>Y1316_MYCLE (P46509) Putative AAA-family ATPase ML1316|
          Length = 609

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +2

Query: 77  EAFVIVEASKFKRVGRKTTLRQDLANALDIRAFERTTKLGHCDVE 211
           EA  +VEA  F+ VG  +TLR+ LA+        R   +GH D E
Sbjct: 145 EALTVVEAGTFEAVGEVSTLREVLADG------HRALVVGHADEE 183

>Y2139_MYCBO (P63346) Putative AAA-family ATPase Mb2139c|
          Length = 609

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +2

Query: 77  EAFVIVEASKFKRVGRKTTLRQDLANALDIRAFERTTKLGHCDVE 211
           EA  +VEA  F+ VG  +TLR+ LA+        R   +GH D E
Sbjct: 145 EALTVVEAGTFEAVGEISTLREILADG------HRALVVGHADEE 183

>Y2115_MYCTU (P63345) Putative AAA-family ATPase Rv2115c/MT2175|
          Length = 609

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +2

Query: 77  EAFVIVEASKFKRVGRKTTLRQDLANALDIRAFERTTKLGHCDVE 211
           EA  +VEA  F+ VG  +TLR+ LA+        R   +GH D E
Sbjct: 145 EALTVVEAGTFEAVGEISTLREILADG------HRALVVGHADEE 183

>FRVR_ECOLI (P32152) Putative frv operon regulatory protein [Includes: Putative|
           phosphotransferase EIIA component (EC 2.7.1.-) (Putative
           PTS system EIIA component)]
          Length = 582

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 385 ENSFIHCLHCTLEGVWLEER*EPAKNNLKSCFP 287
           EN   H L C    VW+ E  + + NNLK+ +P
Sbjct: 274 ENITGHLLRCLAAPVWIAEHRQSSMNNLKAAWP 306

>SASA_SYNPX (Q7U871) Adaptive-response sensory-kinase sasA (EC 2.7.13.3)|
          Length = 383

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +2

Query: 134 LRQDLANALDIRAFERTTKLGHCDVELLRKEMNETDVPVSYSGTGIPEKSIRKAALE 304
           +RQ L N L+  A + T   GH  + +L +     +V V  SG GIP +  ++  L+
Sbjct: 258 MRQVLLNLLE-NALKYTGNGGHITLTMLHRTSQRVEVSVCDSGPGIPTEEQQRIFLD 313

>Y1206_METJA (Q58603) UPF0095 protein MJ1206|
          Length = 424

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +2

Query: 146 LANALDIRAFERTTKLGHCDVELLR---KEMNETDVPVSYSGTGIPEKSIRKAALEVILR 316
           L + LD+R  ++T ++G  DVEL     K + +  VP S       E SI  A LE I R
Sbjct: 40  LGDELDLRELQKTGRVGRIDVELTNINGKSIAKITVPSSLDRI---ETSILAATLETIDR 96

>AXN2_BRARE (P57095) Axin-2 (Axis inhibition protein 2)|
          Length = 812

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 31/102 (30%), Positives = 41/102 (40%)
 Frame = -2

Query: 461 QNRLEQ*WQRTSRDQRGQSQKHQGQREFFHSLPSLHPGRCLA*GKIGACEE*PQELLS*S 282
           + RL+Q  +   RD+   S          HSLP L P         G CEE PQ +L   
Sbjct: 394 EERLQQIQEEEERDESEMSSSSAS-----HSLPLLPP---------GTCEEDPQAILDEH 439

Query: 281 TSLGCPCLSTIQGHQSHSSLSSEARHHSGQALSSSRRPLYQG 156
            S     +    G QS   L      HS ++ S  +RPL +G
Sbjct: 440 LSR----VLKTPGCQSPGLL-----RHSPRSRSPEQRPLPRG 472

>TYSY_NEIMB (Q9JY72) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)|
          Length = 264

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +2

Query: 260 GTGIPEKSIRKAALEVILRRLLSFLKPDTFQGAVKAMNERILSVLDASGSGRVDLG 427
           G G P  + +K  L  I+  LL FLK DT    +K + +  +S+ D       DLG
Sbjct: 39  GKGFPLLTTKKLHLRSIIHELLWFLKGDT---NIKYLKDNNVSIWDEWADENGDLG 91

>TYSY_NEIMA (Q9JT57) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)|
          Length = 264

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +2

Query: 260 GTGIPEKSIRKAALEVILRRLLSFLKPDTFQGAVKAMNERILSVLDASGSGRVDLG 427
           G G P  + +K  L  I+  LL FLK DT    +K + +  +S+ D       DLG
Sbjct: 39  GKGFPLLTTKKLHLRSIIHELLWFLKGDT---NIKYLKDNNVSIWDEWADENGDLG 91

>MCRC_METBF (P07959) Methyl-coenzyme M reductase operon protein C|
          Length = 206

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 215 LRKEMNETDVPVSYSGTGIPEKSIR 289
           +RKE  +  V V YSG+GIPE  +R
Sbjct: 61  MRKENIQVSVLVLYSGSGIPESGMR 85

>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein|
          Length = 1509

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -2

Query: 314  EE*PQELLS*STSLGCPCLSTIQGHQ--SHSSLSSEARHHSGQ 192
            +E P E +S S SLG P  ++ +GH+   H  LSS A   S Q
Sbjct: 1144 KEKPDEYVSSSRSLGLPIAASSEGHRLPGHGPLSSSAPGASTQ 1186

>CATR_ASPNG (P55303) Catalase R (EC 1.11.1.6)|
          Length = 730

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 239 QSHSSLSSEARHHSGQALSSSRRPLYQGHWPNPDAMWSSFQPS 111
           Q H   ++  R+ SG  +  +  P +  HW  P   W+S  P+
Sbjct: 454 QGHGFFTAPYRYASGHLVRQTS-PTFNDHWSQPAMFWNSLIPA 495


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,633,158
Number of Sequences: 219361
Number of extensions: 1506643
Number of successful extensions: 4986
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4984
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)