ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal19i19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108220.1| Zea mays PCO078021 mRNA sequence Length = 987 Score = 252 bits (127), Expect = 7e-64 Identities = 274/323 (84%) Strand = Plus / Plus Query: 1 ctgccgctcaagtcggcgtcggagaagttcatccggttgcgggaggtgtacaaggtgctt 60 |||||||||||| ||||||| ||||||||||||| |||| ||||||||||| ||||| Sbjct: 447 ctgccgctcaaggtggcgtcgcagaagttcatccgcctgcgagaggtgtacaacgtgctg 506 Query: 61 agcaaggaggagagccgccgcttctacgactggacgctggcgcaggaggccgagagccgt 120 ||||||||||||| || || |||||||||||||| ||||||||||||||||||||||| Sbjct: 507 agcaaggaggagacacggcggttctacgactggacactggcgcaggaggccgagagccgc 566 Query: 121 cggctgcagcagctcaggtcccgcctcgaggacccctacgagctcgacctccagaattac 180 || |||||||||||||||||| | ||||||||||| ||||||| ||| || || ||| Sbjct: 567 cgcctgcagcagctcaggtccaggctcgaggacccatacgagcaggacatcatcaactac 626 Query: 181 aagcccgtgccggacacggtcgatcgccttggcgggaagaacatggagctcagcgaccag 240 || |||||||| |||| ||| || ||||| ||||| ||||||||| |||| ||||| ||| Sbjct: 627 aaacccgtgccagacatggttgaccgcctcggcggcaagaacatgaagcttagcgatcag 686 Query: 241 gccatgaccgccctcacgttcgacatcggcatcatcatcttcagcatctgctgcatcatc 300 |||||||| || ||||| |||| |||| ||||||||| || |||||||||||||||| Sbjct: 687 gccatgactgcgctcaccatcgatatcgttatcatcatcatctccatctgctgcatcatc 746 Query: 301 tacgccatcttcttcaaggagca 323 || || | |||||||||||||| Sbjct: 747 tatgctgttttcttcaaggagca 769
>gb|AC123517.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBb0074K09, complete sequence Length = 135363 Score = 240 bits (121), Expect = 3e-60 Identities = 262/309 (84%) Strand = Plus / Minus Query: 15 ggcgtcggagaagttcatccggttgcgggaggtgtacaaggtgcttagcaaggaggagag 74 |||||||||| |||||||||| ||||||||| |||||| ||||| ||| ||||||| Sbjct: 44104 ggcgtcggagcggttcatccggctgcgggaggcgtacaacgtgctgagccgggaggagtc 44045 Query: 75 ccgccgcttctacgactggacgctggcgcaggaggccgagagccgtcggctgcagcagct 134 || || |||||||||||||||||||||||||||||||||||||| || || |||||||| Sbjct: 44044 gcggcggttctacgactggacgctggcgcaggaggccgagagccggcgcctccagcagct 43985 Query: 135 caggtcccgcctcgaggacccctacgagctcgacctccagaattacaagcccgtgccgga 194 ||||| | ||||||||||||||| ||| |||||| | | ||| || |||| || || Sbjct: 43984 gcggtccaggctcgaggacccctaccagcaggacctcgacagctaccagtccgtccccga 43925 Query: 195 cacggtcgatcgccttggcgggaagaacatggagctcagcgaccaggccatgaccgccct 254 || |||||| ||||| ||||| |||||||| ||||||||||||||||||||||| || Sbjct: 43924 catggtcgaccgcctcggcggccgcaacatggacctcagcgaccaggccatgaccgcgct 43865 Query: 255 cacgttcgacatcggcatcatcatcttcagcatctgctgcatcatctacgccatcttctt 314 ||| ||||||||||||||||||||||| || ||| |||| ||||||||||| ||||||| Sbjct: 43864 caccatcgacatcggcatcatcatcttctgcgtcttctgcctcatctacgccgtcttctt 43805 Query: 315 caaggagca 323 ||||||||| Sbjct: 43804 caaggagca 43796
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 240 bits (121), Expect = 3e-60 Identities = 262/309 (84%) Strand = Plus / Minus Query: 15 ggcgtcggagaagttcatccggttgcgggaggtgtacaaggtgcttagcaaggaggagag 74 |||||||||| |||||||||| ||||||||| |||||| ||||| ||| ||||||| Sbjct: 5988021 ggcgtcggagcggttcatccggctgcgggaggcgtacaacgtgctgagccgggaggagtc 5987962 Query: 75 ccgccgcttctacgactggacgctggcgcaggaggccgagagccgtcggctgcagcagct 134 || || |||||||||||||||||||||||||||||||||||||| || || |||||||| Sbjct: 5987961 gcggcggttctacgactggacgctggcgcaggaggccgagagccggcgcctccagcagct 5987902 Query: 135 caggtcccgcctcgaggacccctacgagctcgacctccagaattacaagcccgtgccgga 194 ||||| | ||||||||||||||| ||| |||||| | | ||| || |||| || || Sbjct: 5987901 gcggtccaggctcgaggacccctaccagcaggacctcgacagctaccagtccgtccccga 5987842 Query: 195 cacggtcgatcgccttggcgggaagaacatggagctcagcgaccaggccatgaccgccct 254 || |||||| ||||| ||||| |||||||| ||||||||||||||||||||||| || Sbjct: 5987841 catggtcgaccgcctcggcggccgcaacatggacctcagcgaccaggccatgaccgcgct 5987782 Query: 255 cacgttcgacatcggcatcatcatcttcagcatctgctgcatcatctacgccatcttctt 314 ||| ||||||||||||||||||||||| || ||| |||| ||||||||||| ||||||| Sbjct: 5987781 caccatcgacatcggcatcatcatcttctgcgtcttctgcctcatctacgccgtcttctt 5987722 Query: 315 caaggagca 323 ||||||||| Sbjct: 5987721 caaggagca 5987713
>dbj|AK059179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-F11, full insert sequence Length = 1046 Score = 240 bits (121), Expect = 3e-60 Identities = 262/309 (84%) Strand = Plus / Plus Query: 15 ggcgtcggagaagttcatccggttgcgggaggtgtacaaggtgcttagcaaggaggagag 74 |||||||||| |||||||||| ||||||||| |||||| ||||| ||| ||||||| Sbjct: 517 ggcgtcggagcggttcatccggctgcgggaggcgtacaacgtgctgagccgggaggagtc 576 Query: 75 ccgccgcttctacgactggacgctggcgcaggaggccgagagccgtcggctgcagcagct 134 || || |||||||||||||||||||||||||||||||||||||| || || |||||||| Sbjct: 577 gcggcggttctacgactggacgctggcgcaggaggccgagagccggcgcctccagcagct 636 Query: 135 caggtcccgcctcgaggacccctacgagctcgacctccagaattacaagcccgtgccgga 194 ||||| | ||||||||||||||| ||| |||||| | | ||| || |||| || || Sbjct: 637 gcggtccaggctcgaggacccctaccagcaggacctcgacagctaccagtccgtccccga 696 Query: 195 cacggtcgatcgccttggcgggaagaacatggagctcagcgaccaggccatgaccgccct 254 || |||||| ||||| ||||| |||||||| ||||||||||||||||||||||| || Sbjct: 697 catggtcgaccgcctcggcggccgcaacatggacctcagcgaccaggccatgaccgcgct 756 Query: 255 cacgttcgacatcggcatcatcatcttcagcatctgctgcatcatctacgccatcttctt 314 ||| ||||||||||||||||||||||| || ||| |||| ||||||||||| ||||||| Sbjct: 757 caccatcgacatcggcatcatcatcttctgcgtcttctgcctcatctacgccgtcttctt 816 Query: 315 caaggagca 323 ||||||||| Sbjct: 817 caaggagca 825
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 240 bits (121), Expect = 3e-60 Identities = 262/309 (84%) Strand = Plus / Minus Query: 15 ggcgtcggagaagttcatccggttgcgggaggtgtacaaggtgcttagcaaggaggagag 74 |||||||||| |||||||||| ||||||||| |||||| ||||| ||| ||||||| Sbjct: 6054498 ggcgtcggagcggttcatccggctgcgggaggcgtacaacgtgctgagccgggaggagtc 6054439 Query: 75 ccgccgcttctacgactggacgctggcgcaggaggccgagagccgtcggctgcagcagct 134 || || |||||||||||||||||||||||||||||||||||||| || || |||||||| Sbjct: 6054438 gcggcggttctacgactggacgctggcgcaggaggccgagagccggcgcctccagcagct 6054379 Query: 135 caggtcccgcctcgaggacccctacgagctcgacctccagaattacaagcccgtgccgga 194 ||||| | ||||||||||||||| ||| |||||| | | ||| || |||| || || Sbjct: 6054378 gcggtccaggctcgaggacccctaccagcaggacctcgacagctaccagtccgtccccga 6054319 Query: 195 cacggtcgatcgccttggcgggaagaacatggagctcagcgaccaggccatgaccgccct 254 || |||||| ||||| ||||| |||||||| ||||||||||||||||||||||| || Sbjct: 6054318 catggtcgaccgcctcggcggccgcaacatggacctcagcgaccaggccatgaccgcgct 6054259 Query: 255 cacgttcgacatcggcatcatcatcttcagcatctgctgcatcatctacgccatcttctt 314 ||| ||||||||||||||||||||||| || ||| |||| ||||||||||| ||||||| Sbjct: 6054258 caccatcgacatcggcatcatcatcttctgcgtcttctgcctcatctacgccgtcttctt 6054199 Query: 315 caaggagca 323 ||||||||| Sbjct: 6054198 caaggagca 6054190
>ref|XM_479752.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1164 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 261 cgacatcggcatcatcatcttc 282 |||||||||||||||||||||| Sbjct: 385 cgacatcggcatcatcatcttc 406
>gb|AY551925.1| Oryza sativa (japonica cultivar-group) MADS-box protein RMADS220 mRNA, complete cds Length = 1059 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 261 cgacatcggcatcatcatcttc 282 |||||||||||||||||||||| Sbjct: 244 cgacatcggcatcatcatcttc 265
>gb|AF463407.1| Medicago truncatula Enod8.3 (Enod8.3) gene, partial cds; and Enod8.2 (Enod8.2) and Enod8.1 (Enod8.1) genes, complete cds Length = 12707 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 attgatagaagagaagagaaga 347 |||||||||||||||||||||| Sbjct: 935 attgatagaagagaagagaaga 956
>gb|AY115556.1| Oryza sativa (indica cultivar-group) MADS-box protein FDRMADS3 mRNA, complete cds Length = 1008 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 261 cgacatcggcatcatcatcttc 282 |||||||||||||||||||||| Sbjct: 377 cgacatcggcatcatcatcttc 398
>gb|AC139354.5| Medicago truncatula clone mth1-64n13, complete sequence Length = 114031 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 326 attgatagaagagaagagaaga 347 |||||||||||||||||||||| Sbjct: 93788 attgatagaagagaagagaaga 93767
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 261 cgacatcggcatcatcatcttc 282 |||||||||||||||||||||| Sbjct: 673393 cgacatcggcatcatcatcttc 673414
>dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498H04 Length = 151046 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 261 cgacatcggcatcatcatcttc 282 |||||||||||||||||||||| Sbjct: 100771 cgacatcggcatcatcatcttc 100792
>dbj|AK069122.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004P21, full insert sequence Length = 1164 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 261 cgacatcggcatcatcatcttc 282 |||||||||||||||||||||| Sbjct: 385 cgacatcggcatcatcatcttc 406
>gb|AF141868.1|AF141868 Oryza sativa MADS-box protein mRNA, partial cds Length = 721 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 261 cgacatcggcatcatcatcttc 282 |||||||||||||||||||||| Sbjct: 90 cgacatcggcatcatcatcttc 111
>dbj|AB003326.1| Oryza sativa (japonica cultivar-group) mRNA for MADS box-like protein, complete cds, clone:R3786 Length = 1109 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 261 cgacatcggcatcatcatcttc 282 |||||||||||||||||||||| Sbjct: 353 cgacatcggcatcatcatcttc 374
>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome Length = 2401520 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 291 ctgcatcatctacgccatcttcttc 315 ||||||||||||| ||||||||||| Sbjct: 1167766 ctgcatcatctaccccatcttcttc 1167742
>ref|XM_472904.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2676 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 264 catcggcatcatcatcttcagcatctgctgcatcatc 300 ||||| ||||| |||||||| | |||||||||||||| Sbjct: 2545 catcgtcatcaccatcttcatcctctgctgcatcatc 2509
>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete sequence Length = 1019846 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 259 ttcgacatcggcatcatcatcttca 283 |||||||||||||||| |||||||| Sbjct: 292039 ttcgacatcggcatcaccatcttca 292063
>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome Length = 1827111 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 catcatcatcttcagcatctg 290 ||||||||||||||||||||| Sbjct: 1030096 catcatcatcttcagcatctg 1030116
>gb|DQ491001.1| Chlorella virus MT325 ctg_71 genomic sequence Length = 314335 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 264 catcggcatcatcatcttcagcatc 288 |||||||||||||||||||| |||| Sbjct: 275614 catcggcatcatcatcttcatcatc 275638
>gb|BT012801.1| Lycopersicon esculentum clone 113817F, mRNA sequence Length = 1606 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 272 tcatcatcttcagcatctgctgcatcatc 300 |||||||||||| |||||||| ||||||| Sbjct: 1471 tcatcatcttcaccatctgcttcatcatc 1443
>ref|XM_567656.1| Cryptococcus neoformans var. neoformans JEC21 DNA ligase (ATP) (CNK00930) partial mRNA Length = 3219 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 259 ttcgacatcggcatcatcatcttca 283 |||||||||||||||| |||||||| Sbjct: 2478 ttcgacatcggcatcaccatcttca 2454
>emb|BX032198.1|CNS08X0A Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA47DH07 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 978 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 294 catcatctacgccatcttctt 314 ||||||||||||||||||||| Sbjct: 606 catcatctacgccatcttctt 586
>emb|BX028358.1|CNS08U1M Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA42BE07 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 796 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 294 catcatctacgccatcttctt 314 ||||||||||||||||||||| Sbjct: 752 catcatctacgccatcttctt 772
>gb|AC018950.9| Homo sapiens chromosome 15, clone RP11-200K22, complete sequence Length = 159729 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 305 ccatcttcttcaaggagcaat 325 ||||||||||||||||||||| Sbjct: 89122 ccatcttcttcaaggagcaat 89102
>gb|AC093448.19| Mus musculus strain 129Sv/CJ7 clone ct7-304f1, complete sequence Length = 156382 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 catcatcttcagcatctgctg 293 ||||||||||||||||||||| Sbjct: 134591 catcatcttcagcatctgctg 134611
>emb|BX649487.7| Zebrafish DNA sequence from clone DKEY-148C4 in linkage group 9, complete sequence Length = 201933 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 278 tcttcagcatctgctgcatca 298 ||||||||||||||||||||| Sbjct: 75840 tcttcagcatctgctgcatca 75860
>dbj|AK068996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001A15, full insert sequence Length = 1208 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 264 catcggcatcatcatcttcagcatctgctgcatcatc 300 ||||| ||||| |||||||| | |||||||||||||| Sbjct: 771 catcgtcatcaccatcttcatcctctgctgcatcatc 735
>emb|AL929144.10| Mouse DNA sequence from clone RP23-441D24 on chromosome 2, complete sequence Length = 82369 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 catcatcttcagcatctgctg 293 ||||||||||||||||||||| Sbjct: 30630 catcatcttcagcatctgctg 30650
>emb|AL672082.15| Mouse DNA sequence from clone RP23-67B21 on chromosome X, complete sequence Length = 243789 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 273 catcatcttcagcatctgctg 293 ||||||||||||||||||||| Sbjct: 184580 catcatcttcagcatctgctg 184560
>ref|NM_201137.1| Danio rerio zgc:63907 (zgc:63907), mRNA Length = 1788 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 catcatcatcttcagcatct 289 |||||||||||||||||||| Sbjct: 42 catcatcatcttcagcatct 61
>ref|XM_638796.1| Dictyostelium discoideum hypothetical protein (DDB0217467), partial mRNA Length = 5517 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 catcatcatcttcagcatct 289 |||||||||||||||||||| Sbjct: 2375 catcatcatcttcagcatct 2394
>ref|XM_636480.1| Dictyostelium discoideum hypothetical protein (DDB0205957), partial mRNA Length = 1137 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 catcatcatcttcagcatct 289 |||||||||||||||||||| Sbjct: 1054 catcatcatcttcagcatct 1035
>ref|XM_630948.1| Dictyostelium discoideum hypothetical protein (DDB0219496), partial mRNA Length = 2601 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 270 catcatcatcttcagcatctgctgcatcatct 301 |||||||||||||| ||||| || |||||||| Sbjct: 626 catcatcatcttcatcatcttcttcatcatct 657
>gb|AC136702.19| Mus musculus chromosome 3, clone RP23-24N12, complete sequence Length = 209773 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 gggaagaacatggagctcag 233 |||||||||||||||||||| Sbjct: 24240 gggaagaacatggagctcag 24221
>ref|NM_204308.1| Gallus gallus amyloid beta (A4) precursor protein (peptidase nexin-II, Alzheimer disease) (APP), mRNA Length = 3081 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 262 gacatcggcatcatcatcttcagcatctgctg 293 |||||| | |||||||||||||||||| |||| Sbjct: 732 gacatctgaatcatcatcttcagcatcagctg 701
>gb|AY661566.1| Saccharopolyspora erythraea polyketide synthase gene cluster, complete sequence Length = 32299 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 cgactggacgctggcgcagg 106 |||||||||||||||||||| Sbjct: 444 cgactggacgctggcgcagg 463
>gb|AC125276.18| Mus musculus chromosome 10, clone RP24-175N4, complete sequence Length = 143671 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 catcatcatcttcagcatct 289 |||||||||||||||||||| Sbjct: 67837 catcatcatcttcagcatct 67856 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 catcatcatcttcagcatct 289 |||||||||||||||||||| Sbjct: 67801 catcatcatcttcagcatct 67820
>gb|AC007852.9| Drosophila melanogaster clone BACR33A10, complete sequence Length = 186333 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 263 acatcggcatcatcatcttcagca 286 ||||||||||||||||| |||||| Sbjct: 62740 acatcggcatcatcatcatcagca 62717
>gb|AC007588.5| Drosophila melanogaster clone BACR30O03, complete sequence Length = 165177 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 acatcggcatcatcatcttcagca 286 ||||||||||||||||| |||||| Sbjct: 9693 acatcggcatcatcatcatcagca 9716
>ref|XM_425609.1| PREDICTED: Gallus gallus LOC428045 (LOC428045), mRNA Length = 1593 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 ttcagcatctgctgcatcat 299 |||||||||||||||||||| Sbjct: 1589 ttcagcatctgctgcatcat 1570
>gb|BC053142.1| Danio rerio zgc:63907, mRNA (cDNA clone MGC:63907 IMAGE:6790266), complete cds Length = 1788 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 catcatcatcttcagcatct 289 |||||||||||||||||||| Sbjct: 42 catcatcatcttcagcatct 61
>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome Length = 1545895 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 269 gcatcatcatcttcagcatctgct 292 |||||||||||||| ||||||||| Sbjct: 685297 gcatcatcatcttctgcatctgct 685274
>ref|XM_452382.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C04147g predicted mRNA Length = 3723 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 270 catcatcatcttcagcatctgctgcatcatct 301 ||||||| |||||| ||||| ||||||||||| Sbjct: 1597 catcatcgtcttcatcatcttctgcatcatct 1566
>emb|BX927105.10| Zebrafish DNA sequence from clone DKEY-40F3 in linkage group 23, complete sequence Length = 52600 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 tcttcagcatctgctgcatc 297 |||||||||||||||||||| Sbjct: 14540 tcttcagcatctgctgcatc 14559
>gb|AC121566.3| Mus musculus BAC clone RP23-225D10 from 1, complete sequence Length = 152435 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 agaagagaagagaagatact 351 |||||||||||||||||||| Sbjct: 56666 agaagagaagagaagatact 56685
>ref|XM_722050.1| Plasmodium yoelii yoelii str. 17XNL ATPase class II type 9A (PY06483) partial mRNA Length = 4272 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 270 catcatcatcttcagcatctgctgcatcatct 301 |||||||||||||| ||||| || |||||||| Sbjct: 1060 catcatcatcttcatcatcttcttcatcatct 1029
>gb|AF289219.1| Gallus gallus beta-amyloid precursor protein 751 isoform mRNA, complete cds Length = 3081 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 262 gacatcggcatcatcatcttcagcatctgctg 293 |||||| | |||||||||||||||||| |||| Sbjct: 732 gacatctgaatcatcatcttcagcatcagctg 701
>gb|AF289218.1| Gallus gallus beta-amyloid precursor protein 695 isoform mRNA, complete cds Length = 2913 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 262 gacatcggcatcatcatcttcagcatctgctg 293 |||||| | |||||||||||||||||| |||| Sbjct: 732 gacatctgaatcatcatcttcagcatcagctg 701
>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1753957 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 270 catcatcatcttcagcatctgctgcatcatct 301 ||||||| |||||| ||||| ||||||||||| Sbjct: 379311 catcatcgtcttcatcatcttctgcatcatct 379342
>emb|BX927176.8| Zebrafish DNA sequence from clone DKEY-24E16 in linkage group 23, complete sequence Length = 81744 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 tcttcagcatctgctgcatc 297 |||||||||||||||||||| Sbjct: 14540 tcttcagcatctgctgcatc 14559
>gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig containing Eve, the hox cluster, cholinesterase, and COLP5alpha genes, complete sequence Length = 796348 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 catcggcatcatcatcttca 283 |||||||||||||||||||| Sbjct: 688282 catcggcatcatcatcttca 688301
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tcagcatctgctgcatcatc 300 |||||||||||||||||||| Sbjct: 2192001 tcagcatctgctgcatcatc 2192020
>gb|AF042098.1|AF042098 Gallus gallus amyloid precursor protein mRNA, partial cds Length = 2338 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 262 gacatcggcatcatcatcttcagcatctgctg 293 |||||| | |||||||||||||||||| |||| Sbjct: 141 gacatctgaatcatcatcttcagcatcagctg 110
>gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence Length = 333321 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 catcatcatcttcagcatct 289 |||||||||||||||||||| Sbjct: 290955 catcatcatcttcagcatct 290936
>gb|AC084644.1|CBRG45L10 Caenorhabditis briggsae cosmid G45L10, complete sequence Length = 46749 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 tgatagaagagaagagaaga 347 |||||||||||||||||||| Sbjct: 4334 tgatagaagagaagagaaga 4353
>gb|AC084585.1|CBRG41C07 Caenorhabditis briggsae cosmid G41C07, complete sequence Length = 35417 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 tgatagaagagaagagaaga 347 |||||||||||||||||||| Sbjct: 522 tgatagaagagaagagaaga 541
>gb|M63676.1|SERERYAA Saccharopolyspora erythraea EryA (eryA) gene, complete cds Length = 11219 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 cgactggacgctggcgcagg 106 |||||||||||||||||||| Sbjct: 1031 cgactggacgctggcgcagg 1050
>dbj|AB110643.1| Streptomyces thermoviolaceus stxIV, stxI genes for alpha-L-arabinofuranosidase, xylanase I complete cds Length = 3642 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 cagcatctgctgcatcatct 301 |||||||||||||||||||| Sbjct: 241 cagcatctgctgcatcatct 222
>gb|AF030341.1|AF030341 Gallus gallus amyloid protein precursor (APP) mRNA, partial cds Length = 2417 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 262 gacatcggcatcatcatcttcagcatctgctg 293 |||||| | |||||||||||||||||| |||| Sbjct: 249 gacatctgaatcatcatcttcagcatcagctg 218
>gb|AE003816.4| Drosophila melanogaster chromosome 2R, section 34 of 73 of the complete sequence Length = 287287 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 acatcggcatcatcatcttcagca 286 ||||||||||||||||| |||||| Sbjct: 267781 acatcggcatcatcatcatcagca 267804
>emb|Z48958.1|ACEG1PSEU A.caulinodans egl pseudogene Length = 6004 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 cagcatctgctgcatcatct 301 |||||||||||||||||||| Sbjct: 4236 cagcatctgctgcatcatct 4217
>emb|AL731854.18| Mouse DNA sequence from clone RP23-120A20 on chromosome 2, complete sequence Length = 208762 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 gaagagaagagaagatacta 352 |||||||||||||||||||| Sbjct: 15177 gaagagaagagaagatacta 15196 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,213,556 Number of Sequences: 3902068 Number of extensions: 3213556 Number of successful extensions: 172864 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 172577 Number of HSP's gapped (non-prelim): 282 length of query: 377 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 355 effective length of database: 17,147,199,772 effective search space: 6087255919060 effective search space used: 6087255919060 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
