ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal19h03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor 43 2e-04
2ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP) 40 0.001
3SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized ... 39 0.004
4SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized ... 38 0.006
5YAG3_SCHPO (Q09868) Hypothetical RNA-binding protein C12G12.03 i... 38 0.006
6IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 R... 38 0.008
7ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec... 37 0.013
8ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor 37 0.017
9NUCL_RAT (P13383) Nucleolin (Protein C23) 36 0.029
10NUCL_MOUSE (P09405) Nucleolin (Protein C23) 36 0.029
11NUCL_MESAU (P08199) Nucleolin (Protein C23) 36 0.029
12SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized ... 36 0.029
13ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precur... 36 0.029
14ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur... 35 0.049
15RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-bindin... 35 0.064
16RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-bindin... 34 0.083
17MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phos... 34 0.083
18GAR2_SCHPO (P41891) Protein gar2 34 0.083
19ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloro... 34 0.083
20PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-... 34 0.11
21PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-bi... 33 0.14
22IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H ... 33 0.14
23PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-bi... 33 0.14
24PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-bind... 33 0.19
25PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-bi... 33 0.19
26PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-bi... 33 0.19
27PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-bi... 33 0.19
28IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H ... 33 0.24
29SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pr... 33 0.24
30SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-... 33 0.24
31YBF1_YEAST (P34217) Hypothetical 73.8 kDa protein in SAS3-SEC17 ... 33 0.24
32ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimula... 32 0.32
33HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (h... 32 0.32
34RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C... 32 0.32
35HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 ... 32 0.32
36HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 ... 32 0.32
37MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phos... 32 0.32
38RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch... 32 0.41
39PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-bindi... 32 0.54
40SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pr... 32 0.54
41ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B ... 31 0.71
42MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musash... 31 0.71
43MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musa... 31 0.71
44MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musa... 31 0.71
45HNRH2_MOUSE (P70333) Heterogeneous nuclear ribonucleoprotein H' ... 31 0.71
46HNRH2_HUMAN (P55795) Heterogeneous nuclear ribonucleoprotein H' ... 31 0.71
47ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B ... 31 0.71
48RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15 31 0.71
49HNRH1_MOUSE (O35737) Heterogeneous nuclear ribonucleoprotein H (... 31 0.71
50HNRH1_HUMAN (P31943) Heterogeneous nuclear ribonucleoprotein H (... 31 0.71
51SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nucl... 31 0.92
52ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimu... 31 0.92
53RDRP_PMV (P20951) RNA replication protein (176 kDa protein) (ORF... 31 0.92
54YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 i... 31 0.92
55MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phos... 31 0.92
56SCE3_SCHPO (O14369) Probable RNA-binding protein sce3 31 0.92
57ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precur... 31 0.92
58MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musa... 30 1.2
59ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimu... 30 1.2
60MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musa... 30 1.2
61Y1437_PASMU (Q9CL11) Hypothetical protein PM1437 30 1.6
62ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hn... 30 1.6
63ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (... 30 1.6
64NUCL_HUMAN (P19338) Nucleolin (Protein C23) 30 1.6
65ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (... 30 1.6
66NUCL_PONPY (Q5RF26) Nucleolin 30 1.6
67YO25_CAEEL (P34675) Hypothetical protein ZK688.5 30 1.6
68NUCL_MACFA (Q4R4J7) Nucleolin 30 1.6
69PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b... 30 1.6
70ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, ... 30 1.6
71ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimu... 30 2.1
72MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phos... 30 2.1
73HNRPF_MACFA (Q60HC3) Heterogeneous nuclear ribonucleoprotein F (... 30 2.1
74HNRPF_HUMAN (P52597) Heterogeneous nuclear ribonucleoprotein F (... 30 2.1
75ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalo... 29 2.7
76LA_HUMAN (P05455) Lupus La protein (Sjoegren syndrome type B ant... 29 2.7
77MODU_DROME (P13469) DNA-binding protein modulo 29 2.7
78ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encepha... 29 2.7
79ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encepha... 29 2.7
80ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB) 29 2.7
81ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2 29 2.7
82ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (E... 29 2.7
83ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (E... 29 2.7
84GATA_SULTO (Q971U6) Glutamyl-tRNA(Gln) amidotransferase subunit ... 29 3.5
85SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pr... 29 3.5
86CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1 29 3.5
87ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visu... 29 3.5
88IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B ... 29 3.5
89ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visu... 29 3.5
90SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a... 29 3.5
91SSB1_YEAST (P10080) Single-stranded nucleic acid-binding protein 29 3.5
92K0226_MOUSE (Q80U62) Protein KIAA0226 29 3.5
93SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9 29 3.5
94SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pr... 29 3.5
95ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 ... 28 4.6
96SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9 28 4.6
97RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA 28 4.6
98VL1_BPV2 (P06458) Major capsid protein L1 28 6.0
99RNP24_SCHPO (Q09100) RNA-binding protein rnp24 28 6.0
100IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B ... 28 6.0
101HOME2_MOUSE (Q9QWW1) Homer protein homolog 2 (Homer-2) (Cupidin)... 28 6.0
102UGT46_CAEEL (Q10941) Putative UDP-glucuronosyltransferase ugt-46... 28 6.0
103PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein 28 6.0
104TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein 28 7.8
105RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif p... 28 7.8
106ATC5_YEAST (P32660) Probable phospholipid-transporting ATPase DN... 28 7.8
107RL16_CAMJR (Q5HS97) 50S ribosomal protein L16 28 7.8
108RL16_CAMJE (Q9PLX8) 50S ribosomal protein L16 28 7.8 
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor|
          Length = 324

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
 Frame = +1

Query: 31  RGLAFVTFESDEVALKSLEL-DGYKIGNRFMRVERCRITASSKRQK-----KTEFQSDPE 192
           RG AFVT  S E A +++ L DG ++G R ++V    +    +R+      ++ +Q   +
Sbjct: 155 RGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVD 214

Query: 193 KPDGCLSAYVGNLSWNISEKDLRDFF 270
            P      YV NLSW ++ + LRD F
Sbjct: 215 SPH---KLYVANLSWALTSQGLRDAF 237
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>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)|
          Length = 233

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +1

Query: 31  RGLAFVTFESDEVALKSLEL-DGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 207
           RG  FVT  + E A K++EL +GY +  R + V +     S +R  + +F+         
Sbjct: 96  RGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPS------- 148

Query: 208 LSAYVGNLSWNISEKDLRDFF 270
              YVGNL W++    L   F
Sbjct: 149 CRVYVGNLPWDVDTSRLEQLF 169
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>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3|
           (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa)
           (Tip110)
          Length = 963

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 22/89 (24%), Positives = 46/89 (51%)
 Frame = +1

Query: 10  FPDSGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDP 189
           F + G+FRG  +V F+ ++ AL++LE+D   +  R M V  C   + +   K   + +  
Sbjct: 739 FSNRGDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSL 798

Query: 190 EKPDGCLSAYVGNLSWNISEKDLRDFFKS 276
           EK       ++  L ++ ++++L +  K+
Sbjct: 799 EKH----KLFISGLPFSCTKEELEEICKA 823
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>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3|
            (SART-3)
          Length = 981

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 22/89 (24%), Positives = 46/89 (51%)
 Frame = +1

Query: 10   FPDSGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDP 189
            F + G+FRG  +V F+ ++ AL++LE+D   +  R M V  C   + +   K   + +  
Sbjct: 757  FSNRGDFRGYRYVEFKEEKSALQALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSL 816

Query: 190  EKPDGCLSAYVGNLSWNISEKDLRDFFKS 276
            EK       ++  L ++ ++++L +  K+
Sbjct: 817  EKH----KLFISGLPFSCTKEELEEICKA 841
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>YAG3_SCHPO (Q09868) Hypothetical RNA-binding protein C12G12.03 in chromosome I|
          Length = 576

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
 Frame = +1

Query: 16  DSGNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQK----KTEFQ 180
           D+G FRGLAF  F S E A   ++ L+GY+I  R +RVE  R    ++R++    K E +
Sbjct: 268 DNGVFRGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPPAERERVERGKQEKR 327

Query: 181 SDPEKPDGCLSAY-VGNLSWNISEKDLRD 264
           +  E+ +   S + V N+   I + DL D
Sbjct: 328 AVEERKNQLKSPFSVANIGAGI-DFDLND 355
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>IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 RNA-binding|
           subunit (eIF-3 RNA-binding subunit) (eIF3 p33)
           (Translation initiation factor eIF3, p33 subunit)
          Length = 274

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +1

Query: 7   RFPDSGNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVE 129
           R  ++G  RGLAFVTF S+EVA ++L  LDG    N  +RVE
Sbjct: 225 RNKETGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLILRVE 266
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>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score = 37.0 bits (84), Expect = 0.013
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
 Frame = +1

Query: 19  SGNFRGLAFVTFES-DEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEK 195
           +G  RG  FVT  S +EV     + +GY++  R +RV         ++++ + F+     
Sbjct: 124 TGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNS---GPPPEKRENSSFRGGSRG 180

Query: 196 P---DGCLSAYVGNLSWNISEKDLRDFF 270
               D     YVGNL+W + +  L   F
Sbjct: 181 GGSFDSSNRVYVGNLAWGVDQDALETLF 208



 Score = 31.6 bits (70), Expect = 0.54
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 16  DSGNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMRV 126
           DSG  RG  FVT+ S E    ++E LDG  +  R +RV
Sbjct: 224 DSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261
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>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 36.6 bits (83), Expect = 0.017
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = +1

Query: 16  DSGNFRGLAFVTFESDEVALKSLEL-DGYKIGNRFMRVERCRITASSKRQKKTEFQSDPE 192
           D+   RG  FVT  + E A K++E+ + Y +  R + V +     +++R ++ E    P 
Sbjct: 172 DTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNK-----AARRGERPE--RPPR 224

Query: 193 KPDGCLSAYVGNLSWNISEKDLRDFF 270
             +     YVGN+ W I +  L   F
Sbjct: 225 TFEQSYRIYVGNIPWGIDDARLEQLF 250
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>NUCL_RAT (P13383) Nucleolin (Protein C23)|
          Length = 712

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 24/87 (27%), Positives = 42/87 (48%)
 Frame = +1

Query: 19  SGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP 198
           +G  R   +V FES E   K+LEL G K+    +++E+ +               D +K 
Sbjct: 346 TGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK-------------GRDSKKV 392

Query: 199 DGCLSAYVGNLSWNISEKDLRDFFKSS 279
               +    NLS+NI+E +L++ F+ +
Sbjct: 393 RAARTLLAKNLSFNITEDELKEVFEDA 419
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>NUCL_MOUSE (P09405) Nucleolin (Protein C23)|
          Length = 706

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 24/87 (27%), Positives = 42/87 (48%)
 Frame = +1

Query: 19  SGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP 198
           +G  R   +V FES E   K+LEL G K+    +++E+ +               D +K 
Sbjct: 344 TGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK-------------GRDSKKV 390

Query: 199 DGCLSAYVGNLSWNISEKDLRDFFKSS 279
               +    NLS+NI+E +L++ F+ +
Sbjct: 391 RAARTLLAKNLSFNITEDELKEVFEDA 417
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>NUCL_MESAU (P08199) Nucleolin (Protein C23)|
          Length = 713

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 24/87 (27%), Positives = 42/87 (48%)
 Frame = +1

Query: 19  SGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP 198
           +G  R   +V FES E   K+LEL G K+    +++E+ +               D +K 
Sbjct: 343 TGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK-------------GRDSKKV 389

Query: 199 DGCLSAYVGNLSWNISEKDLRDFFKSS 279
               +    NLS+NI+E +L++ F+ +
Sbjct: 390 RAARTLLAKNLSFNITEDELKEVFEDA 416
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>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3|
           (SART-3) (mSART-3) (Tumor-rejection antigen SART3)
          Length = 962

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 23/89 (25%), Positives = 44/89 (49%)
 Frame = +1

Query: 10  FPDSGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDP 189
           F + G+FRG  +V F  ++ A ++LELD   +  R M V  C   + +   K   + +  
Sbjct: 739 FSNRGDFRGYCYVEFGEEKSAQQALELDRKIVEGRPMFVSPCVDKSKNPDFKVFRYSTTL 798

Query: 190 EKPDGCLSAYVGNLSWNISEKDLRDFFKS 276
           EK       ++  L ++ ++++L D  K+
Sbjct: 799 EKH----KLFISGLPFSCTKEELEDICKA 823
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>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)|
          Length = 279

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
 Frame = +1

Query: 19  SGNFRGLAFVTFES-DEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEK 195
           +G  RG  FVT  S +EV     + +GY++  R +RV       S    +K E  S  E 
Sbjct: 124 TGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN------SGPPPEKRENSSFREN 177

Query: 196 P------------DGCLSAYVGNLSWNISEKDLRDFF 270
                        D     YVGNL+W + +  L   F
Sbjct: 178 SSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLF 214



 Score = 31.6 bits (70), Expect = 0.54
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 16  DSGNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMRV 126
           DSG  RG  FVT+ S E    ++E LDG  +  R +RV
Sbjct: 230 DSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267
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>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score = 35.0 bits (79), Expect = 0.049
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +1

Query: 31  RGLAFVTFESDEVALKSLEL-DGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 207
           RG  FVT  + E A K++EL   Y +  R + V +     S   +    FQ         
Sbjct: 138 RGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPT------- 190

Query: 208 LSAYVGNLSWNISEKDLRDFF 270
              YVGN+ W+I +  L   F
Sbjct: 191 YRIYVGNIPWDIDDARLEQVF 211
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>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 952

 Score = 34.7 bits (78), Expect = 0.064
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
 Frame = +1

Query: 22  GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRV--ERCRITASSKRQKKTEFQS---- 183
           GN  G  FV   S+E   K+L+ +   +G R++ V  E+   TA    +  T +Q     
Sbjct: 329 GNKTGYVFVDLSSEEEVKKALKCNRDYMGGRYIEVFREKQAPTARGPPKSTTPWQGRTLG 388

Query: 184 -DPEKPDGCLSA--YVGNLSWNISEKDLRDFFKS 276
            + E+ D   S   +V NLS+  SE+DL   F +
Sbjct: 389 ENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSA 422
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>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein|
           23) (RNA-binding region-containing protein 4) (Splicing
           factor SF2)
          Length = 439

 Score = 34.3 bits (77), Expect = 0.083
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +1

Query: 1   LSRFPDSGNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMRV 126
           L +  D+G  +G  F+TF   E A ++LE L+G+++  R MRV
Sbjct: 294 LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 336
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>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein|
           (Nucleolar protein interacting with the FHA domain of
           pKI-67) (mNIFK)
          Length = 317

 Score = 34.3 bits (77), Expect = 0.083
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +1

Query: 1   LSRFPDSGNFRGLAFVTFESDEVA-LKSLELDGYKIGNRFM 120
           LSR   +GN +G AFV FES++VA + +  +D Y  G R +
Sbjct: 78  LSRSKRTGNSKGYAFVEFESEDVAKIVAETMDNYLFGERLL 118
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>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 34.3 bits (77), Expect = 0.083
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
 Frame = +1

Query: 19  SGNFRGLAFVTFESDEVALKSLELDGYK-IGNRFMRVERCRITASSKR----QKKTEFQS 183
           SG  +G  +V FE+ E A  ++  +G K I  R + ++      ++ +    Q+   F  
Sbjct: 300 SGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGD 359

Query: 184 DPEKPDGCLSAYVGNLSWNISEKDLRDFF 270
              +P    + +VGNLS+N +E DL   F
Sbjct: 360 QLSEPSD--TVFVGNLSFNATEDDLSTAF 386
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>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score = 34.3 bits (77), Expect = 0.083
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 17/101 (16%)
 Frame = +1

Query: 19  SGNFRGLAFVTFES-DEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEK 195
           +G  RG  FVT  S  EV   + + +GY++  R +RV           +++  F   P  
Sbjct: 128 TGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN----AGPPPPKREDGFSRGPRS 183

Query: 196 PDGCLSA----------------YVGNLSWNISEKDLRDFF 270
             G   +                YVGNLSW + +  L   F
Sbjct: 184 SFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLF 224



 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 16  DSGNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMRV 126
           DSG  +G  FVT++S +    +++ LDG  +  R +RV
Sbjct: 240 DSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRV 277
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>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein|
           1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A)
           (PABP 1-A) (xPABP1-A)
          Length = 633

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
 Frame = +1

Query: 16  DSGNFRGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQ---S 183
           D+G  +G  FV+FE  E A K++ E++G  +  + M V R +     + + K +F+    
Sbjct: 226 DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQ 285

Query: 184 DPEKPDGCLSAYVGNLSWNISEKDLRDFF 270
           D       ++ YV NL   I ++ LR  F
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEF 314
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>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein|
           4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP)
           (Activated-platelet protein 1) (APP-1)
          Length = 644

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
 Frame = +1

Query: 16  DSGNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPE 192
           D    +G AFV FE+ E A K++E ++G  + +R + V R +    S+++++ E  +   
Sbjct: 133 DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK----SRKEREAELGA--- 185

Query: 193 KPDGCLSAYVGNLSWNISEKDLRDFF 270
           K     + Y+ N    + ++ L++ F
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELF 211
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>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)|
           (Williams-Beuren syndrome chromosome region 1 protein)
          Length = 247

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
 Frame = +1

Query: 1   LSRFPDSGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQ 180
           L R  D+  F+G  +V F+  +   ++L  DG  +G+R +RV+     A  ++Q K  F 
Sbjct: 71  LVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVD----IAEGRKQDKGGFG 126

Query: 181 SDPEKPD--GCLSAYVGNLSWNISEKDLRDFFKS 276
                PD  G  S+      W     D RD F S
Sbjct: 127 FRKGGPDDRGMGSSRESRGGW-----DSRDDFNS 155
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>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3) (Testis-specific poly(A)-binding protein)
          Length = 631

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
 Frame = +1

Query: 16  DSGNFRGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQ---S 183
           +SG  +G  FV+FE  E A K++ E++G ++  + + V R +     + + K  F+    
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQ 285

Query: 184 DPEKPDGCLSAYVGNLSWNISEKDLRDFF 270
           D       ++ YV NL   I ++ LR  F
Sbjct: 286 DRITRYQVVNLYVKNLDDGIDDERLRKAF 314
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>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
 Frame = +1

Query: 16  DSGNFRGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQ---S 183
           +SG  +G  FV+FE  E A K++ E++G ++  + + V R +     + + K +F+    
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285

Query: 184 DPEKPDGCLSAYVGNLSWNISEKDLRDFF 270
           D       ++ YV NL   I ++ LR  F
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEF 314
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>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
 Frame = +1

Query: 16  DSGNFRGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQ---S 183
           +SG  +G  FV+FE  E A K++ E++G ++  + + V R +     + + K +F+    
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285

Query: 184 DPEKPDGCLSAYVGNLSWNISEKDLRDFF 270
           D       ++ YV NL   I ++ LR  F
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEF 314
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>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
 Frame = +1

Query: 16  DSGNFRGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQ---S 183
           +SG  +G  FV+FE  E A K++ E++G ++  + + V R +     + + K +F+    
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285

Query: 184 DPEKPDGCLSAYVGNLSWNISEKDLRDFF 270
           D       ++ YV NL   I ++ LR  F
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEF 314
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>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
 Frame = +1

Query: 16  DSGNFRGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQ---S 183
           +SG  +G  FV+FE  E A K++ E++G ++  + + V R +     + + K +F+    
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285

Query: 184 DPEKPDGCLSAYVGNLSWNISEKDLRDFF 270
           D       ++ YV NL   I ++ LR  F
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEF 314
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>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)|
           (Williams-Beuren syndrome chromosome region 1 protein
           homolog)
          Length = 247

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +1

Query: 1   LSRFPDSGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQ 180
           L R  D+  F+G  +V F+  +   ++L  DG  +G+R +RV+     A  ++Q K  F 
Sbjct: 71  LVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVD----IAEGRKQDKGGFG 126

Query: 181 SDPEKPD 201
                PD
Sbjct: 127 FRKGGPD 133
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>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing|
           factor SRP40) (Delayed-early protein HRS)
          Length = 272

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 14/97 (14%)
 Frame = +1

Query: 31  RGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITA-------------SSKRQKK 168
           RG  FV FE    A  ++ ELDG ++ +  + +E  R  +             SS+R + 
Sbjct: 37  RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRN 96

Query: 169 TEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSS 279
               + P + +  L   V NLS  +S +DL+DF + +
Sbjct: 97  DRRNAPPVRTENRL--IVENLSSRVSWQDLKDFMRQA 131
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>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing|
           factor SRP40) (Insulin-induced growth response protein
           CL-4) (Delayed-early protein HRS)
          Length = 269

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 14/97 (14%)
 Frame = +1

Query: 31  RGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITA-------------SSKRQKK 168
           RG  FV FE    A  ++ ELDG ++ +  + +E  R  +             SS+R + 
Sbjct: 37  RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRN 96

Query: 169 TEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSS 279
               + P + +  L   V NLS  +S +DL+DF + +
Sbjct: 97  DRRNAPPVRTENRL--IVENLSSRVSWQDLKDFMRQA 131
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>YBF1_YEAST (P34217) Hypothetical 73.8 kDa protein in SAS3-SEC17 intergenic|
           region
          Length = 668

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 16  DSGNFRGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQK 165
           D+G FRGLAF  F + E   + +  L+G +I  R ++VE  ++   ++R++
Sbjct: 121 DNGIFRGLAFANFTTPEETTQVITSLNGKEISGRKLKVEYKKMLPQAERER 171
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>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
 Frame = +1

Query: 19  SGNFRGLAFVTFESDEVALKSL-ELDGYKIGNRFM-----RVERCRITASS--KRQKKTE 174
           +GN RG AFVTF + + A  ++ +L+ Y+I N  +      V+ CR+      K +K+ E
Sbjct: 92  NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151

Query: 175 FQSDPEK 195
             S+ +K
Sbjct: 152 ILSEMKK 158
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>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 353

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
 Frame = +1

Query: 127 ERCRITASSKRQKKTEFQSDPEKPDGCLSA------YVGNLSWNISEKDLRDFF 270
           E  +I AS   + +    S P   +   +       ++G LSW+ ++KDL+D+F
Sbjct: 62  EGAKIDASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYF 115
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>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)|
           (hnRNP 48) (HRP48.1)
          Length = 421

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 23/85 (27%), Positives = 34/85 (40%)
 Frame = +1

Query: 16  DSGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEK 195
           +SG  RG  FVTF         L+   + +  R +  + C      K +K          
Sbjct: 43  ESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTIDPKPCNPRTLQKPKK---------- 92

Query: 196 PDGCLSAYVGNLSWNISEKDLRDFF 270
             G    ++G L  N++E DLR FF
Sbjct: 93  -GGGYKVFLGGLPSNVTETDLRTFF 116
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>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
 Frame = +1

Query: 127 ERCRITASSKRQKKTEFQSDPEKPDGCLSA------YVGNLSWNISEKDLRDFF 270
           E  +I AS   + +    S P   +   +       ++G LSW+ ++KDL+D+F
Sbjct: 64  EGAKIDASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYF 117
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>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
 Frame = +1

Query: 127 ERCRITASSKRQKKTEFQSDPEKPDGCLSA------YVGNLSWNISEKDLRDFF 270
           E  +I AS   + +    S P   +   +       ++G LSW+ ++KDL+D+F
Sbjct: 64  EGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYF 117
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>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein|
           (Nucleolar protein interacting with the FHA domain of
           pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34)
          Length = 293

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +1

Query: 1   LSRFPDSGNFRGLAFVTFESDEVA-LKSLELDGYKIGNRFM 120
           LSR   +GN +G AFV FES++VA + +  ++ Y  G R +
Sbjct: 76  LSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLL 116
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>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
 Frame = +1

Query: 19  SGNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCR-----ITASSKRQKKTEFQ 180
           SG  R   FVT ++ E A   +E L+  +IG R ++V         +  ++ + + ++F 
Sbjct: 121 SGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFV 180

Query: 181 SDPEKPDGCLSAYVGNLSWNISEKDLRDFF 270
             P K       Y+GNL+  ++ + L+DFF
Sbjct: 181 ESPYK------VYIGNLAKTVTNELLKDFF 204
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>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 634

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 20/86 (23%), Positives = 43/86 (50%)
 Frame = +1

Query: 16  DSGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEK 195
           + GN +G  FV FE++E A  S++    K+    +  ++  +     R+++ +     EK
Sbjct: 125 EKGNSKGYGFVHFETEEAANTSID----KVNGMLLNGKKVYVGKFIPRKEREKELG--EK 178

Query: 196 PDGCLSAYVGNLSWNISEKDLRDFFK 273
                + YV N + +  ++ L++FF+
Sbjct: 179 AKLFTNVYVKNFTEDFDDEKLKEFFE 204
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>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing|
           factor SRP40) (Delayed-early protein HRS)
          Length = 270

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
 Frame = +1

Query: 31  RGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITAS--------SKRQKKTEFQS 183
           RG  FV FE    A  ++ ELDG ++ +  + +E  R  +         S R    +  +
Sbjct: 37  RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRLAVADLGN 96

Query: 184 DPEKPDGCLSA---YVGNLSWNISEKDLRDFFKSS 279
           D  K   C +     V NLS  +S +DL+DF + +
Sbjct: 97  DRRKCSTCKNRNRLIVENLSSRVSWQDLKDFMRQA 131
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>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (APOBEC-1-binding protein 1) (ABBP-1)
          Length = 331

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +1

Query: 217 YVGNLSWNISEKDLRDFF 270
           +VG LSW+ S+KDL+D+F
Sbjct: 71  FVGGLSWDTSKKDLKDYF 88
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>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 31  RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCR 138
           RG  FVTFES+++  K  E+  ++I N+ +  ++ +
Sbjct: 150 RGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185



 Score = 28.9 bits (63), Expect = 3.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 181 SDPEKPDGCLSAYVGNLSWNISEKDLRDFF 270
           + P+ P      ++G LSW  +++ LR++F
Sbjct: 11  ASPDSPHDPCKMFIGGLSWQTTQEGLREYF 40
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>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 31  RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCR 138
           RG  FVTFES+++  K  E+  ++I N+ +  ++ +
Sbjct: 150 RGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185



 Score = 28.9 bits (63), Expect = 3.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 181 SDPEKPDGCLSAYVGNLSWNISEKDLRDFF 270
           + P+ P      ++G LSW  +++ LR++F
Sbjct: 11  ASPDSPHDPCKMFIGGLSWQTTQEGLREYF 40
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>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 31  RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCR 138
           RG  FVTFES+++  K  E+  ++I N+ +  ++ +
Sbjct: 150 RGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185



 Score = 28.9 bits (63), Expect = 3.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 181 SDPEKPDGCLSAYVGNLSWNISEKDLRDFF 270
           + P+ P      ++G LSW  +++ LR++F
Sbjct: 11  ASPDSPHDPCKMFIGGLSWQTTQEGLREYF 40
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>HNRH2_MOUSE (P70333) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')|
          Length = 449

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 19/58 (32%), Positives = 33/58 (56%)
 Frame = +1

Query: 22  GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEK 195
           G   G AFV F S E+A K+L+    +IG+R++ + +     SS+ + +T +  DP +
Sbjct: 149 GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK-----SSRAEVRTHY--DPPR 199



 Score = 27.7 bits (60), Expect = 7.8
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
 Frame = +1

Query: 22  GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 201
           G   G AFV  ES++    +L+ D   +G+R++ V +          K T     P  PD
Sbjct: 51  GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHT----GPNSPD 106

Query: 202 GCLSAYV--GNLSWNISEKDLRDFFKSSRI 285
                +V    L +  S++++  FF    I
Sbjct: 107 TANDGFVRLRGLPFGCSKEEIVQFFSGLEI 136
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>HNRH2_HUMAN (P55795) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')|
           (FTP-3)
          Length = 449

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 19/58 (32%), Positives = 33/58 (56%)
 Frame = +1

Query: 22  GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEK 195
           G   G AFV F S E+A K+L+    +IG+R++ + +     SS+ + +T +  DP +
Sbjct: 149 GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK-----SSRAEVRTHY--DPPR 199



 Score = 28.9 bits (63), Expect = 3.5
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
 Frame = +1

Query: 22  GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 201
           G   G AFV  ES+E    +L+ D   +G+R++ V +          K T     P  PD
Sbjct: 51  GRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHT----GPNSPD 106

Query: 202 GCLSAYV--GNLSWNISEKDLRDFFKSSRI 285
                +V    L +  S++++  FF    I
Sbjct: 107 TANDGFVRLRGLPFGCSKEEIVQFFSGLEI 136
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>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (CArG-binding factor-A) (CBF-A)
          Length = 285

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +1

Query: 217 YVGNLSWNISEKDLRDFF 270
           +VG LSW+ S+KDL+D+F
Sbjct: 78  FVGGLSWDTSKKDLKDYF 95
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>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15|
          Length = 296

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +1

Query: 13  PDSGNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMR 123
           P +G  +G AF+ F   E +  ++  L+GY++G+RF++
Sbjct: 53  PQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLK 90
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>HNRH1_MOUSE (O35737) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)|
          Length = 448

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 19/58 (32%), Positives = 33/58 (56%)
 Frame = +1

Query: 22  GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEK 195
           G   G AFV F S E+A K+L+    +IG+R++ + +     SS+ + +T +  DP +
Sbjct: 148 GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK-----SSRAEVRTHY--DPPR 198
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>HNRH1_HUMAN (P31943) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)|
          Length = 448

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 19/58 (32%), Positives = 33/58 (56%)
 Frame = +1

Query: 22  GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEK 195
           G   G AFV F S E+A K+L+    +IG+R++ + +     SS+ + +T +  DP +
Sbjct: 148 GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK-----SSRAEVRTHY--DPPR 198
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>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear|
           ribonucleoprotein 40) (HNRNP 40)
          Length = 344

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 148 SSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFF 270
           SS  Q     Q D ++       +VG LSW  +EK+LRD F
Sbjct: 41  SSDNQSAASGQRDDDR-----KLFVGGLSWETTEKELRDHF 76
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>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
 Frame = +1

Query: 19  SGNFRGLAFVTFESDEVALKSL-ELDGYKIGNRFM-----RVERCRITASS--KRQKKTE 174
           +GN RG AFVTF +   A  ++ +L+ Y+I N  +      V+ CR+      K +K+ E
Sbjct: 92  NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151

Query: 175 FQSDPEK 195
             S+ +K
Sbjct: 152 ILSEMKK 158
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>RDRP_PMV (P20951) RNA replication protein (176 kDa protein) (ORF 1 protein)|
           [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
           Helicase (EC 3.6.1.-)]
          Length = 1547

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 70  ALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYV 222
           A K++ELD YKI + ++  E        KR K   F+  P++ D  L+A++
Sbjct: 70  AAKTIELDMYKIVSFYLPKENPTTFMFMKRSKLQYFRRGPQQKDVFLNAHI 120
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>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic|
           region
          Length = 403

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 1   LSRFPDSGNFRGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTE 174
           ++ F DSG  +G AF+ F+++E +   L +    KI  R +R+E     +  + +KK E
Sbjct: 270 MATFEDSGKCKGFAFIDFKNEEGSTNELKDKSCRKIAGRPLRMEYGEDRSKRQVRKKVE 328
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>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
          Length = 276

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 1   LSRFPDSGNFRGLAFVTFESDEVA-LKSLELDGYKIGNRFMRVE 129
           LSR   +GN +G A+V FE DEVA + +  ++ Y    R ++ E
Sbjct: 72  LSRSKKTGNSKGYAYVEFECDEVAKIVADTMNNYLFCERLLKCE 115
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>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3|
          Length = 388

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +1

Query: 187 PEKPDGCLSAYVGNLSWNISEKDLRDFF 270
           P +P    +A+VGNLS++++E DL DFF
Sbjct: 89  PSEPP--FTAHVGNLSFDLTENDLGDFF 114
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>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
 Frame = +1

Query: 31  RGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 207
           RG  FVT  S + A  ++E  + Y +  R + V +     S   +        P   +  
Sbjct: 191 RGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERA-------PRVYEPA 243

Query: 208 LSAYVGNLSWNISEKDLRDFF 270
              YVGNL W++    L   F
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLF 264
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>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 328

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 31  RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCR 138
           RG  FVTFE+++V  K  E+  ++I N+ +  ++ +
Sbjct: 151 RGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 186
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>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 587

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
 Frame = +1

Query: 19  SGNFRGLAFVTFESDEVALKSL-ELDGYKIGNRFM-----RVERCRITASS--KRQKKTE 174
           +GN RG AFVTF +   A  ++ +L+ Y+I N  +      V+ CR+      K +K+ E
Sbjct: 92  NGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 151

Query: 175 FQSDPEK 195
             S+ +K
Sbjct: 152 ILSEMKK 158
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>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 346

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 31  RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCR 138
           RG  FVTFE+++V  K  E+  ++I N+ +  ++ +
Sbjct: 151 RGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 186
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>Y1437_PASMU (Q9CL11) Hypothetical protein PM1437|
          Length = 103

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -2

Query: 212 ERQPSGFSGSDWNSVFFCLFELAVILHLSTLINLL 108
           E +P GFSG  W    FCL  L   L L+   NLL
Sbjct: 4   ENKPKGFSGFSWGIALFCLPILLWPLALTISPNLL 38
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>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = +1

Query: 154 KRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFK 273
           +R+++ E   DP++P+     ++G LS+  ++  LR+ F+
Sbjct: 17  RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFE 56



 Score = 27.7 bits (60), Expect = 7.8
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
 Frame = +1

Query: 7   RFPDSGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSD 186
           R P +   RG  FVT+   E    ++    +K+  R +              K+   + D
Sbjct: 68  RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVE------------PKRAVSRED 115

Query: 187 PEKPDGCLSA---YVGNLSWNISEKDLRDFFK 273
             KP   L+    +VG +  +  E +LRD+F+
Sbjct: 116 SVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFE 147
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>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = +1

Query: 154 KRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFK 273
           +R+++ E   DP++P+     ++G LS+  ++  LR+ F+
Sbjct: 17  RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFE 56



 Score = 27.7 bits (60), Expect = 7.8
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
 Frame = +1

Query: 7   RFPDSGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSD 186
           R P +   RG  FVT+   E    ++    +K+  R +              K+   + D
Sbjct: 68  RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVE------------PKRAVSRED 115

Query: 187 PEKPDGCLSA---YVGNLSWNISEKDLRDFFK 273
             KP   L+    +VG +  +  E +LRD+F+
Sbjct: 116 SVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFE 147
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>NUCL_HUMAN (P19338) Nucleolin (Protein C23)|
          Length = 709

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 20/86 (23%), Positives = 39/86 (45%)
 Frame = +1

Query: 22  GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 201
           G  R   +V FES E   K+LEL G K+    +++E+ +               D +K  
Sbjct: 343 GMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK-------------GKDSKKER 389

Query: 202 GCLSAYVGNLSWNISEKDLRDFFKSS 279
              +    NL + +++ +L++ F+ +
Sbjct: 390 DARTLLAKNLPYKVTQDELKEVFEDA 415
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>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 378

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = +1

Query: 154 KRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFK 273
           +R+++ E   DP++P+     ++G LS+  ++  LR+ F+
Sbjct: 17  RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFE 56



 Score = 27.7 bits (60), Expect = 7.8
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
 Frame = +1

Query: 7   RFPDSGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSD 186
           R P +   RG  FVT+   E    ++    +K+  R +              K+   + D
Sbjct: 68  RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVE------------PKRAVSRED 115

Query: 187 PEKPDGCLSA---YVGNLSWNISEKDLRDFFK 273
             KP   L+    +VG +  +  E +LRD+F+
Sbjct: 116 SVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFE 147
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>NUCL_PONPY (Q5RF26) Nucleolin|
          Length = 711

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 20/86 (23%), Positives = 39/86 (45%)
 Frame = +1

Query: 22  GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 201
           G  R   +V FES E   K+LEL G K+    +++E+ +               D +K  
Sbjct: 345 GMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK-------------GKDSKKER 391

Query: 202 GCLSAYVGNLSWNISEKDLRDFFKSS 279
              +    NL + +++ +L++ F+ +
Sbjct: 392 DARTLLAKNLPYKVTQDELKEVFEDA 417
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>YO25_CAEEL (P34675) Hypothetical protein ZK688.5|
          Length = 1620

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -2

Query: 191  SGSDWNSVFFCLFELAVILHLSTLINLLPILYPSSSRDFRATSSDSKVTKARPRKLPESG 12
            +G+DWN +            L+    LLP +  +SS+   ++SS + V+   PRK    G
Sbjct: 1518 AGTDWNDIV-----------LNESRQLLPTIASTSSQPSTSSSSLNTVSTNNPRKRNHDG 1566

Query: 11   KRE 3
             RE
Sbjct: 1567 SRE 1569
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>NUCL_MACFA (Q4R4J7) Nucleolin|
          Length = 710

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 20/86 (23%), Positives = 39/86 (45%)
 Frame = +1

Query: 22  GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 201
           G  R   +V FES E   K+LEL G K+    +++E+ +               D +K  
Sbjct: 344 GMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK-------------GKDSKKER 390

Query: 202 GCLSAYVGNLSWNISEKDLRDFFKSS 279
              +    NL + +++ +L++ F+ +
Sbjct: 391 DARTLLAKNLPYKVTQDELKEVFEDA 416
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>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein|
           PUB1 (ARS consensus-binding protein ACBP-60)
           (Poly(U)-binding protein) (Poly uridylate-binding
           protein)
          Length = 452

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 40  AFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSA 216
           AFV +     A  +L+ L+G +I N  +++                FQS     D   + 
Sbjct: 117 AFVEYHQSHDANIALQTLNGKQIENNIVKINWA-------------FQSQQSSSDDTFNL 163

Query: 217 YVGNLSWNISEKDLRDFFK 273
           +VG+L+ N+ ++ LR+ FK
Sbjct: 164 FVGDLNVNVDDETLRNAFK 182
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>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog|
          Length = 342

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 21/87 (24%), Positives = 35/87 (40%)
 Frame = +1

Query: 13  PDSGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPE 192
           P +   RG  F+T+    +   +     +K+  R +  +R           +TE    PE
Sbjct: 52  PKTKRSRGFGFITYSRAHMVDDAQNARPHKVDGRVVEPKRA--------VPRTEI-GRPE 102

Query: 193 KPDGCLSAYVGNLSWNISEKDLRDFFK 273
                   +VG +   + E DLRD+FK
Sbjct: 103 AGATVKKLFVGGIKEEMEENDLRDYFK 129
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>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 595

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
 Frame = +1

Query: 19  SGNFRGLAFVTFESDEVALKSL-ELDGYKIGNRFM-----RVERCRITASS--KRQKKTE 174
           +GN RG AFVTF + + A  ++ +L+ Y+I    +      V+ CR+      K +K+ E
Sbjct: 92  NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREE 151

Query: 175 FQSDPEK 195
             S+ +K
Sbjct: 152 ILSEMKK 158
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>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
          Length = 278

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 1   LSRFPDSGNFRGLAFVTFESDEVA-LKSLELDGYKIGNRFMRVE 129
           LSR   +GN +G A+V +E DEVA + +  ++ Y    R ++ E
Sbjct: 72  LSRSKKTGNSKGYAYVEYECDEVAKIVADTMNNYLFCERLLKCE 115
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>HNRPF_MACFA (Q60HC3) Heterogeneous nuclear ribonucleoprotein F (hnRNP F)|
          Length = 414

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +1

Query: 22  GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDP 189
           G   G AFV F S E+A K+L     +IG+R++ V +         Q++    SDP
Sbjct: 148 GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK-------SSQEEVRSYSDP 196
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>HNRPF_HUMAN (P52597) Heterogeneous nuclear ribonucleoprotein F (hnRNP F)|
           (Nucleolin-like protein mcs94-1)
          Length = 414

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +1

Query: 22  GNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDP 189
           G   G AFV F S E+A K+L     +IG+R++ V +         Q++    SDP
Sbjct: 148 GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK-------SSQEEVRSYSDP 196
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>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 373

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 31  RGLAFVTFES-DEVALKSLELDGYKIGNRFMRV 126
           +G  FVT  + DE A+    L+GY++G+R ++V
Sbjct: 331 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 363
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>LA_HUMAN (P05455) Lupus La protein (Sjoegren syndrome type B antigen) (SS-B)|
           (La ribonucleoprotein) (La autoantigen)
          Length = 408

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 23/106 (21%)
 Frame = +1

Query: 28  FRGLAFVTFESDEVALKSLELDGYKI------------------GNRFMRVERCRITASS 153
           F+G  FV F+S E A K +E  G K                     R       ++ A  
Sbjct: 150 FKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYFAKKNEERKQNKVEAKLRAKQ 209

Query: 154 KRQKKTEFQSDPEKPD-----GCLSAYVGNLSWNISEKDLRDFFKS 276
           +++ K + + D E        GCL  + G+L      +DL   F +
Sbjct: 210 EQEAKQKLEEDAEMKSLEEKIGCLLKFSGDLDDQTCREDLHILFSN 255
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>MODU_DROME (P13469) DNA-binding protein modulo|
          Length = 542

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 37  LAFVTFESDEVALKSL-ELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPD 201
           LAFVTF+  + A K+L +LDG  +     ++ R   + S +    T   SD  + D
Sbjct: 380 LAFVTFKQSDAATKALAQLDGKTVNKFEWKLHRFERSTSGRAILVTNLTSDATEAD 435
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>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 380

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 31  RGLAFVTFES-DEVALKSLELDGYKIGNRFMRV 126
           +G  FVT  + DE A+    L+GY++G+R ++V
Sbjct: 338 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 370
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>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 385

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 31  RGLAFVTFES-DEVALKSLELDGYKIGNRFMRV 126
           +G  FVT  + DE A+    L+GY++G+R ++V
Sbjct: 343 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 375
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>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)|
          Length = 359

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 31  RGLAFVTFES-DEVALKSLELDGYKIGNRFMRV 126
           +G  FVT  + DE A+    L+GY++G+R ++V
Sbjct: 317 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 349
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>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2|
          Length = 359

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 31  RGLAFVTFES-DEVALKSLELDGYKIGNRFMRV 126
           +G  FVT  + DE A+    L+GY++G+R ++V
Sbjct: 317 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 349
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>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Mel-N1)
          Length = 360

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 31  RGLAFVTFES-DEVALKSLELDGYKIGNRFMRV 126
           +G  FVT  + DE A+    L+GY++G+R ++V
Sbjct: 318 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 350
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>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Hel-N1)
          Length = 359

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 31  RGLAFVTFES-DEVALKSLELDGYKIGNRFMRV 126
           +G  FVT  + DE A+    L+GY++G+R ++V
Sbjct: 317 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 349
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>GATA_SULTO (Q971U6) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 476

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
 Frame = +1

Query: 61  DEVALKSLELDGYKIGNRFMRVERCR------ITASSKRQKKTEFQSDPEKPDGCLSAYV 222
           +++  K+L++D Y +   + R+E+        IT   K + K E +   + P G LS  +
Sbjct: 11  EDLLNKNLDIDEY-VERTYERIEKIEKKIKAFITIRDKEEVKREVREKLKNPKGKLSGIL 69

Query: 223 GNLSWNISEKDLR 261
             +  NIS K +R
Sbjct: 70  IAIKDNISTKGIR 82
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>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing|
           factor SRP55)
          Length = 344

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 217 YVGNLSWNISEKDLRDFF 270
           Y+G LS+N+ EKD++ FF
Sbjct: 5   YIGRLSYNVREKDIQRFF 22
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>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1|
          Length = 632

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 18/105 (17%)
 Frame = +1

Query: 13  PDSGNFRGLAFVTFESDEVALKSL-ELDGYKIGNRFMRVE------RCRI---------- 141
           P +G  R   FV F S++    +L  + GY    R +R+       R  I          
Sbjct: 218 PVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVP 277

Query: 142 TASSKRQKKTEFQS-DPEKPDGCLSAYVGNLSWNISEKDLRDFFK 273
           T++S RQ   +  S DP       + +VG L+ N+SEKDL+  F+
Sbjct: 278 TSTSNRQPNQDLCSMDPLNT----TVFVGGLASNLSEKDLQVCFQ 318
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>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 519

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 13  PDSGNFRGLAFVTFES-DEVALKSLELDGYKIGNRFMRV 126
           P +   +G  FV+  + DE A+    L+GY +GNR ++V
Sbjct: 473 PTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQV 511
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>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 9/27 (33%), Positives = 21/27 (77%)
 Frame = +1

Query: 211 SAYVGNLSWNISEKDLRDFFKSSRIAS 291
           +A++GNL ++++E  ++DFF+   I++
Sbjct: 97  TAFLGNLPYDVTEDSIKDFFRGLNISA 123
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>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 483

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 13  PDSGNFRGLAFVTFES-DEVALKSLELDGYKIGNRFMRV 126
           P +   +G  FV+  + DE A+    L+GY +GNR ++V
Sbjct: 437 PTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQV 475
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>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 1   LSRFPDSGNFRGLAFVTFESDEVALKSLE-LDGYKIGNR 114
           + R PD+GN +G AF+ F S + +  ++E ++G  + NR
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR 170
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>SSB1_YEAST (P10080) Single-stranded nucleic acid-binding protein|
          Length = 294

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +1

Query: 16  DSGNFRGLAFVTF--ESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDP 189
           DS N RG+AFVTF  E+ ++  K+ E  G   G+R + V+   I   +  ++  +     
Sbjct: 232 DSAN-RGMAFVTFSGENVDIEAKAEEFKGKVFGDRELTVDVAVIRPENDEEEIEQETGSE 290

Query: 190 EKPD 201
           EK +
Sbjct: 291 EKQE 294
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>K0226_MOUSE (Q80U62) Protein KIAA0226|
          Length = 956

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 116 NLLPILYPSSSRDFRATSSDSKVTKARPRKLPESGKRE 3
           NLLP    + +  FR TSS S+ +     +L ESG  E
Sbjct: 535 NLLPAYRETENGSFRVTSSSSQFSSRDSTQLSESGSAE 572
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>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9|
          Length = 221

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 181 SDPEKPDGCLSAYVGNLSWNISEKDLRD-FFKSSRI 285
           +D    +G    YVGNL  ++ EKDL D F+K  RI
Sbjct: 5   ADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRI 40
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>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing|
           factor SRp30C)
          Length = 221

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 181 SDPEKPDGCLSAYVGNLSWNISEKDLRD-FFKSSRI 285
           +D    +G    YVGNL  ++ EKDL D F+K  RI
Sbjct: 5   ADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRI 40
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>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP|
           A1) (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 365

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 22/89 (24%), Positives = 35/89 (39%)
 Frame = +1

Query: 7   RFPDSGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSD 186
           R P+S   RG  FVT+ S +    ++    +K+  R             KR    E  S 
Sbjct: 47  RDPNSKRSRGFGFVTYLSTDEVDAAMTARPHKVDGR---------VVEPKRAVSREDSSR 97

Query: 187 PEKPDGCLSAYVGNLSWNISEKDLRDFFK 273
           P         +VG +  +  E  LR++F+
Sbjct: 98  PGAHLTVKKIFVGGIKEDTEEDHLREYFE 126
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>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9|
          Length = 222

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 181 SDPEKPDGCLSAYVGNLSWNISEKDLRD-FFKSSRI 285
           +D    +G    YVGNL  ++ EKDL D F+K  RI
Sbjct: 6   ADERGGEGDGRIYVGNLPSDVREKDLEDLFYKYGRI 41
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>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA|
          Length = 101

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 208 LSAYVGNLSWNISEKDLRDFF 270
           +S YVGNLS+++SE DL   F
Sbjct: 1   MSIYVGNLSYDVSEADLTAVF 21
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>VL1_BPV2 (P06458) Major capsid protein L1|
          Length = 497

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +1

Query: 13  PDSGNFRGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPE 192
           P    + GL F + +  E    SL+LD + +G RF+  +    +   KR   T   S P 
Sbjct: 433 PKEDPYAGLKFWSIDLKEKL--SLDLDQFPLGRRFLAQQGAGCSTVRKRAVATRNSSKPA 490

Query: 193 K 195
           K
Sbjct: 491 K 491
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>RNP24_SCHPO (Q09100) RNA-binding protein rnp24|
          Length = 369

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 15/95 (15%)
 Frame = +1

Query: 31  RGLAFVTFESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCL 210
           +G A+V F +++    +L+     +  R + ++             T+F   P KP   L
Sbjct: 165 KGFAYVDFATEDALKLALQCSEKALNGRNILIK-----------SNTDFSGRPSKPANTL 213

Query: 211 SA---------------YVGNLSWNISEKDLRDFF 270
           S                +VGNL +  ++ DL++ F
Sbjct: 214 SKTASIQSSKKEPSSILFVGNLDFETTDADLKEHF 248
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>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 8/27 (29%), Positives = 22/27 (81%)
 Frame = +1

Query: 211 SAYVGNLSWNISEKDLRDFFKSSRIAS 291
           +A++GNL ++++E+ +++FF+   I++
Sbjct: 97  TAFLGNLPYDVTEESIKEFFRGLNISA 123
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>HOME2_MOUSE (Q9QWW1) Homer protein homolog 2 (Homer-2) (Cupidin)|
           (VASP/Ena-related gene up-regulated during seizure and
           LTP 2) (Vesl-2)
          Length = 354

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 79  SLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGC 207
           S EL   K   +F  V      A  K Q+KTE  S+  +  GC
Sbjct: 91  SSELQLTKFAEKFQEVREAARLARDKSQEKTETSSNHSQESGC 133
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>UGT46_CAEEL (Q10941) Putative UDP-glucuronosyltransferase ugt-46 precursor (EC|
           2.4.1.17) (UDPGT)
          Length = 531

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = +1

Query: 157 RQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFKSSRIAS 291
           R+ K +  ++PE+ +  +S  + N  +++  + +RD  KS  ++S
Sbjct: 412 RRHKKQLLTEPEEIEKAISEIIHNKKYSLKAQRIRDLIKSKPLSS 456
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>PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein|
          Length = 138

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 7   RFPDSGNFRGLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCRITASSKR 159
           R  ++   RG AFV +E    A  + E L GY + NR++ V   + T + KR
Sbjct: 49  RVGNTAETRGTAFVVYEDIFDAKTACEHLSGYNVSNRYLVVLYYQATKAWKR 100
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>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein|
          Length = 348

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +1

Query: 34  GLAFVTFESDEVALKSLE-LDGYKIGNRFMRVERCR-ITASSKRQKKTEFQSDPEKPD 201
           G+AFVTF + E   K++E L+G  + +R + V++ R +     + +K     + E+P+
Sbjct: 90  GIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARPVQEQPIKDRKKSKNKNGEEPE 147
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>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 430

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = +1

Query: 94  GYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFK 273
           G K+ +R + ++    T  S+R KK +   + E+     + +VGNL    ++K L+ FFK
Sbjct: 149 GVKVADRKI-LDDTEDTVVSQR-KKIQINQEEERLKNERTVFVGNLPVTCNKKKLKSFFK 206
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>ATC5_YEAST (P32660) Probable phospholipid-transporting ATPase DNF1 (EC|
           3.6.3.1)
          Length = 1571

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 148 SSKRQKKTEFQSDPEKPDGCLSAYVGNLSW-NISEKDLRD 264
           +SK   +T+F  + E P   L  Y GN+ W N+++ ++R+
Sbjct: 458 TSKDIARTKFWIESEGPHSNLYTYQGNMKWRNLADGEIRN 497
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>RL16_CAMJR (Q5HS97) 50S ribosomal protein L16|
          Length = 141

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +1

Query: 52  FESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP 198
           F   E ALK+ E    +I +R +   R  +T   KRQ KT  +  P+KP
Sbjct: 27  FTFGEFALKATEAG--RINSRQIEAARIALTRFVKRQGKTWIRVFPDKP 73
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>RL16_CAMJE (Q9PLX8) 50S ribosomal protein L16|
          Length = 141

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +1

Query: 52  FESDEVALKSLELDGYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKP 198
           F   E ALK+ E    +I +R +   R  +T   KRQ KT  +  P+KP
Sbjct: 27  FTFGEFALKATEAG--RINSRQIEAARIALTRFVKRQGKTWIRVFPDKP 73


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,726,262
Number of Sequences: 219361
Number of extensions: 515943
Number of successful extensions: 1944
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 1865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1940
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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