ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal19j06 |
|---|---|
| Clone Library Name | barley_pub |
>DNAJ_RHOBA (Q7UM96) Chaperone protein dnaJ| Length = 391 Score = 33.9 bits (76), Expect = 0.41 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 7/48 (14%) Frame = +1 Query: 1 EIQGAYSVLSDANKRFLYD-------VGVYQEEEDSDDSMQGMGDFLG 123 E AY VLSDANKR YD G Q+ D +D + GD G Sbjct: 50 EATEAYEVLSDANKRARYDQYGHAGVEGATQQYGDVEDIFEAFGDLFG 97
>DNAJ_THET2 (Q72GN6) Chaperone protein dnaJ| Length = 350 Score = 33.5 bits (75), Expect = 0.54 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 5/69 (7%) Frame = +1 Query: 1 EIQGAYSVLSDANKRFLYDVGVYQEEEDSDDSMQGMGDFLGEMAHMMSQTRPARQESFE- 177 EI AY+VLSD KR YD G + E + + + F E+ + RP R E E Sbjct: 47 EINEAYAVLSDPKKRAAYDRGHLEAPEYRPEDLFDL--FFQEVFGVRGHRRPPRGEDLEA 104 Query: 178 ----ELQQL 192 ELQ L Sbjct: 105 EVEVELQDL 113
>DNAJ1_THET8 (Q5SLW9) Chaperone protein dnaJ 1| Length = 350 Score = 33.5 bits (75), Expect = 0.54 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 5/69 (7%) Frame = +1 Query: 1 EIQGAYSVLSDANKRFLYDVGVYQEEEDSDDSMQGMGDFLGEMAHMMSQTRPARQESFE- 177 EI AY+VLSD KR YD G + E + + + F E+ + RP R E E Sbjct: 47 EINEAYAVLSDPKKRAAYDRGHLEAPEYRPEDLFDL--FFQEVFGVRGHRRPPRGEDLEA 104 Query: 178 ----ELQQL 192 ELQ L Sbjct: 105 EVEVELQDL 113
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 33.1 bits (74), Expect = 0.70 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = +2 Query: 419 KRVRVTASLSFVLGRVMPSKRQGREAGTPAGDETG 523 ++V++ F LG++M +G AG PAGDETG Sbjct: 212 RKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETG 246
>FRIZ2_DROME (Q9VVX3) Protein frizzled-2 precursor (dFz2)| Length = 694 Score = 32.7 bits (73), Expect = 0.92 Identities = 22/68 (32%), Positives = 30/68 (44%) Frame = +1 Query: 343 EAASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRRRNG 522 EA S G S GSG + + G+G G S G+S + RG N+ +N Sbjct: 185 EAGSGGSSGGSGGSGSGSGSGGKRKQGGSGSGGSG-AGGSSGSTSTKPCRGRNSKNCQNP 243 Query: 523 QKQKLSSK 546 Q +K S K Sbjct: 244 QGEKASGK 251
>HORN_MOUSE (Q8VHD8) Hornerin| Length = 2496 Score = 32.7 bits (73), Expect = 0.92 Identities = 28/118 (23%), Positives = 43/118 (36%) Frame = +1 Query: 199 DMFQSDIDSGFCNGPAKGHHDPFQRQTQTFSTXXXXXXXXXXXLATEAEAASCNGINKRG 378 D Q +SGF N G P R+ F + +G K G Sbjct: 175 DYEQGQHESGFSNSSGNGR--PSSRKASGFPQPGSEQGQSSSSSTKGSGECYSSGNGKHG 232 Query: 379 SSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRRRNGQKQKLSSKHD 552 SS+ GS A +G+G+ + GT + R +TSR +G ++ S + Sbjct: 233 SSSGGS------AVSGSGHSNTYGKQGTGSRHSSSNRRSRSTSRESSGSQEYSSGSSE 284 Score = 30.0 bits (66), Expect = 6.0 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Frame = +1 Query: 334 TEAEAASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRAR--GGNTS 507 ++ + C + G + GSG + + G+ Y QS +GT ++ +P +R GG+ S Sbjct: 831 SQQHGSCCGQSSGYGQNEYGSGHSASSGQQGSHYSQSS-SYGTHNSGGSPSSRPAGGHGS 889 Query: 508 R--RRNGQKQKLSSKHDVSSEDEMLSPQ 585 R R +G Q S SS S Q Sbjct: 890 RSGRSSGLGQYGSPSGQTSSSTRQGSGQ 917
>DNJBB_MOUSE (Q99KV1) DnaJ homolog subfamily B member 11 precursor| Length = 358 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 4/72 (5%) Frame = +1 Query: 1 EIQGAYSVLSDANKRFLYDVGVYQEEEDSDDSMQGMGD----FLGEMAHMMSQTRPARQE 168 ++ AY VLSD+ KR YD Y EE D GD F G+ M T + Sbjct: 69 DLGAAYEVLSDSEKRKQYD--TYGEEGLKDGHQSSHGDIFSHFFGDFGFMFGGTPRQQDR 126 Query: 169 SFEELQQLFVDM 204 + + VD+ Sbjct: 127 NIPRGSDIIVDL 138
>DNJBB_HUMAN (Q9UBS4) DnaJ homolog subfamily B member 11 precursor| (ER-associated dnaJ protein 3) (ErJ3) (ER-associated Hsp40 co-chaperone) (hDj9) (PWP1-interacting protein 4) Length = 358 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 4/72 (5%) Frame = +1 Query: 1 EIQGAYSVLSDANKRFLYDVGVYQEEEDSDDSMQGMGD----FLGEMAHMMSQTRPARQE 168 ++ AY VLSD+ KR YD Y EE D GD F G+ M T + Sbjct: 69 DLGAAYEVLSDSEKRKQYD--TYGEEGLKDGHQSSHGDIFSHFFGDFGFMFGGTPRQQDR 126 Query: 169 SFEELQQLFVDM 204 + + VD+ Sbjct: 127 NIPRGSDIIVDL 138
>ZN335_HUMAN (Q9H4Z2) Zinc finger protein 335| Length = 1342 Score = 32.0 bits (71), Expect = 1.6 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Frame = +1 Query: 358 NGINKRGSSAMGSGKPPRAAEAGAGYGQSE-FCFGTSDAKQAPRARGGNTSRRRNGQKQK 534 N + +A G G+P +E+G G G SE +SDA AP + S + Sbjct: 4 NEVESSSDAAPGPGRPEEPSESGLGVGTSEAVSADSSDAAAAPGQAEADDSGVGQSSDRG 63 Query: 535 LSSKHDVSSEDEMLSP 582 S+ +VS P Sbjct: 64 SRSQEEVSESSSSADP 79
>VLPB_MYCHR (P29229) Variant surface antigen B precursor (VLPB prolipoprotein)| Length = 174 Score = 32.0 bits (71), Expect = 1.6 Identities = 20/69 (28%), Positives = 25/69 (36%) Frame = +1 Query: 346 AASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRRRNGQ 525 A SC N S GSG ++G G G G S R+ G++S GQ Sbjct: 27 AISCGQTNTDKSQQPGSGSSTSGGQSGTGLGSGTTTGGQSGTTTGGRSGSGSSSSTTGGQ 86 Query: 526 KQKLSSKHD 552 S D Sbjct: 87 TGTGSDSQD 95
>GAG_FOAMV (P14349) Gag polyprotein (Core polyprotein) [Contains: Protease (EC| 3.4.23.-)] Length = 811 Score = 32.0 bits (71), Expect = 1.6 Identities = 21/69 (30%), Positives = 29/69 (42%) Frame = +1 Query: 361 GINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRRRNGQKQKLS 540 G+N RG S S P G G GQ+ TS Q P G R +GQ + S Sbjct: 468 GLNARGQSIRASVTPQPRPSRGRGRGQN-----TSRPSQGPANSGRGRQRPASGQSNRGS 522 Query: 541 SKHDVSSED 567 S + + ++ Sbjct: 523 STQNQNQDN 531
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 31.6 bits (70), Expect = 2.0 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +2 Query: 419 KRVRVTASLSFVLGRVMPSKRQGREAGTPAGDETG 523 ++V++ F LG++M +G G PAGDETG Sbjct: 212 RKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETG 246
>DNAJ_BIFLO (Q8G6C6) Chaperone protein dnaJ| Length = 381 Score = 31.2 bits (69), Expect = 2.7 Identities = 17/41 (41%), Positives = 23/41 (56%) Frame = +1 Query: 1 EIQGAYSVLSDANKRFLYDVGVYQEEEDSDDSMQGMGDFLG 123 E+ AY VLS+ +KR +YD GV D ++ G G F G Sbjct: 45 EVNNAYDVLSNPDKRRMYDSGV-----DPNNPNAGAGGFSG 80
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 30.8 bits (68), Expect = 3.5 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = +2 Query: 419 KRVRVTASLSFVLGRVMPSKRQGREAGTPAGDETG 523 ++V++ F LG++M +G +G P+GDETG Sbjct: 212 RKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETG 246
>DNAJ_THETN (Q8RB67) Chaperone protein dnaJ| Length = 384 Score = 30.8 bits (68), Expect = 3.5 Identities = 16/39 (41%), Positives = 18/39 (46%) Frame = +1 Query: 1 EIQGAYSVLSDANKRFLYDVGVYQEEEDSDDSMQGMGDF 117 EI AY +LSD KR YD + E G GDF Sbjct: 49 EINEAYEILSDPQKRAQYDQFGHAAFEQGGSQQGGFGDF 87
>DNAJ_THEMA (Q9WZV3) Chaperone protein dnaJ| Length = 369 Score = 30.8 bits (68), Expect = 3.5 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = +1 Query: 1 EIQGAYSVLSDANKRFLYDVGVYQEEEDSDDSMQGMGDF 117 EIQ AY VLSD KR +YD Y E+ + + G F Sbjct: 52 EIQEAYEVLSDPQKRAMYDRFGYVGEQPTYQETESGGFF 90
>HORN_HUMAN (Q86YZ3) Hornerin| Length = 2850 Score = 30.4 bits (67), Expect = 4.6 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 6/109 (5%) Frame = +1 Query: 235 NGPAKGHHDPFQRQT----QTFSTXXXXXXXXXXXLATEAEAASCNGINKRGSSAMGSGK 402 +G A GH R Q+ S+ + E+AS + + RG GSG+ Sbjct: 831 HGSASGHFSSQGRHGSTSGQSSSSGQHDSSSGQSSSYGQHESASHHA-SGRGRHGSGSGQ 889 Query: 403 PPRAAEAGAGYGQSEFC--FGTSDAKQAPRARGGNTSRRRNGQKQKLSS 543 P + G+G GQS G+ + + R G+ S + +G K SS Sbjct: 890 SPGHGQRGSGSGQSPSYGRHGSGSGRSSSSGRHGSGSGQSSGFGHKSSS 938
>DNAJ_IDILO (Q5QXL2) Chaperone protein dnaJ| Length = 384 Score = 30.0 bits (66), Expect = 6.0 Identities = 44/172 (25%), Positives = 59/172 (34%), Gaps = 4/172 (2%) Frame = +1 Query: 1 EIQGAYSVLSDANKRFLYDVGVYQ--EEEDSDDSMQGMGDFLGEMAHMMSQTRPARQESF 174 EI+ AY VLSD KR +YD ++ E+ + G G F G A Sbjct: 49 EIKQAYEVLSDPQKRQMYDQYGHEAFEQARQGGAGHGAGGFGGGGA-------------- 94 Query: 175 EELQQLFVDMFQSDIDSGFCNGPAKGHHDPFQRQTQTFS-TXXXXXXXXXXXLATEAEAA 351 + +F D+F DI G A+ R S + T E Sbjct: 95 -DFADIFGDVF-GDIFGGGRRQQARAQRGADLRYNLDMSLEEAVRGKTVELEIPTLVECR 152 Query: 352 SCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQ-APRARGGNT 504 CNG S G P+ G GQ + G +Q P+ RG T Sbjct: 153 DCNG------SGAKKGSKPQTCGHCHGSGQIQMRQGFFAVQQTCPQCRGTGT 198
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 30.0 bits (66), Expect = 6.0 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +2 Query: 419 KRVRVTASLSFVLGRVMPSKRQGREAGTPAGDETG 523 ++V++ F LG++M +G AG P+GDE G Sbjct: 212 RKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAG 246
>DNJC7_MOUSE (Q9QYI3) DnaJ homolog subfamily C member 7 (Tetratricopeptide| repeat protein 2) (TPR repeat protein 2) (MDj11) Length = 494 Score = 30.0 bits (66), Expect = 6.0 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +1 Query: 1 EIQGAYSVLSDANKRFLYDVGVYQEEEDSDDSMQGMGDF 117 E+ A+++LSD K+ YD G +D D+ MGDF Sbjct: 430 EVGEAFTILSDPKKKTRYDSG-----QDLDEEGMNMGDF 463
>DNJC7_HUMAN (Q99615) DnaJ homolog subfamily C member 7 (Tetratricopeptide| repeat protein 2) (TPR repeat protein 2) Length = 494 Score = 30.0 bits (66), Expect = 6.0 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +1 Query: 1 EIQGAYSVLSDANKRFLYDVGVYQEEEDSDDSMQGMGDF 117 E+ A+++LSD K+ YD G +D D+ MGDF Sbjct: 430 EVGEAFTILSDPKKKTRYDSG-----QDLDEEGMNMGDF 463
>AMER1_MOUSE (Q9JHT5) AMME syndrome candidate gene 1 protein homolog| Length = 344 Score = 30.0 bits (66), Expect = 6.0 Identities = 17/55 (30%), Positives = 23/55 (41%) Frame = +1 Query: 346 AASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSR 510 AA C G+ K+ S+ PP + G G S C G S + GG +R Sbjct: 2 AAGCCGVKKQKLSS----SPPSGSGGGGGASSSSHCSGESQCRAGELGLGGAGTR 52
>AMER1_HUMAN (Q9Y4X0) AMME syndrome candidate gene 1 protein| Length = 333 Score = 30.0 bits (66), Expect = 6.0 Identities = 17/55 (30%), Positives = 23/55 (41%) Frame = +1 Query: 346 AASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSR 510 AA C G+ K+ S+ PP + G G S C G S + GG +R Sbjct: 2 AAGCCGVKKQKLSS----SPPSGSGGGGGASSSSHCSGESQCRAGELGLGGAGTR 52
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 29.6 bits (65), Expect = 7.8 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +2 Query: 419 KRVRVTASLSFVLGRVMPSKRQGREAGTPAGDETG 523 ++V++ F LG++M +G +G AGDETG Sbjct: 212 RKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETG 246
>DNAJ2_THET8 (Q56237) Chaperone protein dnaJ 2| Length = 280 Score = 29.6 bits (65), Expect = 7.8 Identities = 25/84 (29%), Positives = 32/84 (38%) Frame = +1 Query: 1 EIQGAYSVLSDANKRFLYDVGVYQEEEDSDDSMQGMGDFLGEMAHMMSQTRPARQESFEE 180 EI AY+VLSD KR +YD Y E G DF G E+ Sbjct: 49 EINEAYAVLSDPEKRRIYD--TYGTTEAPPPPPPGGYDFSG--------------FDVED 92 Query: 181 LQQLFVDMFQSDIDSGFCNGPAKG 252 + F ++F + GF KG Sbjct: 93 FSEFFQELFGPGLFGGFGRRSRKG 116
>RCC2_HUMAN (Q9P258) Protein RCC2 (Telophase disk protein of 60 kDa) (RCC1-like| protein TD-60) Length = 522 Score = 29.6 bits (65), Expect = 7.8 Identities = 20/55 (36%), Positives = 25/55 (45%) Frame = +1 Query: 406 PRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRRRNGQKQKLSSKHDVSSEDE 570 PR A A + E G A+ PR RGG R+R ++ SS SS DE Sbjct: 2 PRKKAAAAAW--EEPSSGNGTARAGPRKRGGPAGRKRERPERCSSSSGGGSSGDE 54
>BRO1_SCHPO (O13783) Vacuolar protein-sorting protein bro1 (BRO| domain-containing protein 1) Length = 775 Score = 29.6 bits (65), Expect = 7.8 Identities = 17/54 (31%), Positives = 30/54 (55%) Frame = +1 Query: 28 SDANKRFLYDVGVYQEEEDSDDSMQGMGDFLGEMAHMMSQTRPARQESFEELQQ 189 +D + + L D+ + QEE++ D +Q D L E+ + + P RQ + + LQQ Sbjct: 562 TDNSGQSLLDIPIEQEEQERDMKIQL--DLLEELQSRVQKLVPERQTTLQALQQ 613
>DNJA1_HUMAN (P31689) DnaJ homolog subfamily A member 1 (Heat shock 40 kDa| protein 4) (DnaJ protein homolog 2) (HSJ-2) (HSDJ) Length = 397 Score = 29.6 bits (65), Expect = 7.8 Identities = 14/21 (66%), Positives = 15/21 (71%) Frame = +1 Query: 1 EIQGAYSVLSDANKRFLYDVG 63 +I AY VLSDA KR LYD G Sbjct: 47 QISQAYEVLSDAKKRELYDKG 67
>CTCF_RAT (Q9R1D1) Transcriptional repressor CTCF (CCCTC-binding factor)| (CTCFL paralog) (11-zinc finger protein) Length = 737 Score = 29.6 bits (65), Expect = 7.8 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +1 Query: 493 GGNTSRRRNGQKQKLSSKHDVSSEDEMLSP 582 GG T + + G+K+K+ SK + SS+ E P Sbjct: 588 GGETKKSKRGRKRKMRSKKEDSSDSENAEP 617
>VE2_HPV04 (Q07849) Regulatory protein E2| Length = 402 Score = 29.6 bits (65), Expect = 7.8 Identities = 22/68 (32%), Positives = 29/68 (42%) Frame = +1 Query: 337 EAEAASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRRR 516 E E + G S GSG+ PR G G G E G++ +P G SR R Sbjct: 249 ETEGVRLRRRRREGKSGPGSGETPRKRRRGGGRGGGETELGSA---PSPAEVG---SRHR 302 Query: 517 NGQKQKLS 540 ++Q LS Sbjct: 303 QVERQGLS 310
>CTCF_HUMAN (P49711) Transcriptional repressor CTCF (CCCTC-binding factor)| (CTCFL paralog) (11-zinc finger protein) Length = 727 Score = 29.6 bits (65), Expect = 7.8 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +1 Query: 493 GGNTSRRRNGQKQKLSSKHDVSSEDEMLSP 582 GG T + + G+K+K+ SK + SS+ E P Sbjct: 588 GGETKKSKRGRKRKMRSKKEDSSDSENAEP 617 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.130 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,118,796 Number of Sequences: 219361 Number of extensions: 1444525 Number of successful extensions: 4188 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 4013 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4180 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
