>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  326 bits (835), Expect(2) = 8e-92
 Identities = 160/160 (100%), Positives = 160/160 (100%)
 Frame = +2

Query: 2   VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTF 181
           VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTF
Sbjct: 268 VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTF 327

Query: 182 PGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYG 361
           PGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYG
Sbjct: 328 PGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYG 387

Query: 362 HMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 481
           HMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG
Sbjct: 388 HMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427



 Score = 31.2 bits (69), Expect(2) = 8e-92
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +1

Query: 529 GKGAQQGTLPVPE 567
           GKGAQQGTLPVPE
Sbjct: 427 GKGAQQGTLPVPE 439

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  293 bits (750), Expect = 2e-79
 Identities = 137/160 (85%), Positives = 152/160 (95%)
 Frame = +2

Query: 2   VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTF 181
           VPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR+GVCKGIF+TDNV DE +VKIVD+F
Sbjct: 268 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSF 327

Query: 182 PGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYG 361
           PGQSIDFFGALRARVYDDEVRKWV  TG+ENIGKRLVNSR+GP  FEQPKMT+EKL+EYG
Sbjct: 328 PGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLIEYG 387

Query: 362 HMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 481
           +MLV+EQ+NVKRVQLA+ Y+S+AALGDAN DAMKTGSFYG
Sbjct: 388 YMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  293 bits (750), Expect = 2e-79
 Identities = 137/160 (85%), Positives = 152/160 (95%)
 Frame = +2

Query: 2   VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTF 181
           VPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TDNV DE+VV++VDTF
Sbjct: 265 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTF 324

Query: 182 PGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYG 361
           PGQSIDFFGALRARVYDDEVRKWVG  G+ENI KRLVNSR+GP TF+QPKMT+EKL+EYG
Sbjct: 325 PGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYG 384

Query: 362 HMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 481
           HMLVQEQ+NVKRVQLAD Y+S+AALG AN DAMKTG+FYG
Sbjct: 385 HMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  280 bits (717), Expect = 2e-75
 Identities = 130/160 (81%), Positives = 150/160 (93%)
 Frame = +2

Query: 2   VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTF 181
           VPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF++DNV+ E +VK+VDTF
Sbjct: 278 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTF 337

Query: 182 PGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYG 361
           PGQSIDFFGALRARVYDDEVRKW+   G+++IGK+LVNS++GP TFEQPKMT+EKLLEYG
Sbjct: 338 PGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYG 397

Query: 362 HMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 481
           +MLVQEQ+NVKRVQLAD Y+S+AALGDAN DAM TG+FYG
Sbjct: 398 NMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  280 bits (715), Expect = 3e-75
 Identities = 129/159 (81%), Positives = 150/159 (94%)
 Frame = +2

Query: 2   VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTF 181
           VPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TD V +E VV++VDTF
Sbjct: 274 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTF 333

Query: 182 PGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYG 361
           PGQSIDFFGALRARVYDDEVR+WV  TG+ENI ++LVNS++GP TFEQPK+T+EKLLEYG
Sbjct: 334 PGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYG 393

Query: 362 HMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 478
           HMLV EQ+NVKRVQLAD Y+++AALG+AN+DAMKTGSF+
Sbjct: 394 HMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  279 bits (713), Expect = 5e-75
 Identities = 133/158 (84%), Positives = 148/158 (93%)
 Frame = +2

Query: 2   VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTF 181
           VPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TDNV +E+V+KIVDTF
Sbjct: 282 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTF 341

Query: 182 PGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYG 361
           PGQSIDFFGALRARVYDDEVRKWV  TGIE IG +L+NS DGP TFEQPKMTVEKLLEYG
Sbjct: 342 PGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYG 401

Query: 362 HMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 475
           +MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG+F
Sbjct: 402 NMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  277 bits (709), Expect = 1e-74
 Identities = 132/156 (84%), Positives = 148/156 (94%)
 Frame = +2

Query: 2   VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTF 181
           VPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TDNV +E+VVKIVD+F
Sbjct: 277 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSF 336

Query: 182 PGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYG 361
           PGQSIDFFGALRARVYDDEVRKWV  TGIE IG++L+NSRDGP TFEQPKMT+EKLLEYG
Sbjct: 337 PGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYG 396

Query: 362 HMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 469
           +MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG
Sbjct: 397 NMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  277 bits (709), Expect = 1e-74
 Identities = 129/160 (80%), Positives = 148/160 (92%)
 Frame = +2

Query: 2   VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTF 181
           VPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TDNV+D+ +VK+VDTF
Sbjct: 278 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTF 337

Query: 182 PGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYG 361
           PGQSIDFFGALRARVY DEVRKWV   G++ IGK+LVNS++GP +FEQPKMT++KLL YG
Sbjct: 338 PGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYG 397

Query: 362 HMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 481
            MLVQEQ+NVKRVQLAD YMS+AALGDAN DA+K G+FYG
Sbjct: 398 GMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  277 bits (708), Expect = 2e-74
 Identities = 128/158 (81%), Positives = 148/158 (93%)
 Frame = +2

Query: 2   VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTF 181
           VPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TDNV +E +VK+VD F
Sbjct: 278 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQF 337

Query: 182 PGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYG 361
           PGQSIDFFGALRARVYDDEVRKWV   G++ IGK+LVNS++GP TFEQPKMT++KLL+YG
Sbjct: 338 PGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYG 397

Query: 362 HMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 475
           +MLV+EQ+NVKRVQLAD YMS+AALGDANQDA+K G+F
Sbjct: 398 NMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  273 bits (698), Expect = 3e-73
 Identities = 131/159 (82%), Positives = 143/159 (89%)
 Frame = +2

Query: 2   VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTF 181
           VPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV  E VVKIVD F
Sbjct: 282 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNF 341

Query: 182 PGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYG 361
           PGQSIDFFGALRARVYDDEVRKWV  TGIE IG +L+NS DGP TFEQPKMT+EKLLEYG
Sbjct: 342 PGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYG 401

Query: 362 HMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 478
           +MLVQEQ+NVKRVQLAD Y+ +AALGDAN DA+  GSF+
Sbjct: 402 NMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  272 bits (696), Expect = 4e-73
 Identities = 133/193 (68%), Positives = 154/193 (79%)
 Frame = +2

Query: 2   VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTF 181
           VPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TD V  E VVK+VD F
Sbjct: 276 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAF 335

Query: 182 PGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYG 361
           PGQSIDFFGALRARVY DEVRKWV S G++N+GK+LVNS+DGP  FEQP+MT++KL+EYG
Sbjct: 336 PGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYG 395

Query: 362 HMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG*KILHTHPPSLAA*EEVKEH 541
           +MLVQEQ+NVKRVQLAD YMS AALGDAN+DA+  G+F+G                 K  
Sbjct: 396 NMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG-----------------KAA 438

Query: 542 SKVLCPCRKGCTD 580
            +V  P  +GCTD
Sbjct: 439 QQVSLPVAQGCTD 451

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  270 bits (690), Expect = 2e-72
 Identities = 134/193 (69%), Positives = 153/193 (79%)
 Frame = +2

Query: 2   VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTF 181
           VPI+ TGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TD + DE +V +VD F
Sbjct: 278 VPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQF 337

Query: 182 PGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYG 361
           PGQSIDFFGALRARVYDDEVRK+V S G+E IGKRLVNSR+GP  FEQP+MT EKL+EYG
Sbjct: 338 PGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYG 397

Query: 362 HMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG*KILHTHPPSLAA*EEVKEH 541
           +MLV EQ+NVKRVQLA+TY+SQAALGDAN DA+  G+FYG                 K  
Sbjct: 398 NMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG-----------------KGA 440

Query: 542 SKVLCPCRKGCTD 580
            +V  P  +GCTD
Sbjct: 441 QQVNLPVPEGCTD 453

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  268 bits (686), Expect = 6e-72
 Identities = 121/159 (76%), Positives = 148/159 (93%)
 Frame = +2

Query: 2   VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTF 181
           VPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR+GVCKGIF+TD V +E + K+VDTF
Sbjct: 280 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTF 339

Query: 182 PGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYG 361
           PGQSIDFFGALRARVYDDEVRKW+   G++  GK+LVNS++GP TF+QPKM+++KLL+YG
Sbjct: 340 PGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYG 399

Query: 362 HMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 478
           +MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+
Sbjct: 400 NMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  260 bits (664), Expect = 2e-69
 Identities = 118/159 (74%), Positives = 146/159 (91%)
 Frame = +2

Query: 2   VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTF 181
           VPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TD V ++ +V++VD  
Sbjct: 282 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKH 341

Query: 182 PGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYG 361
           PGQSIDFFGALRARVYDDEVRKW+   G++++GK+LVNS++GP TF+QPKMT++KLL Y 
Sbjct: 342 PGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYA 401

Query: 362 HMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 478
            MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+
Sbjct: 402 SMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score =  228 bits (580), Expect = 1e-59
 Identities = 105/135 (77%), Positives = 121/135 (89%)
 Frame = +2

Query: 2   VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTF 181
           VPI+VTGNDFSTLYAPLIRDGRM+KFYWAPTR+DRIG+C GIF+TD V  E +VK+VDTF
Sbjct: 275 VPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTF 334

Query: 182 PGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYG 361
           PGQSIDFFGALRARVYDDEVRKW    G+E IG+ LVNS++ P TF+QPKMT+EKLLEYG
Sbjct: 335 PGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYG 394

Query: 362 HMLVQEQDNVKRVQL 406
           +MLV EQ+NVKRV+L
Sbjct: 395 NMLVMEQENVKRVKL 409

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score =  199 bits (507), Expect = 4e-51
 Identities = 98/145 (67%), Positives = 114/145 (78%)
 Frame = +2

Query: 2   VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTF 181
           VPIV TGNDFSTLYAPLIRDGRMEK+YW PTR+DRIGVC GIFQ DNV    V  +VDTF
Sbjct: 251 VPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTF 310

Query: 182 PGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYG 361
           PGQSIDFFGALRARVYDD VR+W+  TG++ IG++LVN+R   V   +  M +  L++YG
Sbjct: 311 PGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQ-KVAMPKVSMDLNVLIKYG 369

Query: 362 HMLVQEQDNVKRVQLADTYMSQAAL 436
             LV EQ+NVKRVQLAD Y+S A L
Sbjct: 370 KSLVDEQENVKRVQLADAYLSGAEL 394

>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score =  169 bits (429), Expect = 4e-42
 Identities = 76/139 (54%), Positives = 102/139 (73%)
 Frame = +2

Query: 2   VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTF 181
           VPI+VTGNDFSTLYAPLIRDGRMEKFYW P RD+++G+  GIF  D +S   V K+VD+F
Sbjct: 151 VPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSF 210

Query: 182 PGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYG 361
           P QSIDFF ALR+R+YD+++R ++   G EN+  R+VNS +GP  F++P  T+  L+E  
Sbjct: 211 PNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESA 270

Query: 362 HMLVQEQDNVKRVQLADTY 418
           + +V EQ  ++  QL D Y
Sbjct: 271 NFMVAEQKRIETSQLVDEY 289

>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 414

 Score =  164 bits (415), Expect = 2e-40
 Identities = 75/139 (53%), Positives = 100/139 (71%)
 Frame = +2

Query: 2   VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTF 181
           VPI+VTGNDFSTLYAPLIRDGRMEKFYW P RDD++G+  GIF  D +S   + ++VDTF
Sbjct: 151 VPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTF 210

Query: 182 PGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYG 361
           P QSIDFF ALR+R+YD ++R ++   G E I  R+VNS + P  F++P  ++  L+E G
Sbjct: 211 PKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSLAHLIESG 270

Query: 362 HMLVQEQDNVKRVQLADTY 418
           ++++ EQ  V   QL D Y
Sbjct: 271 NLVLGEQQRVDNSQLVDEY 289

>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast (RuBisCO activase) (RA) (Fragments)
          Length = 32

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 27/60 (45%), Positives = 30/60 (50%)
 Frame = +2

Query: 167 IVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 346
           +VDTFPGQSIDFFGAL                            R+GP TFEQP MT+EK
Sbjct: 1   LVDTFPGQSIDFFGAL----------------------------REGPPTFEQPAMTIEK 32

>SYL_PSESM (Q87VX3) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
            (LeuRS)
          Length = 868

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 4/146 (2%)
 Frame = -2

Query: 478  VEGTSLHRILVSITQSCLAHVGVSKLHTLDIVLLLDEHVPVXXXXXXXXXXXLEGHGPVP 299
            VEG+  HR L  + +   AHVG     +LDI  L DE   V            +  G   
Sbjct: 671  VEGS--HRFLRRVWRLAQAHVGQGASGSLDIAALTDEQKAVRRSIHQAIKQASQDIGQNQ 728

Query: 298  RVHQPLANVLDSGRADPLAHLIVVHPSTQSTEKVNGLSWEGVDDLDDRL--VTDIVGLE- 128
            + +  +A V        +  + V+  + Q+T +   L  EG++ +   L  +T  +  E 
Sbjct: 729  KFNTAVAQV--------MTLMNVLEKAPQATPQDRALLQEGLETVTLLLAPITPHISHEL 780

Query: 127  -DTLADTDTVVTGGSPVELLHTTITD 53
               L   + V+  G PV   H  + D
Sbjct: 781  WTQLGHNEPVIDAGWPVFDAHALVQD 806

>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)|
           (EF-1AO) (42S p48)
          Length = 461

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
 Frame = +2

Query: 311 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 466
           VTF    +T E K +E  H  +QE         NVK + + D      A    N   M+ 
Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337

Query: 467 GSFYG*KILHTHPPSLAA 520
           GSF    I+  HP  ++A
Sbjct: 338 GSFTAQVIILNHPGQISA 355

>LEPA_HELPY (O25122) GTP-binding protein lepA|
          Length = 602

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = +2

Query: 164 KIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVE 343
           KI+ T P  S DF   L+A +YD     ++G+         LV   DG +  EQ  + + 
Sbjct: 180 KIITTIPAPSGDFNAPLKALIYDSWFDNYLGALA-------LVRIMDGSINTEQEILVMG 232

Query: 344 KLLEYGHMLVQEQDNVKRV 400
              ++G + +   + +K++
Sbjct: 233 TGKKHGVLGLYYPNPLKKI 251

>YNEI_ECOLI (P76149) Aldehyde dehydrogenase-like protein yneI (EC 1.2.1.-)|
          Length = 462

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 250 PLAHLIVVHPSTQSTEKVNGLSWEGVDDLDDRLVTDIVGLED 125
           P  H I ++P+T   E+++ L W G DD+++ L     G  D
Sbjct: 5   PATHAISINPATG--EQLSVLPWAGADDIENALQLAAAGFRD 44

>EF1A_ONCVO (P27592) Elongation factor 1-alpha (EF-1-alpha)|
          Length = 464

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
 Frame = +2

Query: 311 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 466
           VTF    +T E K +E  H  +QE         NVK + + D      A    N  A +T
Sbjct: 278 VTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKET 337

Query: 467 GSFYG*KILHTHPPSLAA 520
             F    I+  HP  ++A
Sbjct: 338 KMFTAQVIIMNHPGQISA 355

>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor|
          Length = 1346

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 414 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 310
           + +SC+R TL    T  CP  SS +TVI+ C  ++
Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453

>PNPT1_MOUSE (Q8K1R3) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1) (Polynucleotide
           phosphorylase-like protein) (PNPase old-35) (3'-5' RNA
           exonuclease OLD35)
          Length = 783

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = -2

Query: 163 DDRLVTDIVGLEDTLADTDTVVTG---------------GSPVELLHTTITDQRSVERRE 29
           D RL+TDI+G+ED   D D  + G               G P++++   I  Q SV ++E
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAI-QQASVAKKE 584

Query: 28  IV 23
           I+
Sbjct: 585 IL 586

>LRC24_MOUSE (Q8BHA1) Leucine-rich repeat-containing protein 24 precursor|
          Length = 521

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +2

Query: 248 WVGSTGIENIGKRLVNSRDGPVT-FEQPKMTVEKLLE 355
           W+GS  I+  G+RL++SRD  +T  E P++ ++ LLE
Sbjct: 222 WLGSW-IKEGGRRLLSSRDKKITCAEPPRLALQSLLE 257

>PNPT1_PONPY (Q5RCW2) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1)
          Length = 783

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = -2

Query: 163 DDRLVTDIVGLEDTLADTDTVVTG---------------GSPVELLHTTITDQRSVERRE 29
           D RL+TDI+G+ED   D D  + G               G P++++   I  Q SV ++E
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAI-QQASVAKKE 584

Query: 28  IV 23
           I+
Sbjct: 585 IL 586

>PNPT1_HUMAN (Q8TCS8) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1) (Polynucleotide
           phosphorylase-like protein) (PNPase old-35) (3'-5' RNA
           exonuclease OLD35)
          Length = 783

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = -2

Query: 163 DDRLVTDIVGLEDTLADTDTVVTG---------------GSPVELLHTTITDQRSVERRE 29
           D RL+TDI+G+ED   D D  + G               G P++++   I  Q SV ++E
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAI-QQASVAKKE 584

Query: 28  IV 23
           I+
Sbjct: 585 IL 586

>LEPA_LEIXX (Q6AEB5) GTP-binding protein lepA|
          Length = 616

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
 Frame = -2

Query: 286 PLANVLDSGRADP------LAHLIVVHPSTQSTEKVNGLSWEGVDDLDDRLVTDI---VG 134
           P+ N +D   ADP      LA LI   P      +V+G +  GVDDL DR+V +I   VG
Sbjct: 142 PVLNKIDLPAADPDKYAAELAGLIGGKPG--DVLRVSGKTGVGVDDLLDRVVQEIPAPVG 199

Query: 133 LEDTLA 116
             D  A
Sbjct: 200 AADAPA 205

>EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF-1-alpha-S)|
          Length = 462

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
 Frame = +2

Query: 311 VTFEQPKMTVE-KLLEYGHMLVQEQD-------NVKRVQLADTYMSQAALGDANQDAMKT 466
           VTF    +T E K +E  H  + E         NVK V + D      A    N   M+ 
Sbjct: 278 VTFAPVNVTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEA 337

Query: 467 GSFYG*KILHTHPPSLAA 520
           GSF    I+  HP  + A
Sbjct: 338 GSFTAQVIILNHPGQIGA 355

>RL3_CLOPE (Q8XHS3) 50S ribosomal protein L3|
          Length = 209

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +2

Query: 140 NVSDESVVKIVDTFP-GQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVT 316
           NV DE  +K VDTF  G  +D  G  + + +   +++W  S G  + G +   +      
Sbjct: 92  NVGDE--IK-VDTFEIGDKVDVSGVSKGKGFQGTIKRWNASRGPMSHGSKFHRAPGSMGA 148

Query: 317 FEQPKMTVEKLLEYGHM 367
              P  T +     GHM
Sbjct: 149 ASDPSRTFKNKRMPGHM 165

>RPOA_ANAMM (Q5PA81) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 366

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = +2

Query: 152 ESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFE 322
           + +V  V+T    S D   A+ ARV  D+++ ++GS  +E   ++ V+  +G + ++
Sbjct: 224 DRLVISVETDGSISPDEAVAVSARVLQDQLQSFIGSEEVEGESRKKVDKEEGALPYD 280

>PTRA_SALTY (Q8ZMB5) Protease 3 precursor (EC 3.4.24.55) (Protease III)|
           (Pitrilysin) (Protease pi)
          Length = 962

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 133 LEDTLADTDTVVTGGSPVELLHTTITDQRSVERREIV 23
           +E   AD+D +V G S V  +  T+TD+    R E+V
Sbjct: 333 VEGISADSDPIVNGNSGVFAISATLTDKGLANRDEVV 369

>PTRA_SALTI (Q8Z418) Protease 3 precursor (EC 3.4.24.55) (Protease III)|
           (Pitrilysin) (Protease pi)
          Length = 962

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 133 LEDTLADTDTVVTGGSPVELLHTTITDQRSVERREIV 23
           +E   AD+D +V G S V  +  T+TD+    R E+V
Sbjct: 333 VEGISADSDPIVNGNSGVFAISATLTDKGLANRDEVV 369


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,175,411
Number of Sequences: 219361
Number of extensions: 1599821
Number of successful extensions: 5269
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 5068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5265
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)