ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal19j09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK100759.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119B10, full insert sequence Length = 1847 Score = 208 bits (105), Expect = 1e-50 Identities = 177/201 (88%) Strand = Plus / Plus Query: 44 gaggaaggggaagtcgtgcaagggctgcctgtactactcgtcggtgctcaaatcccgggg 103 ||||| |||||| || |||||||||||||| ||||||||||| |||||| |||||| || Sbjct: 110 gaggagggggaaatcctgcaagggctgcctctactactcgtccatgctcagatcccgcgg 169 Query: 104 atacaaccccatctgcgtggggatccctcgctccatcccccaagtcccgggcttcgtggt 163 || ||||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct: 170 attcaaccccgtctgcgtggggatcccgcgctccatcccccaagtcccaagctacgtggt 229 Query: 164 ggaagagcctagggaggaggtcgcggcgcaggggcatgatctgagacagttcaaatacgc 223 ||| ||||| || || |||| |||||||||||||||||| |||| |||||||| ||||| Sbjct: 230 ggacgagcccagagaagaggcggcggcgcaggggcatgatttgaggcagttcaagtacgc 289 Query: 224 ctgcgccggttactccatgtt 244 |||||| |||||||||||||| Sbjct: 290 ctgcgctggttactccatgtt 310
>dbj|AK058211.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-C06, full insert sequence Length = 930 Score = 208 bits (105), Expect = 1e-50 Identities = 177/201 (88%) Strand = Plus / Plus Query: 44 gaggaaggggaagtcgtgcaagggctgcctgtactactcgtcggtgctcaaatcccgggg 103 ||||| |||||| || |||||||||||||| ||||||||||| |||||| |||||| || Sbjct: 100 gaggagggggaaatcctgcaagggctgcctctactactcgtccatgctcagatcccgcgg 159 Query: 104 atacaaccccatctgcgtggggatccctcgctccatcccccaagtcccgggcttcgtggt 163 || ||||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct: 160 attcaaccccgtctgcgtggggatcccgcgctccatcccccaagtcccaagctacgtggt 219 Query: 164 ggaagagcctagggaggaggtcgcggcgcaggggcatgatctgagacagttcaaatacgc 223 ||| ||||| || || |||| |||||||||||||||||| |||| |||||||| ||||| Sbjct: 220 ggacgagcccagagaagaggcggcggcgcaggggcatgatttgaggcagttcaagtacgc 279 Query: 224 ctgcgccggttactccatgtt 244 |||||| |||||||||||||| Sbjct: 280 ctgcgctggttactccatgtt 300
>gb|AY105032.1| Zea mays PCO143982 mRNA sequence Length = 1025 Score = 172 bits (87), Expect = 6e-40 Identities = 177/207 (85%) Strand = Plus / Plus Query: 46 ggaaggggaagtcgtgcaagggctgcctgtactactcgtcggtgctcaaatcccggggat 105 ||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||| || | Sbjct: 147 ggaaggggaagtcatgcaagggctgcctctactactcgtcagtgctcaagtcccgcggtt 206 Query: 106 acaaccccatctgcgtggggatccctcgctccatcccccaagtcccgggcttcgtggtgg 165 ||||||| |||||||| |||||||| ||||||||||||||||| || || |||||||| Sbjct: 207 acaacccaatctgcgttgggatcccccgctccatcccccaagttcctaactacgtggtgg 266 Query: 166 aagagcctagggaggaggtcgcggcgcaggggcatgatctgagacagttcaaatacgcct 225 | || |||| |||||||| |||||||||||||||| || || | ||||| |||| | Sbjct: 267 atgaacctaaggaggaggcgacggcgcaggggcatgacctcaggcggttcaggtacgggt 326 Query: 226 gcgccggttactccatgttcgtcgaca 252 |||| ||||||||||||||||| |||| Sbjct: 327 gcgcgggttactccatgttcgtggaca 353
>gb|BT017717.1| Zea mays clone EL01N0447A02.c mRNA sequence Length = 895 Score = 165 bits (83), Expect = 2e-37 Identities = 176/207 (85%) Strand = Plus / Plus Query: 46 ggaaggggaagtcgtgcaagggctgcctgtactactcgtcggtgctcaaatcccggggat 105 ||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||| || Sbjct: 117 ggaaggggaagtcatgcaagggctgcctctactactcgtcagtgctcaattcccgcggtg 176 Query: 106 acaaccccatctgcgtggggatccctcgctccatcccccaagtcccgggcttcgtggtgg 165 ||||||| |||||||| |||||||| ||||||||||||||||| || || |||||||| Sbjct: 177 acaacccaatctgcgttgggatcccccgctccatcccccaagttcctaactacgtggtgg 236 Query: 166 aagagcctagggaggaggtcgcggcgcaggggcatgatctgagacagttcaaatacgcct 225 | || |||| |||||||| |||||||||||||||| || || | ||||| |||| | Sbjct: 237 atgaacctaaggaggaggcgacggcgcaggggcatgacctcaggcggttcaggtacgggt 296 Query: 226 gcgccggttactccatgttcgtcgaca 252 |||| ||||||||||||||||| |||| Sbjct: 297 gcgcgggttactccatgttcgtggaca 323
>gb|BT017618.1| Zea mays clone EL01N0434H04.c mRNA sequence Length = 995 Score = 155 bits (78), Expect = 2e-34 Identities = 171/202 (84%) Strand = Plus / Plus Query: 46 ggaaggggaagtcgtgcaagggctgcctgtactactcgtcggtgctcaaatcccggggat 105 |||||||||||||||||||||||||||| || |||||||| |||||||| ||||| || | Sbjct: 140 ggaaggggaagtcgtgcaagggctgcctttagtactcgtcagtgctcaagtcccgcggct 199 Query: 106 acaaccccatctgcgtggggatccctcgctccatcccccaagtcccgggcttcgtggtgg 165 ||||||| |||||||| |||||||| || |||||||||||||| || || |||||||| Sbjct: 200 acaacccaatctgcgttgggatcccccgttccatcccccaagttcctaactacgtggtgg 259 Query: 166 aagagcctagggaggaggtcgcggcgcaggggcatgatctgagacagttcaaatacgcct 225 | ||||||| |||||| | | ||||||||||||||||| || | ||||| |||| | Sbjct: 260 atgagcctaaggaggacgcgacagcgcaggggcatgatctcaggcggttcaggtacgggt 319 Query: 226 gcgccggttactccatgttcgt 247 |||| ||||||||||| ||||| Sbjct: 320 gcgcgggttactccatattcgt 341
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 119 bits (60), Expect = 8e-24 Identities = 93/104 (89%) Strand = Plus / Plus Query: 44 gaggaaggggaagtcgtgcaagggctgcctgtactactcgtcggtgctcaaatcccgggg 103 ||||| |||||| || |||||||||||||| ||||||||||| |||||| |||||| || Sbjct: 20486255 gaggagggggaaatcctgcaagggctgcctctactactcgtccatgctcagatcccgcgg 20486314 Query: 104 atacaaccccatctgcgtggggatccctcgctccatcccccaag 147 || ||||||| |||||||||||||||| |||||||||||||||| Sbjct: 20486315 attcaaccccgtctgcgtggggatcccgcgctccatcccccaag 20486358 Score = 93.7 bits (47), Expect = 5e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 158 cgtggtggaagagcctagggaggaggtcgcggcgcaggggcatgatctgagacagttcaa 217 ||||||||| ||||| || || |||| |||||||||||||||||| |||| |||||||| Sbjct: 20486555 cgtggtggacgagcccagagaagaggcggcggcgcaggggcatgatttgaggcagttcaa 20486614 Query: 218 atacgcctgcgccggttactccatgtt 244 ||||||||||| |||||||||||||| Sbjct: 20486615 gtacgcctgcgctggttactccatgtt 20486641
>dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1254_E07 Length = 124028 Score = 119 bits (60), Expect = 8e-24 Identities = 93/104 (89%) Strand = Plus / Plus Query: 44 gaggaaggggaagtcgtgcaagggctgcctgtactactcgtcggtgctcaaatcccgggg 103 ||||| |||||| || |||||||||||||| ||||||||||| |||||| |||||| || Sbjct: 3902 gaggagggggaaatcctgcaagggctgcctctactactcgtccatgctcagatcccgcgg 3961 Query: 104 atacaaccccatctgcgtggggatccctcgctccatcccccaag 147 || ||||||| |||||||||||||||| |||||||||||||||| Sbjct: 3962 attcaaccccgtctgcgtggggatcccgcgctccatcccccaag 4005 Score = 93.7 bits (47), Expect = 5e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 158 cgtggtggaagagcctagggaggaggtcgcggcgcaggggcatgatctgagacagttcaa 217 ||||||||| ||||| || || |||| |||||||||||||||||| |||| |||||||| Sbjct: 4202 cgtggtggacgagcccagagaagaggcggcggcgcaggggcatgatttgaggcagttcaa 4261 Query: 218 atacgcctgcgccggttactccatgtt 244 ||||||||||| |||||||||||||| Sbjct: 4262 gtacgcctgcgctggttactccatgtt 4288
>dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1531_B07 Length = 115245 Score = 119 bits (60), Expect = 8e-24 Identities = 93/104 (89%) Strand = Plus / Plus Query: 44 gaggaaggggaagtcgtgcaagggctgcctgtactactcgtcggtgctcaaatcccgggg 103 ||||| |||||| || |||||||||||||| ||||||||||| |||||| |||||| || Sbjct: 114394 gaggagggggaaatcctgcaagggctgcctctactactcgtccatgctcagatcccgcgg 114453 Query: 104 atacaaccccatctgcgtggggatccctcgctccatcccccaag 147 || ||||||| |||||||||||||||| |||||||||||||||| Sbjct: 114454 attcaaccccgtctgcgtggggatcccgcgctccatcccccaag 114497 Score = 93.7 bits (47), Expect = 5e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 158 cgtggtggaagagcctagggaggaggtcgcggcgcaggggcatgatctgagacagttcaa 217 ||||||||| ||||| || || |||| |||||||||||||||||| |||| |||||||| Sbjct: 114694 cgtggtggacgagcccagagaagaggcggcggcgcaggggcatgatttgaggcagttcaa 114753 Query: 218 atacgcctgcgccggttactccatgtt 244 ||||||||||| |||||||||||||| Sbjct: 114754 gtacgcctgcgctggttactccatgtt 114780
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.025 Identities = 36/40 (90%) Strand = Plus / Minus Query: 47 gaaggggaagtcgtgcaagggctgcctgtactactcgtcg 86 |||||||||||| |||||||||| ||| | |||||||||| Sbjct: 29756676 gaaggggaagtcctgcaagggctacctcttctactcgtcg 29756637
>dbj|AP004678.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1136_F03 Length = 110783 Score = 48.1 bits (24), Expect = 0.025 Identities = 36/40 (90%) Strand = Plus / Minus Query: 47 gaaggggaagtcgtgcaagggctgcctgtactactcgtcg 86 |||||||||||| |||||||||| ||| | |||||||||| Sbjct: 54806 gaaggggaagtcctgcaagggctacctcttctactcgtcg 54767
>gb|AE006198.1| Pasteurella multocida subsp. multocida str. Pm70 section 165 of 204 of the complete genome Length = 12956 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 211 agttcaaatacgcctgcgccggt 233 ||||||||||||||||||||||| Sbjct: 9613 agttcaaatacgcctgcgccggt 9635
>gb|AF040570.3| Amycolatopsis mediterranei rifamycin biosynthetic gene cluster Length = 109528 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 415 gcgccgggctggtcgcgtccg 435 ||||||||||||||||||||| Sbjct: 58742 gcgccgggctggtcgcgtccg 58762
>emb|AJ223012.1|AMM223012 Amycolatopsis mediterranei genes encoding rifamycin polyketide synthases, ORFs 1 to 5 Length = 53784 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 415 gcgccgggctggtcgcgtccg 435 ||||||||||||||||||||| Sbjct: 42337 gcgccgggctggtcgcgtccg 42357
>gb|AY893878.1| Synthetic construct Homo sapiens clone FLH127889.01L flap structure-specific endonuclease 1 (FEN1) mRNA, complete cds Length = 1449 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 346 cccagcctcaggagcaaggac 366 ||||||||||||||||||||| Sbjct: 1289 cccagcctcaggagcaaggac 1309
>gb|AY893430.1| Synthetic construct Homo sapiens clone FLH127799.01X flap structure-specific endonuclease 1 (FEN1) mRNA, complete cds Length = 1449 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 346 cccagcctcaggagcaaggac 366 ||||||||||||||||||||| Sbjct: 1289 cccagcctcaggagcaaggac 1309
>gb|AC004228.2|AC004228 Homo sapiens Chromosome 11q12.2 PAC clone pDJ519o13 containing human gene for ferritin heavy chain (FTH), complete sequence Length = 196080 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 346 cccagcctcaggagcaaggac 366 ||||||||||||||||||||| Sbjct: 9329 cccagcctcaggagcaaggac 9349
>dbj|AP002380.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-467L20, complete sequence Length = 188788 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 346 cccagcctcaggagcaaggac 366 ||||||||||||||||||||| Sbjct: 101131 cccagcctcaggagcaaggac 101151
>gb|AC004770.1|AC004770 Homo sapiens chromosome 11, BAC CIT-HSP-311e8 (BC269730) containing the hFEN1 gene, complete sequence Length = 185035 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 346 cccagcctcaggagcaaggac 366 ||||||||||||||||||||| Sbjct: 100192 cccagcctcaggagcaaggac 100172
>gb|U73629.1|HSU73629 Human chromosome 11 114g8 cosmid, complete sequence Length = 39563 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 346 cccagcctcaggagcaaggac 366 ||||||||||||||||||||| Sbjct: 19858 cccagcctcaggagcaaggac 19878
>ref|XM_369574.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG05890.4) partial mRNA Length = 3141 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 ggaggaggtcgcggcgcagg 195 |||||||||||||||||||| Sbjct: 1072 ggaggaggtcgcggcgcagg 1053
>dbj|AK202064.1| Mus musculus cDNA, clone:Y1G0140E10, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000053811, based on BLAT search Length = 399 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 347 ccagcctcaggagcaaggacagcgacca 374 ||||||||||||| ||||||||||||| Sbjct: 10 ccagcctcaggagttaggacagcgacca 37
>dbj|AP004371.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-535N6, complete sequence Length = 180721 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 160 tggtggaagagcctagggaggagg 183 ||||||||||||||||| |||||| Sbjct: 153238 tggtggaagagcctaggaaggagg 153215 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,689,485 Number of Sequences: 3902068 Number of extensions: 2689485 Number of successful extensions: 46217 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46158 Number of HSP's gapped (non-prelim): 58 length of query: 461 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 439 effective length of database: 17,147,199,772 effective search space: 7527620699908 effective search space used: 7527620699908 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
