcccctacgcgcacaagg 33426210 Query: 119 ggctcatgggcaagcttcgcaagaaggaagacccaggaaga 159 || | ||| ||| |||||||||||||| ||||||||| Sbjct: 33426211 ggttgatgcgca---cccgcaagaaggaagatccaggaaga 33426248 Score = 89.7 bits (45), Expect = 8e-15 Identities = 51/53 (96%) Strand = Plus / Plus Query: 71 tggtggagaacctcatggaccctgcacacgtcccctacgcgcacaaggggctc 123 ||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 33432808 tggtggagaacctcatggaccctgctcacgtcccctacgcacacaaggggctc 33432860 Score = 87.7 bits (44), Expect = 3e-14 Identities = 50/52 (96%) Strand = Plus / Plus Query: 71 tggtggagaacctcatggaccctgcacacgtcccctacgcgcacaaggggct 122 ||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 33471092 tggtggagaacctcatggaccctgctcacgtcccctacgcacacaaggggct 33471143 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 5 agatcgacgacccctccttcgtcaccgtctacggcgtcagggacctcccctacgggtac 63 ||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||| Sbjct: 33425997 agatcgacgacccgtccttcgtcaccgtctatggcgtcagggatctcccctatgggtac 33426055 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 59 ggtacgatgtgctggtggagaacctcatggaccctgcacacgtcccctacgcgcacaagg 118 ||||||| ||| |||||||||| || ||||||||||| || ||||| ||||||||||||| Sbjct: 33437145 ggtacgacgtgttggtggagaatcttatggaccctgctcatgtcccatacgcgcacaagg 33437204 Query: 119 ggct 122 |||| Sbjct: 33437205 ggct 33437208 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 354 ggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctgggcgttcccgag 413 ||||||| |||||||||||||| ||||||| | |||||| |||| |||||||||||| | Sbjct: 33439027 ggtgttcttgtgcgtcccggtggctccgggaagaagcaggttgatatgggcgttcccgcg 33439086 Query: 414 gaa 416 ||| Sbjct: 33439087 gaa 33439089 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 71 tggtggagaacctcatggaccctgcacacgtcccctacgcgcaca 115 |||||||||| ||||||||||||| ||||| ||||||||||||| Sbjct: 33447139 tggtggagaatttcatggaccctgctcacgttccctacgcgcaca 33447183 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 27 caccgtctacggcgtcagggacctcccctacgggtac 63 |||||||| ||||||||||||| |||||||||||||| Sbjct: 33432676 caccgtcttcggcgtcagggacttcccctacgggtac 33432712 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 264 cgtcgcgccgtgcaccttctacggctcgcc 293 ||||||||||||||| |||||||||||||| Sbjct: 33426488 cgtcgcgccgtgcacgttctacggctcgcc 33426517 Score = 48.1 bits (24), Expect = 0.028 Identities = 48/56 (85%) Strand = Plus / Plus Query: 8 tcgacgacccctccttcgtcaccgtctacggcgtcagggacctcccctacgggtac 63 |||| ||||| |||||| ||| |||| |||||||||||||||| |||||||||| Sbjct: 33436690 tcgatgacccgtccttcaacacagtcttcggcgtcagggacctcttctacgggtac 33436745 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Plus Query: 349 atgctggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctggg 403 |||||||||||| ||||| |||| ||| |||| || | |||||||||||| |||| Sbjct: 33433291 atgctggtgttcttgtgcatccctgtggctcctggaaggagcagggtgatatggg 33433345 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Plus Query: 179 gcggcgggccagtgaagatgaagatagcggaggcggatatcgccgggttcctgtc 233 ||||||| || || ||||||||||||| |||||| | |||| |||||||||||| Sbjct: 33433043 gcggcggcccggtcaagatgaagatagaggaggccaacatcgacgggttcctgtc 33433097 Score = 40.1 bits (20), Expect = 6.8 Identities = 46/52 (88%), Gaps = 2/52 (3%) Strand = Plus / Plus Query: 355 gtgttcatgtgcgtcccggtgtctccggggaaga-gcagggtgatctgggcg 405 |||||| | ||| ||||||||||||| ||||||| ||||||| ||||||||| Sbjct: 33447647 gtgttcttctgcatcccggtgtctcc-gggaagatgcagggtcatctgggcg 33447697
>ref|XM_470017.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1668 Score = 109 bits (55), Expect = 9e-21 Identities = 100/115 (86%) Strand = Plus / Plus Query: 8 tcgacgacccctccttcgtcaccgtctacggcgtcagggacctcccctacgggtacgatg 67 |||| ||||| |||||| ||| |||| |||||||||||||||| |||||||||||| | Sbjct: 674 tcgatgacccgtccttcaacacagtcttcggcgtcagggacctcttctacgggtacgacg 733 Query: 68 tgctggtggagaacctcatggaccctgcacacgtcccctacgcgcacaaggggct 122 || |||||||||| || ||||||||||| || ||||| ||||||||||||||||| Sbjct: 734 tgttggtggagaatcttatggaccctgctcatgtcccatacgcgcacaaggggct 788 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 354 ggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctgggcgttcccgag 413 ||||||| |||||||||||||| ||||||| | |||||| |||| |||||||||||| | Sbjct: 1062 ggtgttcttgtgcgtcccggtggctccgggaagaagcaggttgatatgggcgttcccgcg 1121 Query: 414 gaa 416 ||| Sbjct: 1122 gaa 1124
>ref|XM_470014.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1659 Score = 109 bits (55), Expect = 9e-21 Identities = 100/115 (86%) Strand = Plus / Plus Query: 8 tcgacgacccctccttcgtcaccgtctacggcgtcagggacctcccctacgggtacgatg 67 |||| ||||| |||||| ||| |||| |||||||||||||||| |||||||||||| | Sbjct: 674 tcgatgacccgtccttcaacacagtcttcggcgtcagggacctcttctacgggtacgacg 733 Query: 68 tgctggtggagaacctcatggaccctgcacacgtcccctacgcgcacaaggggct 122 || |||||||||| || ||||||||||| || ||||| ||||||||||||||||| Sbjct: 734 tgttggtggagaatcttatggaccctgctcatgtcccatacgcgcacaaggggct 788 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 354 ggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctgggcgttcccgag 413 ||||||| |||||||||||||| ||||||| | |||||| |||| |||||||||||| | Sbjct: 1053 ggtgttcttgtgcgtcccggtggctccgggaagaagcaggttgatatgggcgttcccgcg 1112 Query: 414 gaa 416 ||| Sbjct: 1113 gaa 1115
>ref|XM_470021.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1536 Score = 103 bits (52), Expect = 5e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 31 gtctacggcgtcagggacctcccctacgggtacgatgtgctggtggagaacctcatggac 90 |||||||| |||||||||||| |||||||| || || |||||||||||||||||||| Sbjct: 373 gtctacggtgtcagggacctcttatacgggtatgagttgttggtggagaacctcatggac 432 Query: 91 cctgcacacgtcccctacgcgcacaaggggct 122 ||||| |||||||||||||| ||||||||||| Sbjct: 433 cctgctcacgtcccctacgcacacaaggggct 464
>ref|XM_470013.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1584 Score = 97.6 bits (49), Expect = 3e-17 Identities = 64/69 (92%) Strand = Plus / Plus Query: 27 caccgtctacggcgtcagggacctcccctacgggtacgatgtgctggtggagaacctcat 86 |||||||| ||||||||||||| |||||||||||||||| || |||||||||||||||| Sbjct: 678 caccgtcttcggcgtcagggacttcccctacgggtacgacatgttggtggagaacctcat 737 Query: 87 ggaccctgc 95 ||||||||| Sbjct: 738 ggaccctgc 746 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Plus Query: 349 atgctggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctggg 403 |||||||||||| ||||| |||| ||| |||| || | |||||||||||| |||| Sbjct: 970 atgctggtgttcttgtgcatccctgtggctcctggaaggagcagggtgatatggg 1024 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Plus Query: 179 gcggcgggccagtgaagatgaagatagcggaggcggatatcgccgggttcctgtc 233 ||||||| || || ||||||||||||| |||||| | |||| |||||||||||| Sbjct: 791 gcggcggcccggtcaagatgaagatagaggaggccaacatcgacgggttcctgtc 845
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete sequence Length = 154555 Score = 87.7 bits (44), Expect = 3e-14 Identities = 50/52 (96%) Strand = Plus / Minus Query: 71 tggtggagaacctcatggaccctgcacacgtcccctacgcgcacaaggggct 122 ||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 117529 tggtggagaacctcatggaccctgctcacgtcccctacgcacacaaggggct 117478 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 59 ggtacgatgtgctggtggagaacctcatggaccctgcacacgtcccctacgcgcacaagg 118 ||||||| ||| |||||||||| || ||||||||||| || ||||| ||||||||||||| Sbjct: 151476 ggtacgacgtgttggtggagaatcttatggaccctgctcatgtcccatacgcgcacaagg 151417 Query: 119 ggct 122 |||| Sbjct: 151416 ggct 151413 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 354 ggtgttcatgtgcgtcccggtgtctccggggaagagcagggtgatctgggcgttcccgag 413 ||||||| |||||||||||||| ||||||| | |||||| |||| |||||||||||| | Sbjct: 149594 ggtgttcttgtgcgtcccggtggctccgggaagaagcaggttgatatgggcgttcccgcg 149535 Query: 414 gaa 416 ||| Sbjct: 149534 gaa 149532 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 71 tggtggagaacctcatggaccctgcacacgtcccctacgcgcaca 115 |||||||||| ||||||||||||| ||||| ||||||||||||| Sbjct: 141482 tggtggagaatttcatggaccctgctcacgttccctacgcgcaca 141438 Score = 48.1 bits (24), Expect = 0.028 Identities = 48/56 (85%) Strand = Plus / Minus Query: 8 tcgacgacccctccttcgtcaccgtctacggcgtcagggacctcccctacgggtac 63 |||| ||||| |||||| ||| |||| |||||||||||||||| |||||||||| Sbjct: 151931 tcgatgacccgtccttcaacacagtcttcggcgtcagggacctcttctacgggtac 151876 Score = 40.1 bits (20), Expect = 6.8 Identities = 46/52 (88%), Gaps = 2/52 (3%) Strand = Plus / Minus Query: 355 gtgttcatgtgcgtcccggtgtctccggggaaga-gcagggtgatctgggcg 405 |||||| | ||| ||||||||||||| ||||||| ||||||| ||||||||| Sbjct: 140974 gtgttcttctgcatcccggtgtctcc-gggaagatgcagggtcatctgggcg 140924
>ref|XM_470015.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1566 Score = 65.9 bits (33), Expect = 1e-07 Identities = 93/113 (82%) Strand = Plus / Plus Query: 3 ggagatcgacgacccctccttcgtcaccgtctacggcgtcagggacctcccctacgggta 62 |||| |||||||||| || | ||||| | || ||||||||| |||||| ||||| || Sbjct: 645 ggagctcgacgacccgtcgtccgtcatcaactccggcgtcagagacctcttatacggata 704 Query: 63 cgatgtgctggtggagaacctcatggaccctgcacacgtcccctacgcgcaca 115 ||| || |||||||||| ||||||||||||| ||||| ||||||||||||| Sbjct: 705 cgagttgttggtggagaatttcatggaccctgctcacgttccctacgcgcaca 757 Score = 40.1 bits (20), Expect = 6.8 Identities = 46/52 (88%), Gaps = 2/52 (3%) Strand = Plus / Plus Query: 355 gtgttcatgtgcgtcccggtgtctccggggaaga-gcagggtgatctgggcg 405 |||||| | ||| ||||||||||||| ||||||| ||||||| ||||||||| Sbjct: 961 gtgttcttctgcatcccggtgtctcc-gggaagatgcagggtcatctgggcg 1011
>gb|AY023751.1| Oryza sativa microsatellite MRG6076 containing (ACAT)X17, closest to marker R707, genomic sequence Length = 268 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 71 tggtggagaacctcatggaccctgcacacgtcccctacgcgcaca 115 |||||||||| ||||||||||||| ||||| ||||||||||||| Sbjct: 53 tggtggagaatttcatggaccctgctcacgttccctacgcgcaca 9
>ref|NM_118697.2| Arabidopsis thaliana electron carrier/ oxidoreductase AT4G25650 transcript variant AT4G25650.1 mRNA, complete cds Length = 1771 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 55 tacgggtacgatgtgctggtggagaacctcatggaccc 92 |||||||||||||| ||||||| |||||||||||||| Sbjct: 744 tacgggtacgatgtcttggtggaaaacctcatggaccc 781
>ref|NM_179113.1| Arabidopsis thaliana electron carrier/ oxidoreductase AT4G25650 transcript variant AT4G25650.2 mRNA, complete cds Length = 1840 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 55 tacgggtacgatgtgctggtggagaacctcatggaccc 92 |||||||||||||| ||||||| |||||||||||||| Sbjct: 744 tacgggtacgatgtcttggtggaaaacctcatggaccc 781
>gb|AY344062.1| Arabidopsis thaliana LLS1-like protein mRNA, complete cds Length = 1611 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 55 tacgggtacgatgtgctggtggagaacctcatggaccc 92 |||||||||||||| ||||||| |||||||||||||| Sbjct: 700 tacgggtacgatgtcttggtggaaaacctcatggaccc 737
>gb|AY056168.1| Arabidopsis thaliana unknown protein (At4g25650) mRNA, complete cds Length = 1784 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 55 tacgggtacgatgtgctggtggagaacctcatggaccc 92 |||||||||||||| ||||||| |||||||||||||| Sbjct: 736 tacgggtacgatgtcttggtggaaaacctcatggaccc 773
>gb|AY062731.1| Arabidopsis thaliana Unknown protein mRNA, complete cds Length = 1837 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 55 tacgggtacgatgtgctggtggagaacctcatggaccc 92 |||||||||||||| ||||||| |||||||||||||| Sbjct: 744 tacgggtacgatgtcttggtggaaaacctcatggaccc 781
>gb|AF424575.1|AF424575 Arabidopsis thaliana AT4g25650/L73G19_30 mRNA, complete cds Length = 1721 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 55 tacgggtacgatgtgctggtggagaacctcatggaccc 92 |||||||||||||| ||||||| |||||||||||||| Sbjct: 713 tacgggtacgatgtcttggtggaaaacctcatggaccc 750
>emb|BX826700.1|CNS0A413 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB56ZC05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1679 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 55 tacgggtacgatgtgctggtggagaacctcatggaccc 92 |||||||||||||| ||||||| |||||||||||||| Sbjct: 710 tacgggtacgatgtcttggtggaaaacctcatggaccc 747
>emb|BX826697.1|CNS0A40E Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB56ZB05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1679 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 55 tacgggtacgatgtgctggtggagaacctcatggaccc 92 |||||||||||||| ||||||| |||||||||||||| Sbjct: 709 tacgggtacgatgtcttggtggaaaacctcatggaccc 746
>emb|BX828488.1|CNS0A3T8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH95ZB06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1762 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 55 tacgggtacgatgtgctggtggagaacctcatggaccc 92 |||||||||||||| ||||||| |||||||||||||| Sbjct: 709 tacgggtacgatgtcttggtggaaaacctcatggaccc 746
>emb|BX827418.1|CNS0A3OG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS52ZB04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1732 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 55 tacgggtacgatgtgctggtggagaacctcatggaccc 92 |||||||||||||| ||||||| |||||||||||||| Sbjct: 715 tacgggtacgatgtcttggtggaaaacctcatggaccc 752
>gb|BT002586.1| Arabidopsis thaliana Unknown protein (At4g25650) mRNA, complete cds Length = 1744 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 55 tacgggtacgatgtgctggtggagaacctcatggaccc 92 |||||||||||||| ||||||| |||||||||||||| Sbjct: 700 tacgggtacgatgtcttggtggaaaacctcatggaccc 737
>gb|AC163355.2| Mus musculus BAC clone RP23-11P15 from chromosome 16, complete sequence Length = 225547 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 372 ggtgtctccggggaagagcagggtga 397 |||||||||| ||||||||||||||| Sbjct: 112924 ggtgtctccgaggaagagcagggtga 112899
>emb|AL161563.2|ATCHRIV63 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 63 Length = 198777 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Minus Query: 59 ggtacgatgtgctggtggagaacctcatggaccc 92 |||||||||| ||||||| |||||||||||||| Sbjct: 164485 ggtacgatgtcttggtggaaaacctcatggaccc 164452
>emb|AL050400.1|ATL73G19 Arabidopsis thaliana DNA chromosome 4, cosmid clone L73G19 (ESSA project) Length = 42446 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Minus Query: 59 ggtacgatgtgctggtggagaacctcatggaccc 92 |||||||||| ||||||| |||||||||||||| Sbjct: 12978 ggtacgatgtcttggtggaaaacctcatggaccc 12945
>emb|BX827110.1|CNS0A407 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB9ZB10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1377 Score = 44.1 bits (22), Expect = 0.43 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Plus Query: 55 tacgggtacgatgtgctggtggagaacctcatggaccc 92 |||||||||||||| ||||||| |||||||||||||| Sbjct: 715 tacgggtacgatgtcttggtgga-aacctcatggaccc 751
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 2 cggagatcgacgacccctccttcgtcacc 30 |||||||||||||| |||||||| ||||| Sbjct: 153703 cggagatcgacgacacctccttcctcacc 153675
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 415 aacatcggcgtctggctcgacaaggtcat 443 ||||||||||| |||||||||||| |||| Sbjct: 1641026 aacatcggcgtgtggctcgacaagttcat 1641054
>ref|XM_781250.1| PREDICTED: Strongylocentrotus purpuratus similar to dehydrogenase E1 and transketolase domain containing protein 1 (LOC581237), partial mRNA Length = 2238 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 gagatcgacgacccctccttc 24 ||||||||||||||||||||| Sbjct: 805 gagatcgacgacccctccttc 825
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 cgatgtgctggtggagaacct 83 ||||||||||||||||||||| Sbjct: 3018247 cgatgtgctggtggagaacct 3018227
>gb|AC154215.1| Mus musculus BAC clone RP24-134E18 from 13, complete sequence Length = 171014 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 141 gaaggaagacccaggaagagt 161 ||||||||||||||||||||| Sbjct: 32647 gaaggaagacccaggaagagt 32627
>ref|XM_470018.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1578 Score = 40.1 bits (20), Expect = 6.8 Identities = 46/52 (88%), Gaps = 2/52 (3%) Strand = Plus / Plus Query: 355 gtgttcatgtgcgtcccggtgtctccggggaaga-gcagggtgatctgggcg 405 |||||| | ||| ||||||||||||| ||||||| ||||||| ||||||||| Sbjct: 973 gtgttcttctgcatcccggtgtctcc-gggaagatgcagggtcatctgggcg 1023
>gb|AC159425.1| Trypanosoma brucei chromosome 3 clone RPCI93-27F10, complete sequence Length = 135196 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 aagaaggaagacccaggaag 158 |||||||||||||||||||| Sbjct: 120099 aagaaggaagacccaggaag 120080
>gb|AE008517.1| Streptococcus pneumoniae R6 section 133 of 184 of the complete genome Length = 10382 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 aagcttcgcaagaaggaagaccca 153 |||||||||||||||| ||||||| Sbjct: 1202 aagcttcgcaagaaggcagaccca 1225
>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence Length = 1653225 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 aagaaggaagacccaggaag 158 |||||||||||||||||||| Sbjct: 164778 aagaaggaagacccaggaag 164797
>ref|XM_869345.1| PREDICTED: Bos taurus similar to Membrane-associated RING finger protein 4 (Membrane-associated RING-CH protein IV) (MARCH-IV) (LOC617145), mRNA Length = 1635 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 gcgtcccggtgtctccgggg 384 |||||||||||||||||||| Sbjct: 746 gcgtcccggtgtctccgggg 727
>ref|XM_819044.1| Trypanosoma brucei TREU927 clone RPCI93-27F10 hypothetical protein (Tb927.3.670) partial mRNA Length = 1449 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 aagaaggaagacccaggaag 158 |||||||||||||||||||| Sbjct: 371 aagaaggaagacccaggaag 352
>ref|XM_389543.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09367.1) partial mRNA Length = 1656 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 cggcgtctggctcgacaagg 439 |||||||||||||||||||| Sbjct: 282 cggcgtctggctcgacaagg 301
>gb|AC148239.7| Medicago truncatula clone mth2-5d7, complete sequence Length = 103609 Score = 40.1 bits (20), Expect = 6.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 59 ggtacgatgtgctggtggagaacctcatggaccctgcaca 98 ||||||| || ||||| || ||||||||||||||| |||| Sbjct: 72089 ggtacgaggtactggttgaaaacctcatggacccttcaca 72128
>ref|XM_574384.1| PREDICTED: Rattus norvegicus similar to Zfp93 protein (LOC499093), mRNA Length = 2538 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 acgatgtgctggtggagaacctca 85 |||||||| ||||||||||||||| Sbjct: 389 acgatgtgatggtggagaacctca 412
>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome Length = 2160842 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 aagcttcgcaagaaggaagaccca 153 |||||||||||||||| ||||||| Sbjct: 1539908 aagcttcgcaagaaggcagaccca 1539931
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 gcgttcccgaggaacatcggcgtc 426 ||||||||||||||| |||||||| Sbjct: 1014154 gcgttcccgaggaacgtcggcgtc 1014177 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,576,586 Number of Sequences: 3902068 Number of extensions: 2576586 Number of successful extensions: 53043 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 52700 Number of HSP's gapped (non-prelim): 344 length of query: 500 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 478 effective length of database: 17,147,199,772 effective search space: 8196361491016 effective search space used: 8196361491016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
