ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal19g23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YC20L_ARATH (O80813) Ycf20-like protein 39 0.015
2CU030_HUMAN (Q9UFM2) Putative protein C21orf30 32 1.1
3ESR2_ANGJA (O13012) Estrogen receptor beta (ER-beta) 29 9.2

>YC20L_ARATH (O80813) Ycf20-like protein|
          Length = 121

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 18/27 (66%), Positives = 21/27 (77%)
 Frame = +3

Query: 519 LGRTRLGRLAQAAGRQLFEKLNSARSN 599
           LG TRLGR+A A G+QL  K+NSAR N
Sbjct: 8   LGSTRLGRIAIAGGKQLLGKINSARKN 34



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>CU030_HUMAN (Q9UFM2) Putative protein C21orf30|
          Length = 244

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 3/107 (2%)
 Frame = -2

Query: 539 AKPCPAKKTTVLFKVFAIG--IRWSTCLQGKHRPPS*VFHLVTDCSS-ARLCSPQEAGPA 369
           A PC +   +    +  +G   RW    +    PP       TDC S   L  P      
Sbjct: 124 ASPCDSVLCSPDVSMCTLGPAARWDAQAKSAPLPPC-----CTDCKSFPHLQRPWAQPHT 178

Query: 368 KDITQRRHGAVADTSSAEASCWRSWRAERCTMPQKHGLVSGGYALRP 228
              T    G       ++ + W  WR+  C   Q  G+ + GY++ P
Sbjct: 179 SQATSVDSGEAGTKGMSQFTVWTWWRSRPCETRQGEGIGNWGYSVTP 225



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>ESR2_ANGJA (O13012) Estrogen receptor beta (ER-beta)|
          Length = 573

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 23/82 (28%), Positives = 32/82 (39%)
 Frame = +3

Query: 249 AHQTMLLRHGASLCAPRPPAGGLCAGGVRHSSVPALRDVLCRTCFLRTAKTSGGAISYQM 428
           AH  MLL H   L       G      ++  +V  L D+L       T  +S  + SY  
Sbjct: 485 AHLLMLLAHIRHLSNK----GMEHLSNMKRKNVVPLYDLLLEMLDANTMHSSRMSASYSS 540

Query: 429 KNSRWRPVFALETGGPPNADGE 494
           + S W      + G PP+  GE
Sbjct: 541 QPSPWSQAAQSQPGPPPSCSGE 562


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,303,591
Number of Sequences: 219361
Number of extensions: 1535986
Number of successful extensions: 4734
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4734
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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