Clone Name	baal19i21
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	989	0.0
2	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	902	0.0
3	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	783	0.0
4	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	668	0.0
5	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	416	e-113
6	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	396	e-107
7	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	343	4e-91
8	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	343	4e-91
9	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	343	4e-91
10	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	343	4e-91
11	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	343	4e-91
12	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	343	4e-91
13	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	335	9e-89
14	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	335	9e-89
15	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	293	3e-76
16	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	285	7e-74
17	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	208	1e-50
18	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	188	1e-44
19	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	188	1e-44
20	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	188	1e-44
21	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	188	1e-44
22	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	184	2e-43
23	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	168	1e-38
24	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	168	1e-38
25	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	168	1e-38
26	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	147	4e-32
27	gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph...	117	4e-23
28	gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precurso...	117	4e-23
29	ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	111	2e-21
30	ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	111	2e-21
31	ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	111	2e-21
32	gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890)...	111	2e-21
33	gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730...	111	2e-21
34	gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, comp...	111	2e-21
35	gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, compl...	111	2e-21
36	gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, compl...	111	2e-21
37	gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730...	111	2e-21
38	gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete se...	111	2e-21
39	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	103	6e-19
40	emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphospha...	101	2e-18
41	gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox...	98	4e-17
42	gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precur...	96	1e-16
43	gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA...	94	6e-16
44	emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase	94	6e-16
45	gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase m...	92	2e-15
46	gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence	88	3e-14
47	gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds	84	5e-13
48	gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carb...	82	2e-12
49	emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubis...	82	2e-12
50	gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec...	80	8e-12
51	gb|AY312575.1| Larrea tridentata Rubisco activase alpha form pre...	80	8e-12
52	gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1...	80	8e-12
53	gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map ...	78	3e-11
54	gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphospha...	78	3e-11
55	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	76	1e-10
56	gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosph...	74	5e-10
57	gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precur...	68	3e-08
58	gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/...	62	2e-06
59	gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete se...	56	1e-04
60	gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, c...	56	1e-04
61	gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ...	46	0.12
62	gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome	44	0.47
63	gb|AC098586.3| Homo sapiens BAC clone RP11-109F18 from 4, comple...	44	0.47
64	emb|Y10657.1|CLRCAGENE C.littorale rca gene	44	0.47
65	gb|AE015925.1| Chlamydophila caviae GPIC, complete genome	44	0.47
66	emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA	42	1.8
67	emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA	42	1.8
68	emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA	42	1.8
69	emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA	42	1.8
70	emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA	42	1.8
71	gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate car...	42	1.8
72	gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome	40	7.3
73	gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 ...	40	7.3
74	gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of t...	40	7.3
75	gb|CP000110.1| Synechococcus sp. CC9605, complete genome	40	7.3
76	ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867...	40	7.3
77	ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrot...	40	7.3
78	ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphop...	40	7.3
79	gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co...	40	7.3
80	gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence	40	7.3
81	gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome	40	7.3
82	ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-ass...	40	7.3
83	gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphopro...	40	7.3
84	ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain h...	40	7.3
85	gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite...	40	7.3
86	gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite...	40	7.3
87	ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical ...	40	7.3
88	gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphopro...	40	7.3
89	gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, com...	40	7.3
90	emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chr...	40	7.3
91	emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on ch...	40	7.3
92	gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and co...	40	7.3
93	gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, co...	40	7.3
94	emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta ...	40	7.3
95	dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE60023...	40	7.3
96	gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, comple...	40	7.3
97	gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-4...	40	7.3
98	gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, com...	40	7.3
99	gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, co...	40	7.3
100	gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome...	40	7.3
101	gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 ...	40	7.3
102	gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds	40	7.3
103	gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana...	40	7.3
104	dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome	40	7.3
105	gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I...	40	7.3
106	gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209....	40	7.3
107	emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chr...	40	7.3
108	gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana...	40	7.3
109	gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, comple...	40	7.3
110	gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Canc...	40	7.3
111	dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds	40	7.3
112	dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:R...	40	7.3
113	emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,...	40	7.3
114	gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge...	40	7.3
115	gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltrans...	40	7.3
116	gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila No...	40	7.3
117	emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein...	40	7.3

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  989 bits (499), Expect = 0.0
 Identities = 522/527 (99%), Gaps = 2/527 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  ccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatgg 72
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 87  ccagcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatgg 145

                                                                       
Query: 73  ctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcggga 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcggga 205

                                                                       
Query: 133 agaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggcca 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 agaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggcca 265

                                                                       
Query: 193 acaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtgga 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtgga 325

                                                                       
Query: 253 agggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcg 312
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agggtcttgctaccgatatctccgacgaccagcaggacatcaccagagggaagggcatcg 385

                                                                       
Query: 313 tggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcct 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcct 445

                                                                       
Query: 373 acgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttct 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 acgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttct 505

                                                                       
Query: 433 acatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccc 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccc 565

                                                          
Query: 493 tgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 566 tgcccaacatcaagatcccactcatc-ttgggtatctggggaggcaa 611

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  902 bits (455), Expect = 0.0
 Identities = 515/533 (96%), Gaps = 3/533 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   tgatnaccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacag 66
           |||| ||||||||||||||||  |||||||| ||||||||||||||| ||||||||||||
Sbjct: 2   tgatcaccagcacagccgcgc--atccaccgctgctagcaaggtcgagcaagcagcacag 59

                                                                       
Query: 67  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 126
           ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 60  agatggctgctgccttctcctccaccgtcggtgccccggcttctacgccgaccaacttcc 119

                                                                       
Query: 127 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 179

                                                                       
Query: 187 aggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgaca 246
           |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 180 aggccaacaggttcacggtcatggcagcggaaaacatcgacgagaagaggaacaccgaca 239

                                                                       
Query: 247 agtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 agtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagg 299

                                                                       
Query: 307 gcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctca 366
           ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 300 gcatcgtggactccctcttccaggcgcccactggcgacggcacccacgaggccgtcctca 359

                                                                       
Query: 367 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 426
           |||| |||||||||||||||||||| ||   |||||||||||||||||||||||||||||
Sbjct: 360 gctcatacgagtacgtcagccagggactcaagaagtacgacttcgacaacaccatgggag 419

                                                                       
Query: 427 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttca 486
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 420 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaagaacttca 479

                                                                
Query: 487 tgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 480 tgaccctgcccaacatcaagatcccactcatc-ttgggtatctggggaggcaa 531

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  783 bits (395), Expect = 0.0
 Identities = 401/403 (99%)
 Strand = Plus / Plus

                                                                        
Query: 104  ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577

                                                                        
Query: 164  gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5578 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 5637

                                                                        
Query: 224  cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5638 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 5697

                                                                        
Query: 284  gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacgggcga 343
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 5698 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggggca 5757

                                                                        
Query: 344  cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5758 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 5817

                                                                        
Query: 404  cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5818 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 5877

                                                       
Query: 464  tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 506
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5878 tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 5920



 Score =  285 bits (144), Expect = 7e-74
 Identities = 256/292 (87%), Gaps = 1/292 (0%)
 Strand = Plus / Plus

                                                                        
Query: 248  gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 307
            |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998

                                                                        
Query: 308  catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 367
            |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| ||
Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058

                                                                        
Query: 368  ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 427
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 3059 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 3118

                                                                        
Query: 428  cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 487
              | |||||||| || || ||||||||||||||  | ||||| ||| |||| ||||||||
Sbjct: 3119 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 3178

                                                                
Query: 488  gaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
            ||| || |||||||||||| | || ||||||  |||||||||||||||||||
Sbjct: 3179 gacactccccaacatcaaggttcctctcatc-ctgggtatctggggaggcaa 3229



 Score =  174 bits (88), Expect = 2e-40
 Identities = 97/99 (97%), Gaps = 1/99 (1%)
 Strand = Plus / Plus

                                                                        
Query: 7    tgatnaccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacag 66
            |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 5301 tgatcaccagcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacag 5359

                                                   
Query: 67   agatggctgctgccttctcctccaccgtcggggctccgg 105
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 5360 agatggctgctgccttctcctccaccgtcggggctccgg 5398



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 34/35 (97%), Gaps = 1/35 (2%)
 Strand = Plus / Plus

                                               
Query: 505  agatcccactcatctttgggtatctggggaggcaa 539
            |||||||||||||||| ||||||||||||||||||
Sbjct: 6070 agatcccactcatctt-gggtatctggggaggcaa 6103

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  668 bits (337), Expect = 0.0
 Identities = 353/357 (98%), Gaps = 1/357 (0%)
 Strand = Plus / Plus

                                                                       
Query: 183 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 60

                                                                       
Query: 243 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 302
           ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 61  gacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagaggg 120

                                                                       
Query: 303 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 180

                                                                       
Query: 363 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 240

                                                                       
Query: 423 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 300

                                                                    
Query: 483 ttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 301 ttcatgaccctgcccaacatcaagatcccactcatc-ttgggtatctggggaggcaa 356

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  416 bits (210), Expect = e-113
 Identities = 274/294 (93%), Gaps = 1/294 (0%)
 Strand = Plus / Plus

                                                                       
Query: 243 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 302
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316

                                                                       
Query: 303 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 362
           ||||| ||||| ||||| || ||||||||||||| |||||| ||||||||||||||||||
Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376

                                                                       
Query: 363 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 422
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 377 ctcagctcctacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 436

                                                                       
Query: 423 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 482
           ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| |||
Sbjct: 437 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 496

                                                                 
Query: 483 ttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggagg 536
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 497 ttcatgaccctgcccaacatcaagatcccactcatc-ttgggtatctggggagg 549



 Score =  228 bits (115), Expect = 1e-56
 Identities = 139/147 (94%)
 Strand = Plus / Plus

                                                                       
Query: 65  agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 124
           ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct: 76  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagctt 135

                                                                       
Query: 125 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 184
           |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 136 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 195

                                      
Query: 185 caaggccaacaggttcacagtcatggc 211
           |||||||||||||||||| ||||||||
Sbjct: 196 caaggccaacaggttcaccgtcatggc 222

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  396 bits (200), Expect = e-107
 Identities = 271/294 (92%), Gaps = 1/294 (0%)
 Strand = Plus / Plus

                                                                       
Query: 243 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 302
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306

                                                                       
Query: 303 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 362
           ||||| ||||| |||||  | ||||||||||||| |||||| || |||||||||||||||
Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366

                                                                       
Query: 363 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 422
           |||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 367 ctcagctcntacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 426

                                                                       
Query: 423 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 482
           ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| |||
Sbjct: 427 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 486

                                                                 
Query: 483 ttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggagg 536
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 487 ttcatgaccctgcccaacatcaagatcccactcatc-ttgggtatctggggagg 539



 Score =  222 bits (112), Expect = 9e-55
 Identities = 138/147 (93%)
 Strand = Plus / Plus

                                                                       
Query: 65  agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 124
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |||
Sbjct: 66  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagctt 125

                                                                       
Query: 125 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 184
           |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 126 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 185

                                      
Query: 185 caaggccaacaggttcacagtcatggc 211
           |||||||||||||||||| ||||||||
Sbjct: 186 caaggccaacaggttcaccgtcatggc 212

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for
           ribulose-bisphosphate carboxylase activase large isoform
           precursor protein, complete cds, clone: 13YPR038
          Length = 1558

 Score =  343 bits (173), Expect = 4e-91
 Identities = 267/297 (89%), Gaps = 1/297 (0%)
 Strand = Plus / Plus

                                                                       
Query: 243 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 302
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263

                                                                       
Query: 303 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 362
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323

                                                                       
Query: 363 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 422
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 324 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 383

                                                                       
Query: 423 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 482
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 384 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 443

                                                                    
Query: 483 ttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           ||||||||||| |||||||||||| |||||||||||  |||||||||||||||||||
Sbjct: 444 ttcatgaccctccccaacatcaaggtcccactcatc-ctgggtatctggggaggcaa 499



 Score =  172 bits (87), Expect = 8e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 67  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 126
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 25  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 84

                                                                       
Query: 127 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 186
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 85  tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 144

                          
Query: 187 aggccaacaggttca 201
           |   |||||||||||
Sbjct: 145 acatcaacaggttca 159

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
           insert sequence
          Length = 1680

 Score =  343 bits (173), Expect = 4e-91
 Identities = 267/297 (89%), Gaps = 1/297 (0%)
 Strand = Plus / Plus

                                                                       
Query: 243 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 302
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300

                                                                       
Query: 303 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 362
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360

                                                                       
Query: 363 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 422
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 361 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 420

                                                                       
Query: 423 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 482
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 421 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 480

                                                                    
Query: 483 ttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           ||||||||||| |||||||||||| |||||||||||  |||||||||||||||||||
Sbjct: 481 ttcatgaccctccccaacatcaaggtcccactcatc-ctgggtatctggggaggcaa 536



 Score =  172 bits (87), Expect = 8e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 67  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 126
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 62  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 121

                                                                       
Query: 127 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 186
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 122 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 181

                          
Query: 187 aggccaacaggttca 201
           |   |||||||||||
Sbjct: 182 acatcaacaggttca 196

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
           insert sequence
          Length = 1691

 Score =  343 bits (173), Expect = 4e-91
 Identities = 267/297 (89%), Gaps = 1/297 (0%)
 Strand = Plus / Plus

                                                                       
Query: 243 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 302
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                                                                       
Query: 303 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 362
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359

                                                                       
Query: 363 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 422
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 360 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 419

                                                                       
Query: 423 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 482
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 420 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 479

                                                                    
Query: 483 ttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           ||||||||||| |||||||||||| |||||||||||  |||||||||||||||||||
Sbjct: 480 ttcatgaccctccccaacatcaaggtcccactcatc-ctgggtatctggggaggcaa 535



 Score =  172 bits (87), Expect = 8e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 67  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 126
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                                                                       
Query: 127 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 186
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180

                          
Query: 187 aggccaacaggttca 201
           |   |||||||||||
Sbjct: 181 acatcaacaggttca 195

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
           insert sequence
          Length = 1470

 Score =  343 bits (173), Expect = 4e-91
 Identities = 267/297 (89%), Gaps = 1/297 (0%)
 Strand = Plus / Plus

                                                                       
Query: 243 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 302
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 24  gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83

                                                                       
Query: 303 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 362
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 84  aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143

                                                                       
Query: 363 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 422
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 144 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 203

                                                                       
Query: 423 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 482
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 204 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 263

                                                                    
Query: 483 ttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           ||||||||||| |||||||||||| |||||||||||  |||||||||||||||||||
Sbjct: 264 ttcatgaccctccccaacatcaaggtcccactcatc-ctgggtatctggggaggcaa 319

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
           precursor, complete cds
          Length = 1706

 Score =  343 bits (173), Expect = 4e-91
 Identities = 267/297 (89%), Gaps = 1/297 (0%)
 Strand = Plus / Plus

                                                                       
Query: 243 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 302
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304

                                                                       
Query: 303 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 362
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364

                                                                       
Query: 363 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 422
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 365 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 424

                                                                       
Query: 423 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 482
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 425 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 484

                                                                    
Query: 483 ttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           ||||||||||| |||||||||||| |||||||||||  |||||||||||||||||||
Sbjct: 485 ttcatgaccctccccaacatcaaggtcccactcatc-ctgggtatctggggaggcaa 540



 Score =  165 bits (83), Expect = 2e-37
 Identities = 122/135 (90%)
 Strand = Plus / Plus

                                                                       
Query: 67  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 126
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 66  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 125

                                                                       
Query: 127 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 186
           | ||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 126 tggggaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaagagctcca 185

                          
Query: 187 aggccaacaggttca 201
           |   |||||||||||
Sbjct: 186 acatcaacaggttca 200

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
           precursor, complete cds
          Length = 1623

 Score =  343 bits (173), Expect = 4e-91
 Identities = 267/297 (89%), Gaps = 1/297 (0%)
 Strand = Plus / Plus

                                                                       
Query: 243 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 302
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298

                                                                       
Query: 303 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 362
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358

                                                                       
Query: 363 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 422
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 359 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 418

                                                                       
Query: 423 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 482
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 419 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 478

                                                                    
Query: 483 ttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           ||||||||||| |||||||||||| |||||||||||  |||||||||||||||||||
Sbjct: 479 ttcatgaccctccccaacatcaaggtcccactcatc-ctgggtatctggggaggcaa 534



 Score =  172 bits (87), Expect = 8e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 67  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 126
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 60  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 119

                                                                       
Query: 127 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 186
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 120 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 179

                          
Query: 187 aggccaacaggttca 201
           |   |||||||||||
Sbjct: 180 acatcaacaggttca 194

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase (rca) mRNA, complete cds
          Length = 1675

 Score =  335 bits (169), Expect = 9e-89
 Identities = 266/297 (89%), Gaps = 1/297 (0%)
 Strand = Plus / Plus

                                                                       
Query: 243 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 302
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271

                                                                       
Query: 303 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 362
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331

                                                                       
Query: 363 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 422
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 332 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 391

                                                                       
Query: 423 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 482
           ||||||||||||||||| ||| |||||||||||||||| || |||||  ||||||| |||
Sbjct: 392 ggaggcttctacatcgccccttctttcatggacaagctcgtcgtccacatctccaagaac 451

                                                                    
Query: 483 ttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           ||||||||||| |||||||||||| |||||||||||  |||||||||||||||||||
Sbjct: 452 ttcatgaccctccccaacatcaaggtcccactcatc-ctgggtatctggggaggcaa 507



 Score =  172 bits (87), Expect = 8e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 67  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 126
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 33  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 92

                                                                       
Query: 127 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 186
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 93  tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 152

                          
Query: 187 aggccaacaggttca 201
           |   |||||||||||
Sbjct: 153 acatcaacaggttca 167

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
           insert sequence
          Length = 1721

 Score =  335 bits (169), Expect = 9e-89
 Identities = 266/297 (89%), Gaps = 1/297 (0%)
 Strand = Plus / Plus

                                                                       
Query: 243 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 302
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311

                                                                       
Query: 303 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 362
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371

                                                                       
Query: 363 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 422
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 372 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 431

                                                                       
Query: 423 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 482
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 432 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 491

                                                                    
Query: 483 ttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           ||||||||||| |||||||||||| ||||||||| |  |||||||||||||||||||
Sbjct: 492 ttcatgaccctccccaacatcaaggtcccactca-ccctgggtatctggggaggcaa 547



 Score =  172 bits (87), Expect = 8e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 67  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 126
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 73  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 132

                                                                       
Query: 127 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 186
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 133 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 192

                          
Query: 187 aggccaacaggttca 201
           |   |||||||||||
Sbjct: 193 acatcaacaggttca 207

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B
           (RcaB) mRNA, complete cds; nuclear gene for chloroplast
           product
          Length = 1525

 Score =  293 bits (148), Expect = 3e-76
 Identities = 257/292 (88%), Gaps = 1/292 (0%)
 Strand = Plus / Plus

                                                                       
Query: 248 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 307
           |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| ||
Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276

                                                                       
Query: 308 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 367
           |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| ||
Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336

                                                                       
Query: 368 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 427
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||  ||
Sbjct: 337 ctcctacgagtacatcagccagggcctgcgcaagtacgacttcgacaacaccatggacgg 396

                                                                       
Query: 428 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 487
             | |||||||| || || ||||||||||||||  | ||||| ||| |||| ||||||||
Sbjct: 397 gctgtacatcgccccggcgttcatggacaagctcatcgtccacctcgccaagaacttcat 456

                                                               
Query: 488 gaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           ||| || |||||||||||| |||| ||||||  |||||||||||||||||||
Sbjct: 457 gacactccccaacatcaaggtccctctcatc-ctgggtatctggggaggcaa 507



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 72/83 (86%)
 Strand = Plus / Plus

                                                                       
Query: 68  gatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcct 127
           ||||||| |||| ||||| |||||||| || |||||||| || || ||||||| ||||||
Sbjct: 25  gatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcct 84

                                  
Query: 128 cgggaagaagctcaagaagcagg 150
           |||||||||| | ||||||||||
Sbjct: 85  cgggaagaaggtgaagaagcagg 107

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score =  285 bits (144), Expect = 7e-74
 Identities = 256/292 (87%), Gaps = 1/292 (0%)
 Strand = Plus / Plus

                                                                       
Query: 248 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 307
           |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429

                                                                       
Query: 308 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 367
           |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| ||
Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489

                                                                       
Query: 368 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 427
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 490 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 549

                                                                       
Query: 428 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 487
             | |||||||| || || ||||||||||||||  | ||||| ||| |||| ||||||||
Sbjct: 550 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 609

                                                               
Query: 488 gaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           ||| || |||||||||||| | || ||||||  |||||||||||||||||||
Sbjct: 610 gacactccccaacatcaaggttcctctcatc-ctgggtatctggggaggcaa 660

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
           insert sequence
          Length = 1682

 Score =  208 bits (105), Expect = 1e-50
 Identities = 157/173 (90%), Gaps = 1/173 (0%)
 Strand = Plus / Plus

                                                                       
Query: 367 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 426
           |||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||||||
Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386

                                                                       
Query: 427 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttca 486
           ||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||||||
Sbjct: 387 gcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttca 446

                                                                
Query: 487 tgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           ||||||| |||||||||||| |||||||||||  |||||||||||||||||||
Sbjct: 447 tgaccctccccaacatcaaggtcccactcatc-ctgggtatctggggaggcaa 498



 Score =  172 bits (87), Expect = 8e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 67  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 126
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                                                                       
Query: 127 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 186
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180

                          
Query: 187 aggccaacaggttca 201
           |   |||||||||||
Sbjct: 181 acatcaacaggttca 195



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 78/89 (87%)
 Strand = Plus / Plus

                                                                       
Query: 243 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 302
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                                        
Query: 303 aagggcatcgtggactcgctcttccaggc 331
           |||||  |||| ||||| || ||||||||
Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  188 bits (95), Expect = 1e-44
 Identities = 129/139 (92%), Gaps = 1/139 (0%)
 Strand = Plus / Minus

                                                                          
Query: 401    gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 460
              ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 109376

                                                                          
Query: 461    tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 520
               || |||||  ||||||| |||||||||||||| |||||||||||| |||||||||||  
Sbjct: 109375 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatc-c 109317

                                 
Query: 521    tgggtatctggggaggcaa 539
              |||||||||||||||||||
Sbjct: 109316 tgggtatctggggaggcaa 109298



 Score =  176 bits (89), Expect = 5e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                          
Query: 243    gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 302
              |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647

                                                                          
Query: 303    aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 362
              |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587

                                           
Query: 363    ctcagctcctacgagtacgtcagccaggg 391
              |||||||||||||||||| ||||||||||
Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558



 Score =  125 bits (63), Expect = 2e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                          
Query: 248    gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 307
              ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146

                                                                 
Query: 308    catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 358
              | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095



 Score =  119 bits (60), Expect = 1e-23
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                          
Query: 114    ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 173
              |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779

                                          
Query: 174    ggcaagagctccaaggccaacaggttca 201
              ||||||||||||||   |||||||||||
Sbjct: 109778 ggcaagagctccaacatcaacaggttca 109751



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                     
Query: 67     agatggctgctgccttctcctccaccgtcggggctccgg 105
              |||||||||||||||||||||||||||| || |||||||
Sbjct: 109984 agatggctgctgccttctcctccaccgttggagctccgg 109946

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  188 bits (95), Expect = 1e-44
 Identities = 129/139 (92%), Gaps = 1/139 (0%)
 Strand = Plus / Minus

                                                                         
Query: 401   gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 460
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 31253

                                                                         
Query: 461   tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 520
              || |||||  ||||||| |||||||||||||| |||||||||||| |||||||||||  
Sbjct: 31252 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatc-c 31194

                                
Query: 521   tgggtatctggggaggcaa 539
             |||||||||||||||||||
Sbjct: 31193 tgggtatctggggaggcaa 31175



 Score =  176 bits (89), Expect = 5e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                         
Query: 243   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 302
             |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524

                                                                         
Query: 303   aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 362
             |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464

                                          
Query: 363   ctcagctcctacgagtacgtcagccaggg 391
             |||||||||||||||||| ||||||||||
Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435



 Score =  125 bits (63), Expect = 2e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                         
Query: 248   gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 307
             ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023

                                                                
Query: 308   catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 358
             | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972



 Score =  119 bits (60), Expect = 1e-23
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                         
Query: 114   ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 173
             |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656

                                         
Query: 174   ggcaagagctccaaggccaacaggttca 201
             ||||||||||||||   |||||||||||
Sbjct: 31655 ggcaagagctccaacatcaacaggttca 31628



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 67    agatggctgctgccttctcctccaccgtcggggctccgg 105
             |||||||||||||||||||||||||||| || |||||||
Sbjct: 31861 agatggctgctgccttctcctccaccgttggagctccgg 31823

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  188 bits (95), Expect = 1e-44
 Identities = 129/139 (92%), Gaps = 1/139 (0%)
 Strand = Plus / Minus

                                                                            
Query: 401      gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 460
                ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28304515

                                                                            
Query: 461      tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 520
                 || |||||  ||||||| |||||||||||||| |||||||||||| |||||||||||  
Sbjct: 28304514 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatc-c 28304456

                                   
Query: 521      tgggtatctggggaggcaa 539
                |||||||||||||||||||
Sbjct: 28304455 tgggtatctggggaggcaa 28304437



 Score =  176 bits (89), Expect = 5e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                            
Query: 243      gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 302
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786

                                                                            
Query: 303      aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 362
                |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726

                                             
Query: 363      ctcagctcctacgagtacgtcagccaggg 391
                |||||||||||||||||| ||||||||||
Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697



 Score =  125 bits (63), Expect = 2e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                            
Query: 248      gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 307
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285

                                                                   
Query: 308      catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 358
                | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234



 Score =  119 bits (60), Expect = 1e-23
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 114      ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 173
                |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918

                                            
Query: 174      ggcaagagctccaaggccaacaggttca 201
                ||||||||||||||   |||||||||||
Sbjct: 28304917 ggcaagagctccaacatcaacaggttca 28304890



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 67       agatggctgctgccttctcctccaccgtcggggctccgg 105
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28305123 agatggctgctgccttctcctccaccgttggagctccgg 28305085

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  188 bits (95), Expect = 1e-44
 Identities = 129/139 (92%), Gaps = 1/139 (0%)
 Strand = Plus / Minus

                                                                            
Query: 401      gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 460
                ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28286964

                                                                            
Query: 461      tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 520
                 || |||||  ||||||| |||||||||||||| |||||||||||| |||||||||||  
Sbjct: 28286963 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatc-c 28286905

                                   
Query: 521      tgggtatctggggaggcaa 539
                |||||||||||||||||||
Sbjct: 28286904 tgggtatctggggaggcaa 28286886



 Score =  176 bits (89), Expect = 5e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                            
Query: 243      gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 302
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235

                                                                            
Query: 303      aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 362
                |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175

                                             
Query: 363      ctcagctcctacgagtacgtcagccaggg 391
                |||||||||||||||||| ||||||||||
Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146



 Score =  125 bits (63), Expect = 2e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                            
Query: 248      gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 307
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734

                                                                   
Query: 308      catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 358
                | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683



 Score =  119 bits (60), Expect = 1e-23
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 114      ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 173
                |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367

                                            
Query: 174      ggcaagagctccaaggccaacaggttca 201
                ||||||||||||||   |||||||||||
Sbjct: 28287366 ggcaagagctccaacatcaacaggttca 28287339



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 67       agatggctgctgccttctcctccaccgtcggggctccgg 105
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28287572 agatggctgctgccttctcctccaccgttggagctccgg 28287534

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
           precursor (rca1) mRNA, complete cds
          Length = 1424

 Score =  184 bits (93), Expect = 2e-43
 Identities = 247/297 (83%), Gaps = 1/297 (0%)
 Strand = Plus / Plus

                                                                       
Query: 243 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 302
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                                                                       
Query: 303 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 362
           |||||| |||| |||   |||||||||||||| | ||| |||||||||||||  ||||| 
Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332

                                                                       
Query: 363 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 422
           |||||||||||||| ||| ||||||||||||    |   ||| ||||||||||||  |||
Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392

                                                                       
Query: 423 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 482
           |  ||||||||||| ||    |  |||||||||||||| || ||||| |||||||| |||
Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452

                                                                    
Query: 483 ttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           |||||||||||||| ||||||||| | || ||||||  |||||||||||||||||||
Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatc-ctgggtatctggggaggcaa 508



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 107/127 (84%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 69  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 122
           ||||| || |||||||||||||||||||| |||||||| || || |||||||       |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                                                                       
Query: 123 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 179
           |||||||||||||||||||| ||||   ||||| || ||||||||| |||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140

                  
Query: 180 agctcca 186
           |||||||
Sbjct: 141 agctcca 147

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score =  168 bits (85), Expect = 1e-38
 Identities = 218/261 (83%), Gaps = 1/261 (0%)
 Strand = Plus / Plus

                                                                       
Query: 279 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 338
           |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| |
Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294

                                                                       
Query: 339 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 398
           |||||||| |||||| |  ||||||| ||||||||||||||| |||||   || || || 
Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 354

                                                                       
Query: 399 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 458
             || | |||| ||||||||| ||   || || ||||||||||| || ||||||||||||
Sbjct: 355 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 414

                                                                       
Query: 459 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 518
           ||||| || ||  || |||| |||||||||| | |||||||||||||||| || ||||| 
Sbjct: 415 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcat- 473

                                
Query: 519 tttgggtatctggggaggcaa 539
           |||||||||||||||||||||
Sbjct: 474 tttgggtatctggggaggcaa 494

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score =  168 bits (85), Expect = 1e-38
 Identities = 218/261 (83%), Gaps = 1/261 (0%)
 Strand = Plus / Plus

                                                                       
Query: 279 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 338
           |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| |
Sbjct: 98  gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157

                                                                       
Query: 339 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 398
           |||||||| |||||| |  ||||||| ||||||||||||||| |||||   || || || 
Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 217

                                                                       
Query: 399 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 458
             || | |||| ||||||||| ||   || || ||||||||||| || ||||||||||||
Sbjct: 218 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 277

                                                                       
Query: 459 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 518
           ||||| || ||  || |||| |||||||||| | |||||||||||||||| || ||||| 
Sbjct: 278 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcat- 336

                                
Query: 519 tttgggtatctggggaggcaa 539
           |||||||||||||||||||||
Sbjct: 337 tttgggtatctggggaggcaa 357

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score =  168 bits (85), Expect = 1e-38
 Identities = 218/261 (83%), Gaps = 1/261 (0%)
 Strand = Plus / Plus

                                                                       
Query: 279 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 338
           |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| |
Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187

                                                                       
Query: 339 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 398
           |||||||| |||||| |  ||||||| ||||||||||||||| |||||   || || || 
Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 247

                                                                       
Query: 399 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 458
             || | |||| ||||||||| ||   || || ||||||||||| || ||||||||||||
Sbjct: 248 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 307

                                                                       
Query: 459 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 518
           ||||| || ||  || |||| |||||||||| | |||||||||||||||| || ||||| 
Sbjct: 308 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcat- 366

                                
Query: 519 tttgggtatctggggaggcaa 539
           |||||||||||||||||||||
Sbjct: 367 tttgggtatctggggaggcaa 387

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score =  147 bits (74), Expect = 4e-32
 Identities = 241/297 (81%), Gaps = 1/297 (0%)
 Strand = Plus / Plus

                                                                       
Query: 243 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 302
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                                                                       
Query: 303 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 362
           |||||| |||| |||   |||||||||||||| |      ||||||||||||  ||||| 
Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332

                                                                       
Query: 363 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 422
           |||||||||||||| ||| ||||||||||||    |   ||| ||||||||||||  |||
Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392

                                                                       
Query: 423 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 482
           |  ||||||||||| ||    |  |||||||||||||| || ||||| |||||||| |||
Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452

                                                                    
Query: 483 ttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           |||||||||||||| ||||||||| | || ||||||  ||||||||  |||||||||
Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatc-ctgggtatcgtgggaggcaa 508



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 107/127 (84%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 69  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 122
           ||||| || |||||||||||||||||||| |||||||| || || |||||||       |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                                                                       
Query: 123 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 179
           |||||||||||||||||||| ||||   ||||| || ||||||||| |||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140

                  
Query: 180 agctcca 186
           |||||||
Sbjct: 141 agctcca 147

---

>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 1 mRNA, complete cds
          Length = 1559

 Score =  117 bits (59), Expect = 4e-23
 Identities = 234/291 (80%), Gaps = 1/291 (0%)
 Strand = Plus / Plus

                                                                       
Query: 249 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggc 308
           |||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| || 
Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaaaggt 339

                                                                       
Query: 309 atcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 368
           || || |||||  | ||||| || |||| |  ||| || || ||| | || ||| | |||
Sbjct: 340 atggtcgactcattgttccaagctcccatgaacgatggtactcactatgctgtcatgagc 399

                                                                       
Query: 369 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 428
           ||||| |||||| | ||||| ||||| || |  |||||||| ||||||| |||||  || 
Sbjct: 400 tcctatgagtacattagccaaggccttcgcacatacgacttggacaacaacatggatgga 459

                                                                       
Query: 429 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 488
           |||||||| || || ||||||||||||||||||||||| ||  || |||| |||| ||||
Sbjct: 460 ttctacattgccccagctttcatggacaagcttgttgttcacatcaccaagaactacatg 519

                                                              
Query: 489 accctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           ||||| || ||||| ||| | || || ||| |||||||| |||||||||||
Sbjct: 520 acccttcctaacattaaggttcctcttatc-ttgggtatttggggaggcaa 569

---

>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete
           cds
          Length = 1674

 Score =  117 bits (59), Expect = 4e-23
 Identities = 144/171 (84%), Gaps = 1/171 (0%)
 Strand = Plus / Plus

                                                                       
Query: 369 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 428
           |||||||| ||||||||||| || || ||  ||||| |||| |||||||   |||  || 
Sbjct: 396 tcctacgaatacgtcagccaaggtcttcgccagtacaacttggacaacaagttggacgga 455

                                                                       
Query: 429 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 488
           |||||||||||||||||||||||||||||||||||||| ||  || |||| |||||| ||
Sbjct: 456 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttg 515

                                                              
Query: 489 accctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           |   |||||||||||||| | ||||| ||| ||||||||||||||||||||
Sbjct: 516 aaattgcccaacatcaaggttccacttatc-ttgggtatctggggaggcaa 565

---

>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
           transcript variant AT2G39730.2 mRNA, complete cds
          Length = 1815

 Score =  111 bits (56), Expect = 2e-21
 Identities = 150/180 (83%), Gaps = 1/180 (0%)
 Strand = Plus / Plus

                                                                       
Query: 360 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 419
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555

                                                                       
Query: 420 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 479
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615

                                                                       
Query: 480 aacttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           |||||| |||| ||||| ||||||||| | ||||| || ||||||||| |||||||||||
Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttat-tttgggtatatggggaggcaa 674

---

>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
           transcript variant AT2G39730.3 mRNA, complete cds
          Length = 1928

 Score =  111 bits (56), Expect = 2e-21
 Identities = 150/180 (83%), Gaps = 1/180 (0%)
 Strand = Plus / Plus

                                                                       
Query: 360 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 419
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555

                                                                       
Query: 420 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 479
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615

                                                                       
Query: 480 aacttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           |||||| |||| ||||| ||||||||| | ||||| || ||||||||| |||||||||||
Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttat-tttgggtatatggggaggcaa 674

---

>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
           transcript variant AT2G39730.1 mRNA, complete cds
          Length = 1833

 Score =  111 bits (56), Expect = 2e-21
 Identities = 150/180 (83%), Gaps = 1/180 (0%)
 Strand = Plus / Plus

                                                                       
Query: 360 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 419
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584

                                                                       
Query: 420 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 479
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644

                                                                       
Query: 480 aacttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           |||||| |||| ||||| ||||||||| | ||||| || ||||||||| |||||||||||
Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttat-tttgggtatatggggaggcaa 703

---

>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein
           (At2g39730) mRNA, complete cds
          Length = 1697

 Score =  111 bits (56), Expect = 2e-21
 Identities = 150/180 (83%), Gaps = 1/180 (0%)
 Strand = Plus / Plus

                                                                       
Query: 360 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 419
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466

                                                                       
Query: 420 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 479
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526

                                                                       
Query: 480 aacttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           |||||| |||| ||||| ||||||||| | ||||| || ||||||||| |||||||||||
Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttat-tttgggtatatggggaggcaa 585

---

>gb|BT000613.1| Arabidopsis thaliana Rubsico activase  (At2g39730/T5I7.3) mRNA,
           complete cds
          Length = 1425

 Score =  111 bits (56), Expect = 2e-21
 Identities = 150/180 (83%), Gaps = 1/180 (0%)
 Strand = Plus / Plus

                                                                       
Query: 360 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 419
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 322 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 381

                                                                       
Query: 420 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 479
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 382 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 441

                                                                       
Query: 480 aacttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           |||||| |||| ||||| ||||||||| | ||||| || ||||||||| |||||||||||
Sbjct: 442 aacttcttgactctgcctaacatcaaggttccacttat-tttgggtatatggggaggcaa 500

---

>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds
          Length = 1674

 Score =  111 bits (56), Expect = 2e-21
 Identities = 150/180 (83%), Gaps = 1/180 (0%)
 Strand = Plus / Plus

                                                                       
Query: 360 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 419
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469

                                                                       
Query: 420 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 479
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529

                                                                       
Query: 480 aacttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           |||||| |||| ||||| ||||||||| | ||||| || ||||||||| |||||||||||
Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttat-tttgggtatatggggaggcaa 588

---

>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds
          Length = 1693

 Score =  111 bits (56), Expect = 2e-21
 Identities = 150/180 (83%), Gaps = 1/180 (0%)
 Strand = Plus / Plus

                                                                       
Query: 360 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 419
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 399 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 458

                                                                       
Query: 420 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 479
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 459 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 518

                                                                       
Query: 480 aacttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           |||||| |||| ||||| ||||||||| | ||||| || ||||||||| |||||||||||
Sbjct: 519 aacttcttgactctgcctaacatcaaggttccacttat-tttgggtatatggggaggcaa 577

---

>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds
          Length = 1655

 Score =  111 bits (56), Expect = 2e-21
 Identities = 150/180 (83%), Gaps = 1/180 (0%)
 Strand = Plus / Plus

                                                                       
Query: 360 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 419
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466

                                                                       
Query: 420 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 479
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526

                                                                       
Query: 480 aacttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           |||||| |||| ||||| ||||||||| | ||||| || ||||||||| |||||||||||
Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttat-tttgggtatatggggaggcaa 585

---

>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete
           cds
          Length = 1674

 Score =  111 bits (56), Expect = 2e-21
 Identities = 150/180 (83%), Gaps = 1/180 (0%)
 Strand = Plus / Plus

                                                                       
Query: 360 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 419
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469

                                                                       
Query: 420 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 479
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529

                                                                       
Query: 480 aacttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           |||||| |||| ||||| ||||||||| | ||||| || ||||||||| |||||||||||
Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttat-tttgggtatatggggaggcaa 588

---

>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence
          Length = 1787

 Score =  111 bits (56), Expect = 2e-21
 Identities = 150/180 (83%), Gaps = 1/180 (0%)
 Strand = Plus / Plus

                                                                       
Query: 360 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 419
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584

                                                                       
Query: 420 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 479
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644

                                                                       
Query: 480 aacttcatgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           |||||| |||| ||||| ||||||||| | ||||| || ||||||||| |||||||||||
Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttat-tttgggtatatggggaggcaa 703

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score =  103 bits (52), Expect = 6e-19
 Identities = 95/108 (87%), Gaps = 1/108 (0%)
 Strand = Plus / Plus

                                                                       
Query: 432 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 491
           ||||||||||| || ||||||||||||||||| || ||  || |||| |||||||||| |
Sbjct: 87  tacatcgctccggccttcatggacaagcttgtcgttcacatcaccaagaacttcatgaac 146

                                                           
Query: 492 ctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
            |||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct: 147 ttgcccaacatcaagattcctctcat-tttgggtatctggggaggcaa 193

---

>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase
           (pJQ4)
          Length = 1655

 Score =  101 bits (51), Expect = 2e-18
 Identities = 97/111 (87%), Gaps = 1/111 (0%)
 Strand = Plus / Plus

                                                                       
Query: 429 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 488
           ||||||||||||||| |||||||||||||||||||||| ||  || |||| |||||| ||
Sbjct: 426 ttctacatcgctccttctttcatggacaagcttgttgttcacatcaccaagaacttcttg 485

                                                              
Query: 489 accctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           |   |||||||||||||| | |||||||| ||||||| |||||||||||||
Sbjct: 486 aaattgcccaacatcaaggttccactcat-tttgggtgtctggggaggcaa 535

---

>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 83/93 (89%), Gaps = 1/93 (1%)
 Strand = Plus / Plus

                                                                       
Query: 447 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 506
           |||||||||||||| || ||||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 22  ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 81

                                            
Query: 507 atcccactcatctttgggtatctggggaggcaa 539
            | || ||||||  |||||||||||||||||||
Sbjct: 82  gttcccctcatc-ctgggtatctggggaggcaa 113

---

>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds
          Length = 1634

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 94/108 (87%), Gaps = 1/108 (0%)
 Strand = Plus / Plus

                                                                       
Query: 429 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 488
           |||||||| ||||| |||||||||||||||||||| || ||  || ||||||||||||||
Sbjct: 476 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 535

                                                           
Query: 489 accctgcccaacatcaagatcccactcatctttgggtatctggggagg 536
           || || |||||||| ||| | || ||||| ||||||||||||||||||
Sbjct: 536 actctccccaacataaaggttcctctcat-tttgggtatctggggagg 582

---

>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear
           gene for chloroplast product
          Length = 1671

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 96/111 (86%), Gaps = 1/111 (0%)
 Strand = Plus / Plus

                                                                       
Query: 429 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 488
           |||||||| |||||||||||  |||||||||||||||| ||  || |||| |||||||||
Sbjct: 469 ttctacattgctcctgcttttctggacaagcttgttgttcacatcaccaagaacttcatg 528

                                                              
Query: 489 accctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           ||| |||||||||||||| | || ||||| | | |||||||||||||||||
Sbjct: 529 accttgcccaacatcaaggttcctctcat-tcttggtatctggggaggcaa 578



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 249 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 307
           ||||||||||| || ||||||||||| || ||||| || |||||||| || ||||||||
Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353

---

>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase
          Length = 1652

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 122/147 (82%)
 Strand = Plus / Plus

                                                                       
Query: 360 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 419
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 391 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 450

                                                                       
Query: 420 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 479
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 451 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 510

                                      
Query: 480 aacttcatgaccctgcccaacatcaag 506
           |||||| |||| ||||| |||||||||
Sbjct: 511 aacttcttgactctgcctaacatcaag 537

---

>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds
          Length = 1656

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 98/114 (85%), Gaps = 1/114 (0%)
 Strand = Plus / Plus

                                                                       
Query: 426 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 485
           ||||||||||| || ||||||||||||||||| |||||||| ||  || |||| ||||||
Sbjct: 434 ggcttctacattgcccctgctttcatggacaaacttgttgttcacatcaccaagaacttc 493

                                                                 
Query: 486 atgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
            ||||  |||||||||||||| | ||||||||| |||||| | |||||||||||
Sbjct: 494 ttgacattgcccaacatcaaggttccactcatc-ttgggtgtatggggaggcaa 546

---

>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence
          Length = 1519

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 93/108 (86%), Gaps = 1/108 (0%)
 Strand = Plus / Plus

                                                                       
Query: 429 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 488
           |||||||||||||||||||||||||||||||||||||| ||  || |||| |||||| | 
Sbjct: 473 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttctta 532

                                                           
Query: 489 accctgcccaacatcaagatcccactcatctttgggtatctggggagg 536
           ||  |||||||||||||| | ||||| || ||||||| | ||||||||
Sbjct: 533 acgttgcccaacatcaaggttccacttat-tttgggtgtttggggagg 579

---

>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds
          Length = 1832

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 94/110 (85%), Gaps = 1/110 (0%)
 Strand = Plus / Plus

                                                                       
Query: 430 tctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatga 489
           ||||||| || ||||| || ||||||||||||||||| ||  || |||| |||||| |||
Sbjct: 630 tctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttcttga 689

                                                             
Query: 490 ccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
            | |||||||||||||||| ||||||||| |||||| | |||||||||||
Sbjct: 690 acttgcccaacatcaagataccactcatc-ttgggtgtttggggaggcaa 738

---

>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase alpha 2 mRNA, complete cds
          Length = 1433

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 108/129 (83%), Gaps = 1/129 (0%)
 Strand = Plus / Plus

                                                                       
Query: 411 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 470
           ||||||| |||||  || |||||||| |||||||| |||||||||||||||||||| || 
Sbjct: 256 gacaacaacatggatggtttctacattgctcctgcattcatggacaagcttgttgttcac 315

                                                                       
Query: 471 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctttgggtatctg 530
            || |||| ||||||||| |||| || ||||| ||| | || || ||| |||||||| ||
Sbjct: 316 atcaccaagaacttcatgtccctccctaacattaaggttcctctaatc-ttgggtatttg 374

                    
Query: 531 gggaggcaa 539
           |||||||||
Sbjct: 375 gggaggcaa 383

---

>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene)
          Length = 678

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 93/109 (85%), Gaps = 1/109 (0%)
 Strand = Plus / Plus

                                                                       
Query: 431 ctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgac 490
           |||||| ||||||||||| ||||||||||||||||| ||  |||| ||||||||||||| 
Sbjct: 156 ctacattgctcctgcttttatggacaagcttgttgttcacatctcgaaaaacttcatgaa 215

                                                            
Query: 491 cctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           | |||| ||||||||| | || ||||| | | ||||| |||||||||||
Sbjct: 216 cttgcctaacatcaaggttcctctcat-tcttggtatttggggaggcaa 263

---

>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
           complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 116/140 (82%), Gaps = 1/140 (0%)
 Strand = Plus / Plus

                                                                       
Query: 400 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 459
           ||||| |||| ||||||| |||||  || |||||||| || || || |||||||||||||
Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490

                                                                       
Query: 460 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 519
           |||| |||||  || |||| |||||| |||  || || ||||||||||| || || ||| 
Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatc- 549

                               
Query: 520 ttgggtatctggggaggcaa 539
           ||||||||||||||||||||
Sbjct: 550 ttgggtatctggggaggcaa 569

---

>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1724

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 116/140 (82%), Gaps = 1/140 (0%)
 Strand = Plus / Plus

                                                                       
Query: 400 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 459
           ||||| |||| ||||||| |||||  || |||||||| || || || |||||||||||||
Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490

                                                                       
Query: 460 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 519
           |||| |||||  || |||| |||||| |||  || || ||||||||||| || || ||| 
Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatc- 549

                               
Query: 520 ttgggtatctggggaggcaa 539
           ||||||||||||||||||||
Sbjct: 550 ttgggtatctggggaggcaa 569

---

>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds
          Length = 1627

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 116/140 (82%), Gaps = 1/140 (0%)
 Strand = Plus / Plus

                                                                       
Query: 400 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 459
           ||||| |||| ||||||| || ||  || |||||||| ||||| |||||  |||||||||
Sbjct: 436 agtacaactttgacaacatcaaggatggtttctacattgctccagcttttttggacaagc 495

                                                                       
Query: 460 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 519
           ||||||| ||  || |||| |||||||||||| |||||||||||||| | || ||||| |
Sbjct: 496 ttgttgttcacatcgccaagaacttcatgaccttgcccaacatcaaggttcctctcat-t 554

                               
Query: 520 ttgggtatctggggaggcaa 539
            | ||| |||||||||||||
Sbjct: 555 cttggtgtctggggaggcaa 574

---

>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete
             sequence
          Length = 92624

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                         
Query: 432   tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 491
             ||||| ||||||||||||||||||||||||||||| ||  || |||| |||||| |||| 
Sbjct: 14910 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 14851

                            
Query: 492   ctgcccaacatcaag 506
             ||||| |||||||||
Sbjct: 14850 ctgcctaacatcaag 14836

---

>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase
            activase (rca) gene, complete cds
          Length = 3974

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                        
Query: 432  tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 491
            ||||| ||||||||||||||||||||||||||||| ||  || |||| |||||| |||| 
Sbjct: 2373 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 2432

                           
Query: 492  ctgcccaacatcaag 506
            ||||| |||||||||
Sbjct: 2433 ctgcctaacatcaag 2447

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase mRNA
          Length = 1853

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 87/102 (85%), Gaps = 1/102 (0%)
 Strand = Plus / Plus

                                                                       
Query: 438 gctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgccc 497
           ||||| ||||| ||||||||||||||||| ||  || |||| |||||||||||||| || 
Sbjct: 485 gctcccgcttttatggacaagcttgttgttcacatcaccaagaacttcatgacccttcct 544

                                                     
Query: 498 aacatcaagatcccactcatctttgggtatctggggaggcaa 539
           ||||| ||| | || |||||| |||||||| |||||||||||
Sbjct: 545 aacatgaaggttcctctcatc-ttgggtatttggggaggcaa 585



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                       
Query: 272 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggc 331
           |||||||||||| || |||||||| ||||| ||||| |  |||||||| |||||||||||
Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378

---

>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 2 mRNA, partial cds
          Length = 1462

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 107/129 (82%), Gaps = 1/129 (0%)
 Strand = Plus / Plus

                                                                       
Query: 411 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 470
           ||||||| |||||  || ||||||||||||||||| |||||||||||||||||||| || 
Sbjct: 257 gacaacaacatggatggtttctacatcgctcctgcattcatggacaagcttgttgttcac 316

                                                                       
Query: 471 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctttgggtatctg 530
            ||  ||| ||||||||| |||| || ||||| ||| | || || |||  ||||||| ||
Sbjct: 317 atcagcaagaacttcatgtccctccctaacattaaggttcctctaatc-ctgggtatttg 375

                    
Query: 531 gggaggcaa 539
           |||||||||
Sbjct: 376 gggaggcaa 384

---

>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds
          Length = 1216

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                       
Query: 429 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 488
           |||||||| ||||| |||||||||||||||||||| || ||  || ||||||||||||||
Sbjct: 6   ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 65

             
Query: 489 ac 490
           ||
Sbjct: 66  ac 67

---

>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase
            {alternatively spliced} [spinach, Genomic, 3691 nt]
          Length = 3691

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 67/79 (84%)
 Strand = Plus / Plus

                                                                        
Query: 428  cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 487
            ||||||||| || ||||| || ||||||||||||||||| ||  || |||| |||||| |
Sbjct: 2067 cttctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttctt 2126

                               
Query: 488  gaccctgcccaacatcaag 506
            || | ||||||||||||||
Sbjct: 2127 gaacttgcccaacatcaag 2145

---

>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence
          Length = 163160

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                     
Query: 411   gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgt 466
             |||||||||||||  || || ||||| || |||||||| |||||||||||||||||
Sbjct: 84295 gacaacaccatggatggtttttacattgcacctgcttttatggacaagcttgttgt 84240

---

>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds
          Length = 1809

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 92/112 (82%), Gaps = 1/112 (0%)
 Strand = Plus / Plus

                                                                       
Query: 428 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 487
           ||||||||| || ||| |||||||||||||| ||||||| ||  || |||| |||| | |
Sbjct: 514 cttctacattgccccttctttcatggacaagattgttgttcacatcaccaagaactactt 573

                                                               
Query: 488 gaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
           || | |||| ||||||||| | || || ||| |||||||| |||||||||||
Sbjct: 574 gaacttgcctaacatcaaggttcccctgatc-ttgggtatttggggaggcaa 624

---

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 274     ccgacgaccagcaggacatcacc 296
               |||||||||||||||||||||||
Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066

---

>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 316     actcgctcttccaggcgcccac 337
               ||||||||||||||||||||||
Sbjct: 2553524 actcgctcttccaggcgcccac 2553503

---

>gb|AC098586.3| Homo sapiens BAC clone RP11-109F18 from 4, complete sequence
          Length = 150172

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 514   tcatctttgggtatctggggag 535
             ||||||||||||||||||||||
Sbjct: 71408 tcatctttgggtatctggggag 71387

---

>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 92/114 (80%), Gaps = 1/114 (0%)
 Strand = Plus / Plus

                                                                        
Query: 426  ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 485
            |||||||||||| ||||||||||| |||| ||| |     ||||| |  |||| ||||||
Sbjct: 1128 ggcttctacatctctcctgctttcctggataagatgaccatccatgttgccaagaacttc 1187

                                                                  
Query: 486  atgaccctgcccaacatcaagatcccactcatctttgggtatctggggaggcaa 539
            |||  ||||||||| |||||| | || |||||| | |||||||||||| |||||
Sbjct: 1188 atggacctgcccaagatcaaggttcccctcatcct-gggtatctggggtggcaa 1240

---

>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 131    gaagaagctcaagaagcaggtg 152
              ||||||||||||||||||||||
Sbjct: 632957 gaagaagctcaagaagcaggtg 632978

---

>emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA
          Length = 929

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 59  cagcacagagatggctgctgc 79
           |||||||||||||||||||||
Sbjct: 531 cagcacagagatggctgctgc 511

---

>emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA
          Length = 939

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 59  cagcacagagatggctgctgc 79
           |||||||||||||||||||||
Sbjct: 541 cagcacagagatggctgctgc 521

---

>emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA
          Length = 992

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 59  cagcacagagatggctgctgc 79
           |||||||||||||||||||||
Sbjct: 595 cagcacagagatggctgctgc 575

---

>emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA
          Length = 1318

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 59  cagcacagagatggctgctgc 79
           |||||||||||||||||||||
Sbjct: 932 cagcacagagatggctgctgc 912

---

>emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA
          Length = 1006

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 59  cagcacagagatggctgctgc 79
           |||||||||||||||||||||
Sbjct: 609 cagcacagagatggctgctgc 589

---

>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase
           activase mRNA, complete cds
          Length = 1693

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 55/65 (84%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                       
Query: 475 ccaaaaacttcatgaccctgcccaacatcaagatcccactcatctttgggtatctgggga 534
           |||| |||||||||  ||||||||| |||||| | || ||||| | ||||||||||||| 
Sbjct: 406 ccaagaacttcatggacctgcccaagatcaaggtgcccctcat-tctgggtatctggggt 464

                
Query: 535 ggcaa 539
           |||||
Sbjct: 465 ggcaa 469

---

>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 206     catggcagcggagaacatcg 225
               ||||||||||||||||||||
Sbjct: 1379894 catggcagcggagaacatcg 1379875

---

>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 70  tggctgctgccttctcctcc 89
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome
          Length = 10732

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 270  atctccgacgaccagcaggacatc 293
            |||||| |||||||||||||||||
Sbjct: 8676 atctcccacgaccagcaggacatc 8653

---

>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    gcagcggagaacatcgacga 229
              ||||||||||||||||||||
Sbjct: 173412 gcagcggagaacatcgacga 173393

---

>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA
          Length = 1685

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 333  cccacgggcgacggcacccacgag 356
            ||||||||||||| ||||||||||
Sbjct: 1369 cccacgggcgacgtcacccacgag 1392

---

>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor;
            testicular feminization; spinal and bulbar muscular
            atrophy; Kennedy disease) (AR), mRNA
          Length = 3577

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 175  gcaagagctccaaggccaac 194
            ||||||||||||||||||||
Sbjct: 3271 gcaagagctccaaggccaac 3290

---

>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1),
           mRNA
          Length = 2502

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 70  tggctgctgccttctcctcc 89
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747

---

>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     ctgccttctcctccaccgtc 95
              ||||||||||||||||||||
Sbjct: 240861 ctgccttctcctccaccgtc 240842

---

>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 490     ccctgcccaacatcaagatc 509
               ||||||||||||||||||||
Sbjct: 1130357 ccctgcccaacatcaagatc 1130376

---

>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 206     catggcagcggagaacatcg 225
               ||||||||||||||||||||
Sbjct: 1380755 catggcagcggagaacatcg 1380736

---

>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila)
           (NOTCH1), mRNA
          Length = 9312

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 333 cccacgggcgacggcacccacgag 356
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:1494 IMAGE:3533568), complete cds
          Length = 2464

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 70  tggctgctgccttctcctcc 89
           ||||||||||||||||||||
Sbjct: 722 tggctgctgccttctcctcc 703

---

>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding
            protein 4 (LOC506402), mRNA
          Length = 7219

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 73   ctgctgccttctcctccacc 92
            ||||||||||||||||||||
Sbjct: 5008 ctgctgccttctcctccacc 4989

---

>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence
          Length = 457

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 73 ctgctgccttctcctccacc 92
          ||||||||||||||||||||
Sbjct: 65 ctgctgccttctcctccacc 46

---

>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence
          Length = 470

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 73 ctgctgccttctcctccacc 92
          ||||||||||||||||||||
Sbjct: 65 ctgctgccttctcctccacc 46

---

>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1)
            partial mRNA
          Length = 22443

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 131  gaagaagctcaagaagcagg 150
            ||||||||||||||||||||
Sbjct: 8385 gaagaagctcaagaagcagg 8404

---

>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:5049 IMAGE:2900024), complete cds
          Length = 3237

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 70  tggctgctgccttctcctcc 89
           ||||||||||||||||||||
Sbjct: 232 tggctgctgccttctcctcc 213

---

>gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, complete sequence
          Length = 193170

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 426    ggcttctacatcgctcctgctttc 449
              ||||||| ||||||||||||||||
Sbjct: 147044 ggcttctgcatcgctcctgctttc 147067

---

>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3'
              end of the gene for activator of G-protein signalling 3
              (AGS3), two novel genes, the CARD9 gene for caspase
              recruitment domain family member 9, the SNAPC4 gene for a
              190kDa small nuclear RNA activating complex polypeptide 4, 
              the SDCCAG3 gene for serologically defined colon cancer
              antigen 3, the INPP5E gene for a 72kDa inositol
              polyphosphate-5-phosphatase, the gene for
              phosphatidylinositol polyphosphate 5-phosphatase type IV
              (PPI5PIV), a novel gene (KIAA0310), the 3' end of the
              NOTCH1 gene for Notch homolog 1 translocation-associated
              (Drosophila) and twenty CpG islands, complete sequence
          Length = 188462

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 333    cccacgggcgacggcacccacgag 356
              ||||||||||||| ||||||||||
Sbjct: 166513 cccacgggcgacgtcacccacgag 166490

---

>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the
              gene for  Hermansky-Pudlak syndrome-6 protein (HPS6), two
              pseudogenes for  transcription elongation factor B (SIII),
              polypeptide 1, the LDB1 gene for LIM domain binding 1, a
              novel gene (KIAA0595), the NOLC1 gene for nucleolar and
              coiled-body phosphoprotein 1 and five CpG islands, complete
              sequence
          Length = 158434

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     tggctgctgccttctcctcc 89
              ||||||||||||||||||||
Sbjct: 101054 tggctgctgccttctcctcc 101035

---

>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body
           phosphoprotein 1 mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 70  tggctgctgccttctcctcc 89
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence
          Length = 147210

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   ccagagggaagggcatcgtg 314
             ||||||||||||||||||||
Sbjct: 35948 ccagagggaagggcatcgtg 35967

---

>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1812

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 70  tggctgctgccttctcctcc 89
           ||||||||||||||||||||
Sbjct: 717 tggctgctgccttctcctcc 698

---

>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar
           to H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2288

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 70  tggctgctgccttctcctcc 89
           ||||||||||||||||||||
Sbjct: 570 tggctgctgccttctcctcc 551

---

>gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, complete sequence
          Length = 141442

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 465   gtccatctctccaaaaactt 484
             ||||||||||||||||||||
Sbjct: 63248 gtccatctctccaaaaactt 63229

---

>gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-470F15, complete sequence
          Length = 177104

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     acagagatggctgctgcctt 82
              ||||||||||||||||||||
Sbjct: 121162 acagagatggctgctgcctt 121143

---

>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds
          Length = 3577

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 175  gcaagagctccaaggccaac 194
            ||||||||||||||||||||
Sbjct: 3271 gcaagagctccaaggccaac 3290

---

>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence
          Length = 81641

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   ccagagggaagggcatcgtg 314
             ||||||||||||||||||||
Sbjct: 47211 ccagagggaagggcatcgtg 47230

---

>gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome 16, complete sequence
          Length = 180261

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                      
Query: 46     aaggtcgaccaagcagcacagagatggctgctgccttctc 85
              |||||| |||||  ||||||| || |||||||||||||||
Sbjct: 111680 aaggtccaccaatgagcacagtgagggctgctgccttctc 111719

---

>gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 of 195 of the
            complete sequence
          Length = 10900

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 490  ccctgcccaacatcaagatc 509
            ||||||||||||||||||||
Sbjct: 7760 ccctgcccaacatcaagatc 7741

---

>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds
          Length = 7693

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 333 cccacgggcgacggcacccacgag 356
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome
             V, complete sequence
          Length = 130299

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 185   caaggccaacaggttcacagtcat 208
             ||||||||||||||||| ||||||
Sbjct: 13824 caaggccaacaggttcagagtcat 13847

---

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 266     cgatatctccgacgaccagc 285
               ||||||||||||||||||||
Sbjct: 4182002 cgatatctccgacgaccagc 4181983

---

>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 490     ccctgcccaacatcaagatc 509
               ||||||||||||||||||||
Sbjct: 1147720 ccctgcccaacatcaagatc 1147739

---

>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and
           coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 70  tggctgctgccttctcctcc 89
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete
              sequence
          Length = 219072

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 426    ggcttctacatcgctcctgctttc 449
              ||||||| ||||||||||||||||
Sbjct: 141825 ggcttctgcatcgctcctgctttc 141848

---

>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V,
             complete sequence
          Length = 105589

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 185   caaggccaacaggttcacagtcat 208
             ||||||||||||||||| ||||||
Sbjct: 27506 caaggccaacaggttcagagtcat 27483

---

>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence
          Length = 187148

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   aagaagctcaagaagcaggt 151
             ||||||||||||||||||||
Sbjct: 44669 aagaagctcaagaagcaggt 44650

---

>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 209755

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    tggctgctgccttctcctcc 89
             ||||||||||||||||||||
Sbjct: 46900 tggctgctgccttctcctcc 46919

---

>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds
          Length = 3727

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 70  tggctgctgccttctcctcc 89
           ||||||||||||||||||||
Sbjct: 708 tggctgctgccttctcctcc 689

---

>dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-56O15, complete
              sequences
          Length = 162128

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 46     aaggtcgaccaagcagcacagagatggctgctgccttctc 85
              |||||| |||||  ||||||| || |||||||||||||||
Sbjct: 108212 aaggtccaccaatgagcacagtgagggctgctgccttctc 108173

---

>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain
               2308
          Length = 2121359

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 490     ccctgcccaacatcaagatc 509
               ||||||||||||||||||||
Sbjct: 1144872 ccctgcccaacatcaagatc 1144891

---

>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 66     gagatggctgctgccttctcctcc 89
              ||||||||||||||||||| ||||
Sbjct: 472845 gagatggctgctgccttctgctcc 472822

---

>gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltransferase (cdsA), group 1
            outer membrane protein (omp1), LpxD (lpxD), FabZ (fabZ),
            and LpxA (lpxA) genes, complete cds
          Length = 8895

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 490  ccctgcccaacatcaagatc 509
            ||||||||||||||||||||
Sbjct: 8238 ccctgcccaacatcaagatc 8219

---

>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end
          Length = 7332

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 333 cccacgggcgacggcacccacgag 356
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2502

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 70  tggctgctgccttctcctcc 89
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,252,220
Number of Sequences: 3902068
Number of extensions: 4252220
Number of successful extensions: 79608
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 79045
Number of HSP's gapped (non-prelim): 506
length of query: 539
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 516
effective length of database: 17,143,297,704
effective search space: 8845941615264
effective search space used: 8845941615264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---