Clone Information

BLAST Search Result

Clone Name	baal19h04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_464736.1\| Oryza sativa (japonica cultivar-group), mRNA	347	3e-92
2	dbj\|AK104878.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	347	3e-92
3	dbj\|AK066022.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	347	3e-92
4	dbj\|AK059462.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	347	3e-92
5	gb\|AC108759.2\| Oryza sativa (Japonica cultiva-group) chromosome ...	149	1e-32
6	gb\|AC137595.2\| Oryza sativa (japonica cultivar-group) chromosome...	149	1e-32
7	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	149	1e-32
8	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	141	3e-30
9	dbj\|AP005003.3\| Oryza sativa (japonica cultivar-group) genomic D...	141	3e-30
10	dbj\|AP004779.3\| Oryza sativa (japonica cultivar-group) genomic D...	141	3e-30
11	ref\|NM_187455.1\| Oryza sativa (japonica cultivar-group), predic...	84	6e-13
12	dbj\|AK101498.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	84	6e-13
13	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	64	6e-07
14	gb\|AC135205.4\| Oryza sativa (japonica cultivar-group) chromosome...	64	6e-07
15	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	64	6e-07
16	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	44	0.54
17	ref\|XM_425915.1\| PREDICTED: Gallus gallus similar to TIR domain ...	42	2.1
18	gb\|AC112943.12\| Mus musculus chromosome 16, clone RP23-424C7, co...	42	2.1
19	emb\|AL606500.8\| Human DNA sequence from clone RP11-274N19 on chr...	42	2.1
20	gb\|CP000271.1\| Burkholderia xenovorans LB400 chromosome 2, compl...	42	2.1
21	gb\|CP000248.1\| Novosphingobium aromaticivorans DSM 12444, comple...	42	2.1
22	gb\|AC155833.10\| Mus musculus 10 BAC RP24-405O10 (Roswell Park Ca...	42	2.1
23	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
24	dbj\|BA000012.4\| Mesorhizobium loti MAFF303099 DNA, complete genome	42	2.1
25	dbj\|AP003526.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
26	dbj\|AP004234.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
27	gb\|AE016958.1\| Mycobacterium avium subsp. paratuberculosis str. ...	42	2.1
28	dbj\|AP006840.1\| Symbiobacterium thermophilum IAM 14863 DNA, comp...	42	2.1
29	emb\|AL732493.17\| Mouse DNA sequence from clone RP23-358F6 on chr...	42	2.1
30	gb\|AC116896.7\| Mus musculus chromosome 8, clone RP24-531D19, com...	40	8.4
31	gb\|CP000151.1\| Burkholderia sp. 383 chromosome 1, complete sequence	40	8.4
32	gb\|AF526137.1\| Peromyscus maniculatus microsatellite BW4-164 seq...	40	8.4
33	gb\|AC142098.2\| Mus musculus BAC clone RP24-458F14 from chromosom...	40	8.4
34	gb\|AC127271.3\| Mus musculus BAC clone RP23-453G12 from chromosom...	40	8.4
35	gb\|AC124350.4\| Mus musculus BAC clone RP24-466K21 from chromosom...	40	8.4
36	emb\|AL731585.5\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	40	8.4
37	emb\|AL109920.15\|HSDJ335E1 Human DNA sequence from clone RP3-335E...	40	8.4
38	emb\|AL939118.1\|SCO939118 Streptomyces coelicolor A3(2) complete ...	40	8.4
39	emb\|AL731614.4\|OSJN00260 Oryza sativa genomic DNA, chromosome 4,...	40	8.4
40	gb\|AC116316.4\| Homo sapiens BAC clone RP11-1258N14 from 4, compl...	40	8.4
41	gb\|AC114399.2\| Homo sapiens chromosome 3 clone RP11-1019A2, comp...	40	8.4
42	gb\|AC099777.2\| Homo sapiens chromosome 3 clone RP11-332H21, comp...	40	8.4
43	gb\|CP000250.1\| Rhodopseudomonas palustris HaA2, complete genome	40	8.4
44	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
45	dbj\|AP004770.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
46	gb\|AF108134.1\|AF108134 Mus musculus ubi-d4/requiem gene, exons 2...	40	8.4
47	dbj\|AK066988.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.4
48	dbj\|AK065786.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.4
49	emb\|AM157177.1\| Suberites domuncula mRNA for collagen (coll3 gene)	40	8.4

>ref|XM_464736.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 822

 Score =  347 bits (175), Expect = 3e-92
 Identities = 277/311 (89%)
 Strand = Plus / Plus

                                                                       
Query: 295 cttccaccctctaccagatgctccagctggtccagacggaaggctggggtgggttgtaca 354
           |||||||||||| ||||||||| |||||| |||| |||||||| ||||| |||||||| |
Sbjct: 173 cttccaccctcttccagatgcttcagctgttccaaacggaaggatggggagggttgtata 232

                                                                       
Query: 355 gcggcctcaaaccctcacttattggcaccgctgcctcccagggaatctattactacttct 414
           |||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||| |
Sbjct: 233 gcggcctcaaaccctctcttattggcactgctgcttcacagggaatctattactactttt 292

                                                                       
Query: 415 accagcttctgaagaacaaggtggaagatgtggcagctgctcgtgggaaaaagggcctag 474
           ||||| |||| || ||||||||||||||| | |||| |||||| || || ||||| ||||
Sbjct: 293 accagattctcaaaaacaaggtggaagatctagcagttgctcgcggtaagaagggtctag 352

                                                                       
Query: 475 gggatggcactgttgggatgttttcttggcttgttattgcagctgttgctgggtcaatca 534
           ||||||| || ||||||||||| || ||||||| ||||||||||||||||||||||||||
Sbjct: 353 gggatggtaccgttgggatgttctcctggcttggtattgcagctgttgctgggtcaatca 412

                                                                       
Query: 535 atgttcttcttacaattccaatatgggttcttgtcacacgtatgcagacacatacgcagg 594
           ||||||||||||| | ||||||||||||||| || || |||||||||||||||||||| |
Sbjct: 413 atgttcttcttaccaatccaatatgggttctcgtgactcgtatgcagacacatacgcaag 472

                      
Query: 595 cagaaaggaag 605
           |||||| ||||
Sbjct: 473 cagaaaagaag 483



 Score =  135 bits (68), Expect = 2e-28
 Identities = 80/84 (95%)
 Strand = Plus / Plus

                                                                       
Query: 192 atcatcgcccagatcatcacataccccctccagaccgtgaacacccggcagcagacagag 251
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 67  atcatcgcccagatcatcacctaccccctccagaccgtgaacacccggcagcagacagag 126

                                   
Query: 252 aggtcagcgaagaagaagaaggcc 275
           ||||| || || ||||||||||||
Sbjct: 127 aggtcggcaaaaaagaagaaggcc 150

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>dbj|AK104878.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-E12, full
           insert sequence
          Length = 1329

 Score =  347 bits (175), Expect = 3e-92
 Identities = 277/311 (89%)
 Strand = Plus / Plus

                                                                       
Query: 295 cttccaccctctaccagatgctccagctggtccagacggaaggctggggtgggttgtaca 354
           |||||||||||| |||||||||||||||| |||| || ||||| ||||| |||||||| |
Sbjct: 297 cttccaccctcttccagatgctccagctgttccaaacagaaggatggggagggttgtata 356

                                                                       
Query: 355 gcggcctcaaaccctcacttattggcaccgctgcctcccagggaatctattactacttct 414
           ||||||| |||||||| ||||||||||||||||| || |||||||||||||||||||| |
Sbjct: 357 gcggccttaaaccctctcttattggcaccgctgcttcacagggaatctattactactttt 416

                                                                       
Query: 415 accagcttctgaagaacaaggtggaagatgtggcagctgctcgtgggaaaaagggcctag 474
           ||||| |||| || ||||||||||||||| | |||| |||||| || || ||||| ||||
Sbjct: 417 accagattctcaaaaacaaggtggaagatctagcagttgctcgcggtaagaagggtctag 476

                                                                       
Query: 475 gggatggcactgttgggatgttttcttggcttgttattgcagctgttgctgggtcaatca 534
           ||||||| |||||||||||||| || ||||||| ||||||||||||||||||||||||||
Sbjct: 477 gggatggtactgttgggatgttctcctggcttggtattgcagctgttgctgggtcaatca 536

                                                                       
Query: 535 atgttcttcttacaattccaatatgggttcttgtcacacgtatgcagacacatacgcagg 594
           ||||||||||||| | ||||||||||||||| || || ||||||||||||||||| || |
Sbjct: 537 atgttcttcttaccaatccaatatgggttctcgtgactcgtatgcagacacatacacaag 596

                      
Query: 595 cagaaaggaag 605
           |||||| ||||
Sbjct: 597 cagaaaagaag 607



 Score =  147 bits (74), Expect = 5e-32
 Identities = 116/130 (89%)
 Strand = Plus / Plus

                                                                       
Query: 146 catgtcgagcgcggtggtgaacgggctggccggcgccggcggcggtatcatcgcccagat 205
           ||||||||| |||| |||||| ||  |||| || ||||| || || ||||||||||||||
Sbjct: 145 catgtcgagtgcggcggtgaatggattggctggtgccggtggtggcatcatcgcccagat 204

                                                                       
Query: 206 catcacataccccctccagaccgtgaacacccggcagcagacagagaggtcagcgaagaa 265
           |||||| |||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct: 205 catcacctaccccctccagactgtgaacacccggcagcagacagagaggtcagcaaaaaa 264

                     
Query: 266 gaagaaggcc 275
           ||||||||||
Sbjct: 265 gaagaaggcc 274

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>dbj|AK066022.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050L01, full
           insert sequence
          Length = 1354

 Score =  347 bits (175), Expect = 3e-92
 Identities = 277/311 (89%)
 Strand = Plus / Plus

                                                                       
Query: 295 cttccaccctctaccagatgctccagctggtccagacggaaggctggggtgggttgtaca 354
           |||||||||||| |||||||||||||||| |||| || ||||| ||||| |||||||| |
Sbjct: 304 cttccaccctcttccagatgctccagctgttccaaacagaaggatggggagggttgtata 363

                                                                       
Query: 355 gcggcctcaaaccctcacttattggcaccgctgcctcccagggaatctattactacttct 414
           ||||||| |||||||| ||||||||||||||||| || |||||||||||||||||||| |
Sbjct: 364 gcggccttaaaccctctcttattggcaccgctgcttcacagggaatctattactactttt 423

                                                                       
Query: 415 accagcttctgaagaacaaggtggaagatgtggcagctgctcgtgggaaaaagggcctag 474
           ||||| |||| || ||||||||||||||| | |||| |||||| || || ||||| ||||
Sbjct: 424 accagattctcaaaaacaaggtggaagatctagcagttgctcgcggtaagaagggtctag 483

                                                                       
Query: 475 gggatggcactgttgggatgttttcttggcttgttattgcagctgttgctgggtcaatca 534
           ||||||| |||||||||||||| || ||||||| ||||||||||||||||||||||||||
Sbjct: 484 gggatggtactgttgggatgttctcctggcttggtattgcagctgttgctgggtcaatca 543

                                                                       
Query: 535 atgttcttcttacaattccaatatgggttcttgtcacacgtatgcagacacatacgcagg 594
           ||||||||||||| | ||||||||||||||| || || ||||||||||||||||| || |
Sbjct: 544 atgttcttcttaccaatccaatatgggttctcgtgactcgtatgcagacacatacacaag 603

                      
Query: 595 cagaaaggaag 605
           |||||| ||||
Sbjct: 604 cagaaaagaag 614



 Score =  147 bits (74), Expect = 5e-32
 Identities = 116/130 (89%)
 Strand = Plus / Plus

                                                                       
Query: 146 catgtcgagcgcggtggtgaacgggctggccggcgccggcggcggtatcatcgcccagat 205
           ||||||||| |||| |||||| ||  |||| || ||||| || || ||||||||||||||
Sbjct: 152 catgtcgagtgcggcggtgaatggattggctggtgccggtggtggcatcatcgcccagat 211

                                                                       
Query: 206 catcacataccccctccagaccgtgaacacccggcagcagacagagaggtcagcgaagaa 265
           |||||| |||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct: 212 catcacctaccccctccagactgtgaacacccggcagcagacagagaggtcagcaaaaaa 271

                     
Query: 266 gaagaaggcc 275
           ||||||||||
Sbjct: 272 gaagaaggcc 281

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>dbj|AK059462.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-D01, full
           insert sequence
          Length = 1400

 Score =  347 bits (175), Expect = 3e-92
 Identities = 277/311 (89%)
 Strand = Plus / Plus

                                                                       
Query: 295 cttccaccctctaccagatgctccagctggtccagacggaaggctggggtgggttgtaca 354
           |||||||||||| ||||||||| |||||| |||| |||||||| ||||| |||||||| |
Sbjct: 193 cttccaccctcttccagatgcttcagctgttccaaacggaaggatggggagggttgtata 252

                                                                       
Query: 355 gcggcctcaaaccctcacttattggcaccgctgcctcccagggaatctattactacttct 414
           |||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||| |
Sbjct: 253 gcggcctcaaaccctctcttattggcactgctgcttcacagggaatctattactactttt 312

                                                                       
Query: 415 accagcttctgaagaacaaggtggaagatgtggcagctgctcgtgggaaaaagggcctag 474
           ||||| |||| || ||||||||||||||| | |||| |||||| || || ||||| ||||
Sbjct: 313 accagattctcaaaaacaaggtggaagatctagcagttgctcgcggtaagaagggtctag 372

                                                                       
Query: 475 gggatggcactgttgggatgttttcttggcttgttattgcagctgttgctgggtcaatca 534
           ||||||| || ||||||||||| || ||||||| ||||||||||||||||||||||||||
Sbjct: 373 gggatggtaccgttgggatgttctcctggcttggtattgcagctgttgctgggtcaatca 432

                                                                       
Query: 535 atgttcttcttacaattccaatatgggttcttgtcacacgtatgcagacacatacgcagg 594
           ||||||||||||| | ||||||||||||||| || || |||||||||||||||||||| |
Sbjct: 433 atgttcttcttaccaatccaatatgggttctcgtgactcgtatgcagacacatacgcaag 492

                      
Query: 595 cagaaaggaag 605
           |||||| ||||
Sbjct: 493 cagaaaagaag 503



 Score =  135 bits (68), Expect = 2e-28
 Identities = 80/84 (95%)
 Strand = Plus / Plus

                                                                       
Query: 192 atcatcgcccagatcatcacataccccctccagaccgtgaacacccggcagcagacagag 251
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 87  atcatcgcccagatcatcacctaccccctccagaccgtgaacacccggcagcagacagag 146

                                   
Query: 252 aggtcagcgaagaagaagaaggcc 275
           ||||| || || ||||||||||||
Sbjct: 147 aggtcggcaaaaaagaagaaggcc 170

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>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
              OSJNBa0072P02, complete sequence
          Length = 157488

 Score =  149 bits (75), Expect = 1e-32
 Identities = 120/135 (88%)
 Strand = Plus / Minus

                                                                          
Query: 394    agggaatctattactacttctaccagcttctgaagaacaaggtggaagatgtggcagctg 453
              ||||||||||||||||||| |||||| |||| || ||||||||||||||| | |||| ||
Sbjct: 156461 agggaatctattactacttttaccagattctcaaaaacaaggtggaagatctagcagttg 156402

                                                                          
Query: 454    ctcgtgggaaaaagggcctaggggatggcactgttgggatgttttcttggcttgttattg 513
              |||| || || ||||| ||||||||||| |||||||||||||| || ||||||| |||||
Sbjct: 156401 ctcgcggtaagaagggtctaggggatggtactgttgggatgttctcctggcttggtattg 156342

                             
Query: 514    cagctgttgctgggt 528
              |||||||||||||||
Sbjct: 156341 cagctgttgctgggt 156327



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 46/48 (95%)
 Strand = Plus / Minus

                                                              
Query: 228    gtgaacacccggcagcagacagagaggtcagcgaagaagaagaaggcc 275
              |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 156861 gtgaacacccggcagcagacagagaggtcagcaaaaaagaagaaggcc 156814



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                          
Query: 318    cagctggtccagacggaaggctggggtgggttgtacagcggcctcaaaccctcacttatt 377
              |||||| |||| || ||||| ||||| |||||||| |||||||| |||||||| ||||||
Sbjct: 156685 cagctgttccaaacagaaggatggggagggttgtatagcggccttaaaccctctcttatt 156626

                         
Query: 378    ggcaccgctgc 388
              |||||||||||
Sbjct: 156625 ggcaccgctgc 156615



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                          
Query: 146    catgtcgagcgcggtggtgaacgggctggccggcgccggcggcggtatcatcgcccagat 205
              ||||||||| |||| |||||| ||  |||| || ||||| || || ||||||||||||||
Sbjct: 157035 catgtcgagtgcggcggtgaatggattggctggtgccggtggtggcatcatcgcccagat 156976

                                   
Query: 206    catcacataccccctccagac 226
              |||||| ||||||||||||||
Sbjct: 156975 catcacctaccccctccagac 156955



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                      
Query: 526    ggtcaatcaatgttcttcttacaattccaatatgggttcttgtcacacgtatgcag 581
              |||||||||||||||||||||| | ||||||||||||||| || || |||||||||
Sbjct: 155795 ggtcaatcaatgttcttcttaccaatccaatatgggttctcgtgactcgtatgcag 155740



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 295    cttccaccctctaccagatgctccag 320
              |||||||||||| |||||||||||||
Sbjct: 156791 cttccaccctcttccagatgctccag 156766

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>gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0094K23, complete sequence
          Length = 167482

 Score =  149 bits (75), Expect = 1e-32
 Identities = 120/135 (88%)
 Strand = Plus / Minus

                                                                         
Query: 394   agggaatctattactacttctaccagcttctgaagaacaaggtggaagatgtggcagctg 453
             ||||||||||||||||||| |||||| |||| || ||||||||||||||| | |||| ||
Sbjct: 32642 agggaatctattactacttttaccagattctcaaaaacaaggtggaagatctagcagttg 32583

                                                                         
Query: 454   ctcgtgggaaaaagggcctaggggatggcactgttgggatgttttcttggcttgttattg 513
             |||| || || ||||| ||||||||||| |||||||||||||| || ||||||| |||||
Sbjct: 32582 ctcgcggtaagaagggtctaggggatggtactgttgggatgttctcctggcttggtattg 32523

                            
Query: 514   cagctgttgctgggt 528
             |||||||||||||||
Sbjct: 32522 cagctgttgctgggt 32508



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 46/48 (95%)
 Strand = Plus / Minus

                                                             
Query: 228   gtgaacacccggcagcagacagagaggtcagcgaagaagaagaaggcc 275
             |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 33042 gtgaacacccggcagcagacagagaggtcagcaaaaaagaagaaggcc 32995



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                         
Query: 318   cagctggtccagacggaaggctggggtgggttgtacagcggcctcaaaccctcacttatt 377
             |||||| |||| || ||||| ||||| |||||||| |||||||| |||||||| ||||||
Sbjct: 32866 cagctgttccaaacagaaggatggggagggttgtatagcggccttaaaccctctcttatt 32807

                        
Query: 378   ggcaccgctgc 388
             |||||||||||
Sbjct: 32806 ggcaccgctgc 32796



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                         
Query: 146   catgtcgagcgcggtggtgaacgggctggccggcgccggcggcggtatcatcgcccagat 205
             ||||||||| |||| |||||| ||  |||| || ||||| || || ||||||||||||||
Sbjct: 33216 catgtcgagtgcggcggtgaatggattggctggtgccggtggtggcatcatcgcccagat 33157

                                  
Query: 206   catcacataccccctccagac 226
             |||||| ||||||||||||||
Sbjct: 33156 catcacctaccccctccagac 33136



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                     
Query: 526   ggtcaatcaatgttcttcttacaattccaatatgggttcttgtcacacgtatgcag 581
             |||||||||||||||||||||| | ||||||||||||||| || || |||||||||
Sbjct: 31976 ggtcaatcaatgttcttcttaccaatccaatatgggttctcgtgactcgtatgcag 31921



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 295   cttccaccctctaccagatgctccag 320
             |||||||||||| |||||||||||||
Sbjct: 32972 cttccaccctcttccagatgctccag 32947

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  149 bits (75), Expect = 1e-32
 Identities = 120/135 (88%)
 Strand = Plus / Minus

                                                                            
Query: 394      agggaatctattactacttctaccagcttctgaagaacaaggtggaagatgtggcagctg 453
                ||||||||||||||||||| |||||| |||| || ||||||||||||||| | |||| ||
Sbjct: 19437235 agggaatctattactacttttaccagattctcaaaaacaaggtggaagatctagcagttg 19437176

                                                                            
Query: 454      ctcgtgggaaaaagggcctaggggatggcactgttgggatgttttcttggcttgttattg 513
                |||| || || ||||| ||||||||||| |||||||||||||| || ||||||| |||||
Sbjct: 19437175 ctcgcggtaagaagggtctaggggatggtactgttgggatgttctcctggcttggtattg 19437116

                               
Query: 514      cagctgttgctgggt 528
                |||||||||||||||
Sbjct: 19437115 cagctgttgctgggt 19437101



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 46/48 (95%)
 Strand = Plus / Minus

                                                                
Query: 228      gtgaacacccggcagcagacagagaggtcagcgaagaagaagaaggcc 275
                |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 19437635 gtgaacacccggcagcagacagagaggtcagcaaaaaagaagaaggcc 19437588



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                            
Query: 318      cagctggtccagacggaaggctggggtgggttgtacagcggcctcaaaccctcacttatt 377
                |||||| |||| || ||||| ||||| |||||||| |||||||| |||||||| ||||||
Sbjct: 19437459 cagctgttccaaacagaaggatggggagggttgtatagcggccttaaaccctctcttatt 19437400

                           
Query: 378      ggcaccgctgc 388
                |||||||||||
Sbjct: 19437399 ggcaccgctgc 19437389



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                            
Query: 146      catgtcgagcgcggtggtgaacgggctggccggcgccggcggcggtatcatcgcccagat 205
                ||||||||| |||| |||||| ||  |||| || ||||| || || ||||||||||||||
Sbjct: 19437809 catgtcgagtgcggcggtgaatggattggctggtgccggtggtggcatcatcgcccagat 19437750

                                     
Query: 206      catcacataccccctccagac 226
                |||||| ||||||||||||||
Sbjct: 19437749 catcacctaccccctccagac 19437729



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                        
Query: 526      ggtcaatcaatgttcttcttacaattccaatatgggttcttgtcacacgtatgcag 581
                |||||||||||||||||||||| | ||||||||||||||| || || |||||||||
Sbjct: 19436569 ggtcaatcaatgttcttcttaccaatccaatatgggttctcgtgactcgtatgcag 19436514



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 295      cttccaccctctaccagatgctccag 320
                |||||||||||| |||||||||||||
Sbjct: 19437565 cttccaccctcttccagatgctccag 19437540

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  141 bits (71), Expect = 3e-30
 Identities = 119/135 (88%)
 Strand = Plus / Plus

                                                                           
Query: 394     agggaatctattactacttctaccagcttctgaagaacaaggtggaagatgtggcagctg 453
               ||||||||||||||||||| |||||| |||| || ||||||||||||||| | |||| ||
Sbjct: 7019119 agggaatctattactacttttaccagattctcaaaaacaaggtggaagatctagcagttg 7019178

                                                                           
Query: 454     ctcgtgggaaaaagggcctaggggatggcactgttgggatgttttcttggcttgttattg 513
               |||| || || ||||| ||||||||||| || ||||||||||| || ||||||| |||||
Sbjct: 7019179 ctcgcggtaagaagggtctaggggatggtaccgttgggatgttctcctggcttggtattg 7019238

                              
Query: 514     cagctgttgctgggt 528
               |||||||||||||||
Sbjct: 7019239 cagctgttgctgggt 7019253



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                           
Query: 315     ctccagctggtccagacggaaggctggggtgggttgtacagcggcctcaaaccctcactt 374
               ||||||||| |||| |||||||| ||||| |||||||| ||||||||||||||||| |||
Sbjct: 7018889 ctccagctgttccaaacggaaggatggggagggttgtatagcggcctcaaaccctctctt 7018948

                             
Query: 375     attggcaccgctgc 388
               |||||||| |||||
Sbjct: 7018949 attggcactgctgc 7018962



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                       
Query: 526     ggtcaatcaatgttcttcttacaattccaatatgggttcttgtcacacgtatgcag 581
               |||||||||||||||||||||| | ||||||||||||||| || || |||||||||
Sbjct: 7020122 ggtcaatcaatgttcttcttaccaatccaatatgggttctcgtgactcgtatgcag 7020177



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                               
Query: 228     gtgaacacccggcagcagacagagaggtcagcgaagaagaagaaggcc 275
               ||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct: 7018716 gtgaacacccggcagcagacagagaggtcggcaaaaaagaagaaggcc 7018763



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                     
Query: 192     atcatcgcccagatcatcacataccccctccagaccgt 229
               |||||||||||||||||||| |||||||||||||||||
Sbjct: 7018292 atcatcgcccagatcatcacctaccccctccagaccgt 7018329



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 408      tacttctaccagcttctgaa 427
                ||||||||||||||||||||
Sbjct: 10115149 tacttctaccagcttctgaa 10115168

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>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0495C02
          Length = 151467

 Score =  141 bits (71), Expect = 3e-30
 Identities = 119/135 (88%)
 Strand = Plus / Plus

                                                                         
Query: 394   agggaatctattactacttctaccagcttctgaagaacaaggtggaagatgtggcagctg 453
             ||||||||||||||||||| |||||| |||| || ||||||||||||||| | |||| ||
Sbjct: 22538 agggaatctattactacttttaccagattctcaaaaacaaggtggaagatctagcagttg 22597

                                                                         
Query: 454   ctcgtgggaaaaagggcctaggggatggcactgttgggatgttttcttggcttgttattg 513
             |||| || || ||||| ||||||||||| || ||||||||||| || ||||||| |||||
Sbjct: 22598 ctcgcggtaagaagggtctaggggatggtaccgttgggatgttctcctggcttggtattg 22657

                            
Query: 514   cagctgttgctgggt 528
             |||||||||||||||
Sbjct: 22658 cagctgttgctgggt 22672



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                         
Query: 315   ctccagctggtccagacggaaggctggggtgggttgtacagcggcctcaaaccctcactt 374
             ||||||||| |||| |||||||| ||||| |||||||| ||||||||||||||||| |||
Sbjct: 22308 ctccagctgttccaaacggaaggatggggagggttgtatagcggcctcaaaccctctctt 22367

                           
Query: 375   attggcaccgctgc 388
             |||||||| |||||
Sbjct: 22368 attggcactgctgc 22381



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                     
Query: 526   ggtcaatcaatgttcttcttacaattccaatatgggttcttgtcacacgtatgcag 581
             |||||||||||||||||||||| | ||||||||||||||| || || |||||||||
Sbjct: 23541 ggtcaatcaatgttcttcttaccaatccaatatgggttctcgtgactcgtatgcag 23596



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                             
Query: 228   gtgaacacccggcagcagacagagaggtcagcgaagaagaagaaggcc 275
             ||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct: 22135 gtgaacacccggcagcagacagagaggtcggcaaaaaagaagaaggcc 22182



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                   
Query: 192   atcatcgcccagatcatcacataccccctccagaccgt 229
             |||||||||||||||||||| |||||||||||||||||
Sbjct: 21711 atcatcgcccagatcatcacctaccccctccagaccgt 21748

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>dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0470A03
          Length = 133167

 Score =  141 bits (71), Expect = 3e-30
 Identities = 119/135 (88%)
 Strand = Plus / Plus

                                                                          
Query: 394    agggaatctattactacttctaccagcttctgaagaacaaggtggaagatgtggcagctg 453
              ||||||||||||||||||| |||||| |||| || ||||||||||||||| | |||| ||
Sbjct: 112741 agggaatctattactacttttaccagattctcaaaaacaaggtggaagatctagcagttg 112800

                                                                          
Query: 454    ctcgtgggaaaaagggcctaggggatggcactgttgggatgttttcttggcttgttattg 513
              |||| || || ||||| ||||||||||| || ||||||||||| || ||||||| |||||
Sbjct: 112801 ctcgcggtaagaagggtctaggggatggtaccgttgggatgttctcctggcttggtattg 112860

                             
Query: 514    cagctgttgctgggt 528
              |||||||||||||||
Sbjct: 112861 cagctgttgctgggt 112875



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                          
Query: 315    ctccagctggtccagacggaaggctggggtgggttgtacagcggcctcaaaccctcactt 374
              ||||||||| |||| |||||||| ||||| |||||||| ||||||||||||||||| |||
Sbjct: 112511 ctccagctgttccaaacggaaggatggggagggttgtatagcggcctcaaaccctctctt 112570

                            
Query: 375    attggcaccgctgc 388
              |||||||| |||||
Sbjct: 112571 attggcactgctgc 112584



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                      
Query: 526    ggtcaatcaatgttcttcttacaattccaatatgggttcttgtcacacgtatgcag 581
              |||||||||||||||||||||| | ||||||||||||||| || || |||||||||
Sbjct: 113744 ggtcaatcaatgttcttcttaccaatccaatatgggttctcgtgactcgtatgcag 113799



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                              
Query: 228    gtgaacacccggcagcagacagagaggtcagcgaagaagaagaaggcc 275
              ||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct: 112338 gtgaacacccggcagcagacagagaggtcggcaaaaaagaagaaggcc 112385



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                    
Query: 192    atcatcgcccagatcatcacataccccctccagaccgt 229
              |||||||||||||||||||| |||||||||||||||||
Sbjct: 111914 atcatcgcccagatcatcacctaccccctccagaccgt 111951

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>ref|NM_187455.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1035

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                       
Query: 174 gccggcgccggcggcggtatcatcgcccagatcatcacataccccctccagaccgtgaac 233
           ||||||||||||||||| |||||||||||| || |||| ||||| ||||| |||||||||
Sbjct: 28  gccggcgccggcggcgggatcatcgcccagctcctcacctacccgctccaaaccgtgaac 87

                         
Query: 234 acccggcagcagac 247
            | |||||||||||
Sbjct: 88  gcgcggcagcagac 101



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                       
Query: 349 tgtacagcggcctcaaaccctcacttattggcaccgctgcctcccagggaatctattact 408
           ||||| |||||||||  ||||| ||| ||||||| || |||||||||||  |||| || |
Sbjct: 188 tgtacggcggcctcatgccctcgcttgttggcactgcggcctcccagggtgtctactatt 247

                      
Query: 409 acttctaccag 419
           |||||||||||
Sbjct: 248 acttctaccag 258

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>dbj|AK101498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043H11, full
           insert sequence
          Length = 1418

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                       
Query: 174 gccggcgccggcggcggtatcatcgcccagatcatcacataccccctccagaccgtgaac 233
           ||||||||||||||||| |||||||||||| || |||| ||||| ||||| |||||||||
Sbjct: 97  gccggcgccggcggcgggatcatcgcccagctcctcacctacccgctccaaaccgtgaac 156

                         
Query: 234 acccggcagcagac 247
            | |||||||||||
Sbjct: 157 gcgcggcagcagac 170



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                       
Query: 349 tgtacagcggcctcaaaccctcacttattggcaccgctgcctcccagggaatctattact 408
           ||||| |||||||||  ||||| ||| ||||||| || |||||||||||  |||| || |
Sbjct: 257 tgtacggcggcctcatgccctcgcttgttggcactgcggcctcccagggtgtctactatt 316

                      
Query: 409 acttctaccag 419
           |||||||||||
Sbjct: 317 acttctaccag 327

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                       
Query: 174     gccggcgccggcggcggtatcatcgcccagatcatcacataccccctccagaccgt 229
               ||||||||||||||||| |||||||||||| || |||| ||||| ||||| |||||
Sbjct: 8722311 gccggcgccggcggcgggatcatcgcccagctcctcacctacccgctccaaaccgt 8722366

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>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02,
             complete sequence
          Length = 115270

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                     
Query: 174   gccggcgccggcggcggtatcatcgcccagatcatcacataccccctccagaccgt 229
             ||||||||||||||||| |||||||||||| || |||| ||||| ||||| |||||
Sbjct: 65962 gccggcgccggcggcgggatcatcgcccagctcctcacctacccgctccaaaccgt 66017

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                       
Query: 174     gccggcgccggcggcggtatcatcgcccagatcatcacataccccctccagaccgt 229
               ||||||||||||||||| |||||||||||| || |||| ||||| ||||| |||||
Sbjct: 8720146 gccggcgccggcggcgggatcatcgcccagctcctcacctacccgctccaaaccgt 8720201

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 169     ggctggccggcgccggcggcgg 190
               ||||||||||||||||||||||
Sbjct: 1950605 ggctggccggcgccggcggcgg 1950584



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 167     cgggctggccggcgccggcggcgg 190
               |||||||||||||| |||||||||
Sbjct: 3435753 cgggctggccggcggcggcggcgg 3435776

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>ref|XM_425915.1| PREDICTED: Gallus gallus similar to TIR domain containing adaptor
           inducing interferon-beta (LOC428355), mRNA
          Length = 972

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 474 ggggatggcactgttgggatg 494
           |||||||||||||||||||||
Sbjct: 715 ggggatggcactgttgggatg 695

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>gb|AC112943.12| Mus musculus chromosome 16, clone RP23-424C7, complete sequence
          Length = 219990

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 468    ggcctaggggatggcactgttggga 492
              ||||||||| |||||||||||||||
Sbjct: 208674 ggcctagggaatggcactgttggga 208650

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>emb|AL606500.8| Human DNA sequence from clone RP11-274N19 on chromosome 1 Contains the 3'
              end of the KCNN3 gene for potassium intermediate/small
              conductance calcium-activated channel, subfamily N, member
              3, a novel gene and the 5' end of the ADAR gene for
              adenosine deaminase, RNA-specific, complete sequence
          Length = 173014

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 421    ttctgaagaacaaggtggaag 441
              |||||||||||||||||||||
Sbjct: 101475 ttctgaagaacaaggtggaag 101455

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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 38      tggcgccctgtctcgcgttcg 58
               |||||||||||||||||||||
Sbjct: 1134017 tggcgccctgtctcgcgttcg 1133997

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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 148     tgtcgagcgcggtggtgaacg 168
               |||||||||||||||||||||
Sbjct: 3536860 tgtcgagcgcggtggtgaacg 3536880

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>gb|AC155833.10| Mus musculus 10 BAC RP24-405O10 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 176338

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 468    ggcctaggggatggcactgtt 488
              |||||||||||||||||||||
Sbjct: 100316 ggcctaggggatggcactgtt 100296

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 159     gtggtgaacgggctggccggc 179
               |||||||||||||||||||||
Sbjct: 1890540 gtggtgaacgggctggccggc 1890560

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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 143    ggccatgtcgagcgcggtggtgaac 167
              |||||||||| ||||||||||||||
Sbjct: 523753 ggccatgtcgcgcgcggtggtgaac 523729

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>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0548D03
          Length = 156709

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 159   gtggtgaacgggctggccggc 179
             |||||||||||||||||||||
Sbjct: 19320 gtggtgaacgggctggccggc 19340

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>dbj|AP004234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0001H02
          Length = 147160

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 159   gtggtgaacgggctggccggc 179
             |||||||||||||||||||||
Sbjct: 91018 gtggtgaacgggctggccggc 91038

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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 170     gctggccggcgccggcggcgg 190
               |||||||||||||||||||||
Sbjct: 4322800 gctggccggcgccggcggcgg 4322820

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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 170     gctggccggcgccggcggcgg 190
               |||||||||||||||||||||
Sbjct: 2490552 gctggccggcgccggcggcgg 2490532

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>emb|AL732493.17| Mouse DNA sequence from clone RP23-358F6 on chromosome 2, complete
             sequence
          Length = 195388

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 468   ggcctaggggatggcactgttggga 492
             ||||||||| |||||||||||||||
Sbjct: 99205 ggcctagggaatggcactgttggga 99229

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>gb|AC116896.7| Mus musculus chromosome 8, clone RP24-531D19, complete sequence
          Length = 163072

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 249   gagaggtcagcgaagaagaagaag 272
             ||||||| ||||||||||||||||
Sbjct: 57556 gagaggttagcgaagaagaagaag 57579

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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 151     cgagcgcggtggtgaacggg 170
               ||||||||||||||||||||
Sbjct: 2760330 cgagcgcggtggtgaacggg 2760311

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>gb|AF526137.1| Peromyscus maniculatus microsatellite BW4-164 sequence
          Length = 479

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 425 gaagaacaaggtggaagatg 444
           ||||||||||||||||||||
Sbjct: 472 gaagaacaaggtggaagatg 453

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>gb|AC142098.2| Mus musculus BAC clone RP24-458F14 from chromosome 19, complete sequence
          Length = 193811

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    actagtagcagcaaaggtcg 142
              ||||||||||||||||||||
Sbjct: 186667 actagtagcagcaaaggtcg 186686

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>gb|AC127271.3| Mus musculus BAC clone RP23-453G12 from chromosome 19, complete sequence
          Length = 191346

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    actagtagcagcaaaggtcg 142
              ||||||||||||||||||||
Sbjct: 109957 actagtagcagcaaaggtcg 109938

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>gb|AC124350.4| Mus musculus BAC clone RP24-466K21 from chromosome 8, complete sequence
          Length = 160905

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 249   gagaggtcagcgaagaagaagaag 272
             ||||||| ||||||||||||||||
Sbjct: 56817 gagaggttagcgaagaagaagaag 56794

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>emb|AL731585.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009K15,
              complete sequence
          Length = 185021

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 418    agcttctgaagaacaaggtg 437
              ||||||||||||||||||||
Sbjct: 173173 agcttctgaagaacaaggtg 173154

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>emb|AL109920.15|HSDJ335E1 Human DNA sequence from clone RP3-335E1 on chromosome 6q16.2-21
             Contains a CpG island, complete sequence
          Length = 143805

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   ttttcttggcttgttattgc 514
             ||||||||||||||||||||
Sbjct: 66328 ttttcttggcttgttattgc 66309

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>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29
          Length = 303550

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     gtgggcgcctcggccggctg 96
              ||||||||||||||||||||
Sbjct: 121490 gtgggcgcctcggccggctg 121471

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>emb|AL731614.4|OSJN00260 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079F16,
             complete sequence
          Length = 157801

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 418   agcttctgaagaacaaggtg 437
             ||||||||||||||||||||
Sbjct: 19008 agcttctgaagaacaaggtg 18989

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>gb|AC116316.4| Homo sapiens BAC clone RP11-1258N14 from 4, complete sequence
          Length = 130364

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   atcatcgcccagatcatcac 211
             ||||||||||||||||||||
Sbjct: 15817 atcatcgcccagatcatcac 15798

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>gb|AC114399.2| Homo sapiens chromosome 3 clone RP11-1019A2, complete sequence
          Length = 180948

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   agacggaaggctggggtggg 347
             ||||||||||||||||||||
Sbjct: 47476 agacggaaggctggggtggg 47495

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>gb|AC099777.2| Homo sapiens chromosome 3 clone RP11-332H21, complete sequence
          Length = 206537

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 328  agacggaaggctggggtggg 347
            ||||||||||||||||||||
Sbjct: 1462 agacggaaggctggggtggg 1443

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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 171     ctggccggcgccggcggcgg 190
               ||||||||||||||||||||
Sbjct: 1909516 ctggccggcgccggcggcgg 1909497

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 418      agcttctgaagaacaaggtg 437
                ||||||||||||||||||||
Sbjct: 11850413 agcttctgaagaacaaggtg 11850394

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>dbj|AP004770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0017G06
          Length = 150628

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 408   tacttctaccagcttctgaa 427
             ||||||||||||||||||||
Sbjct: 62843 tacttctaccagcttctgaa 62862

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>gb|AF108134.1|AF108134 Mus musculus ubi-d4/requiem gene, exons 2 through 11 and partial cds
          Length = 10939

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 123  actagtagcagcaaaggtcg 142
            ||||||||||||||||||||
Sbjct: 6916 actagtagcagcaaaggtcg 6897

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>dbj|AK066988.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093O18, full
            insert sequence
          Length = 3644

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 418  agcttctgaagaacaaggtg 437
            ||||||||||||||||||||
Sbjct: 3571 agcttctgaagaacaaggtg 3552

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>dbj|AK065786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013039J24, full
            insert sequence
          Length = 3814

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 418  agcttctgaagaacaaggtg 437
            ||||||||||||||||||||
Sbjct: 3746 agcttctgaagaacaaggtg 3727

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>emb|AM157177.1| Suberites domuncula mRNA for collagen (coll3 gene)
          Length = 1322

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 305 ctaccagatgctccagctggtcca 328
           |||||||||| |||||||||||||
Sbjct: 327 ctaccagatggtccagctggtcca 304


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,885,618
Number of Sequences: 3902068
Number of extensions: 5885618
Number of successful extensions: 134247
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 132333
Number of HSP's gapped (non-prelim): 1914
length of query: 615
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 592
effective length of database: 17,143,297,704
effective search space: 10148832240768
effective search space used: 10148832240768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result