>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  153 bits (77), Expect = 8e-34
 Identities = 158/185 (85%)
 Strand = Plus / Minus

                                                                           
Query: 417     agttaccagatgaaaaactcaagatggaggcctgtgtttgccttggagacaggtggacca 476
               ||||||||||||||||| || ||||||| ||| || ||||||||||| ||||||||||||
Sbjct: 7566585 agttaccagatgaaaaattctagatggaagccagtatttgccttggaaacaggtggacca 7566526

                                                                           
Query: 477     cctaatgccgatggcgaagactttgaagaggacagtggttttcttggcaggacaaggctt 536
                ||||||| ||| || ||||||| ||||| ||  |||| |||||||| || |||||||| 
Sbjct: 7566525 tctaatgctgatagccaagacttcgaagatgatggtggctttcttggtagaacaaggctg 7566466

                                                                           
Query: 537     ggccgactcgcccaagctgctggaaggcaactgtttgaaaagctgaactctgccagaagc 596
               ||  | |||  |||||||||||| ||| ||||  ||||||||||||||||||||||||||
Sbjct: 7566465 ggaaggctcatccaagctgctgggagggaactacttgaaaagctgaactctgccagaagc 7566406

                    
Query: 597     aactc 601
               |||||
Sbjct: 7566405 aactc 7566401

>dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1705_E12
          Length = 191416

 Score =  153 bits (77), Expect = 8e-34
 Identities = 158/185 (85%)
 Strand = Plus / Minus

                                                                          
Query: 417    agttaccagatgaaaaactcaagatggaggcctgtgtttgccttggagacaggtggacca 476
              ||||||||||||||||| || ||||||| ||| || ||||||||||| ||||||||||||
Sbjct: 160291 agttaccagatgaaaaattctagatggaagccagtatttgccttggaaacaggtggacca 160232

                                                                          
Query: 477    cctaatgccgatggcgaagactttgaagaggacagtggttttcttggcaggacaaggctt 536
               ||||||| ||| || ||||||| ||||| ||  |||| |||||||| || |||||||| 
Sbjct: 160231 tctaatgctgatagccaagacttcgaagatgatggtggctttcttggtagaacaaggctg 160172

                                                                          
Query: 537    ggccgactcgcccaagctgctggaaggcaactgtttgaaaagctgaactctgccagaagc 596
              ||  | |||  |||||||||||| ||| ||||  ||||||||||||||||||||||||||
Sbjct: 160171 ggaaggctcatccaagctgctgggagggaactacttgaaaagctgaactctgccagaagc 160112

                   
Query: 597    aactc 601
              |||||
Sbjct: 160111 aactc 160107

>dbj|AK059944.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-G07, full
           insert sequence
          Length = 973

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 142/178 (79%)
 Strand = Plus / Plus

                                                                       
Query: 415 tcagttaccagatgaaaaactcaagatggaggcctgtgtttgccttggagacaggtggac 474
           |||||| |||||||||||   | ||||||| ||| || ||||||||||| ||||||||||
Sbjct: 222 tcagttgccagatgaaaagaaccagatggaagccagtctttgccttggaaacaggtggac 281

                                                                       
Query: 475 cacctaatgccgatggcgaagactttgaagaggacagtggttttcttggcaggacaaggc 534
           || |||| || ||   | |||| || ||||| ||  |||| ||||||||||| |||||||
Sbjct: 282 catctaacgctgacaaccaagatttcgaagatgatggtggctttcttggcagaacaaggc 341

                                                                     
Query: 535 ttggccgactcgcccaagctgctggaaggcaactgtttgaaaagctgaactctgccag 592
           | ||  |||||  ||| |||||||  ||| ||||  ||||||| ||||| ||||||||
Sbjct: 342 tgggaagactcatccaggctgctgcgagggaactacttgaaaaactgaattctgccag 399

>gb|AC090056.2|AC090056 Oryza sativa chromosome 9 clone PAC0663H05, complete sequence
          Length = 161873

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 140/176 (79%)
 Strand = Plus / Plus

                                                                         
Query: 417   agttaccagatgaaaaactcaagatggaggcctgtgtttgccttggagacaggtggacca 476
             |||| |||||||||||   | ||||||| ||| || ||||||||||| ||||||||||||
Sbjct: 43459 agttgccagatgaaaagaaccagatggaagccagtctttgccttggaaacaggtggacca 43518

                                                                         
Query: 477   cctaatgccgatggcgaagactttgaagaggacagtggttttcttggcaggacaaggctt 536
              |||| || ||   | |||| || ||||| ||  |||| ||||||||||| |||||||| 
Sbjct: 43519 tctaacgctgacaaccaagatttcgaagatgatggtggctttcttggcagaacaaggctg 43578

                                                                     
Query: 537   ggccgactcgcccaagctgctggaaggcaactgtttgaaaagctgaactctgccag 592
             ||  |||||  ||| |||||||  ||| ||||  ||||||| ||||| ||||||||
Sbjct: 43579 ggaagactcatccaggctgctgcgagggaactacttgaaaaactgaattctgccag 43634

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 140/176 (79%)
 Strand = Plus / Minus

                                                                           
Query: 417     agttaccagatgaaaaactcaagatggaggcctgtgtttgccttggagacaggtggacca 476
               |||| |||||||||||   | ||||||| ||| || ||||||||||| ||||||||||||
Sbjct: 6386201 agttgccagatgaaaagaaccagatggaagccagtctttgccttggaaacaggtggacca 6386142

                                                                           
Query: 477     cctaatgccgatggcgaagactttgaagaggacagtggttttcttggcaggacaaggctt 536
                |||| || ||   | |||| || ||||| ||  |||| ||||||||||| |||||||| 
Sbjct: 6386141 tctaacgctgacaaccaagatttcgaagatgatggtggctttcttggcagaacaaggctg 6386082

                                                                       
Query: 537     ggccgactcgcccaagctgctggaaggcaactgtttgaaaagctgaactctgccag 592
               ||  |||||  ||| |||||||  ||| ||||  ||||||| ||||| ||||||||
Sbjct: 6386081 ggaagactcatccaggctgctgcgagggaactacttgaaaaactgaattctgccag 6386026

>dbj|AP005705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0453B09
          Length = 173688

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 140/176 (79%)
 Strand = Plus / Minus

                                                                         
Query: 417   agttaccagatgaaaaactcaagatggaggcctgtgtttgccttggagacaggtggacca 476
             |||| |||||||||||   | ||||||| ||| || ||||||||||| ||||||||||||
Sbjct: 52278 agttgccagatgaaaagaaccagatggaagccagtctttgccttggaaacaggtggacca 52219

                                                                         
Query: 477   cctaatgccgatggcgaagactttgaagaggacagtggttttcttggcaggacaaggctt 536
              |||| || ||   | |||| || ||||| ||  |||| ||||||||||| |||||||| 
Sbjct: 52218 tctaacgctgacaaccaagatttcgaagatgatggtggctttcttggcagaacaaggctg 52159

                                                                     
Query: 537   ggccgactcgcccaagctgctggaaggcaactgtttgaaaagctgaactctgccag 592
             ||  |||||  ||| |||||||  ||| ||||  ||||||| ||||| ||||||||
Sbjct: 52158 ggaagactcatccaggctgctgcgagggaactacttgaaaaactgaattctgccag 52103

>dbj|AP006758.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0663H05
          Length = 161938

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 140/176 (79%)
 Strand = Plus / Minus

                                                                          
Query: 417    agttaccagatgaaaaactcaagatggaggcctgtgtttgccttggagacaggtggacca 476
              |||| |||||||||||   | ||||||| ||| || ||||||||||| ||||||||||||
Sbjct: 118480 agttgccagatgaaaagaaccagatggaagccagtctttgccttggaaacaggtggacca 118421

                                                                          
Query: 477    cctaatgccgatggcgaagactttgaagaggacagtggttttcttggcaggacaaggctt 536
               |||| || ||   | |||| || ||||| ||  |||| ||||||||||| |||||||| 
Sbjct: 118420 tctaacgctgacaaccaagatttcgaagatgatggtggctttcttggcagaacaaggctg 118361

                                                                      
Query: 537    ggccgactcgcccaagctgctggaaggcaactgtttgaaaagctgaactctgccag 592
              ||  |||||  ||| |||||||  ||| ||||  ||||||| ||||| ||||||||
Sbjct: 118360 ggaagactcatccaggctgctgcgagggaactacttgaaaaactgaattctgccag 118305

>gb|AC104978.2| Homo sapiens chromosome 11, clone RP11-244O16, complete sequence
          Length = 154105

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 201   ctccccttccattgctctcttc 222
             ||||||||||||||||||||||
Sbjct: 87403 ctccccttccattgctctcttc 87382

>gb|AC154623.2| Mus musculus BAC clone RP23-327K7 from chromosome 13, complete sequence
          Length = 190884

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 198    tccctccccttccattgctctcttc 222
              |||||||||||||||| ||||||||
Sbjct: 107039 tccctccccttccatttctctcttc 107015

>emb|BX005442.10| Zebrafish DNA sequence from clone DKEY-88J15, complete sequence
          Length = 200176

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 564    caactgtttgaaaagctgaactctg 588
              |||||||||||||||||||| ||||
Sbjct: 150298 caactgtttgaaaagctgaaatctg 150322

>dbj|AB056788.1| Macaca fascicularis brain cDNA clone:QnpA-14496, full insert
           sequence
          Length = 2002

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 505 aggacagtggttttcttggca 525
           |||||||||||||||||||||
Sbjct: 573 aggacagtggttttcttggca 593

>ref|XM_509347.1| PREDICTED: Pan troglodytes similar to ubiquitin-specific proteinase
           30 (LOC452215), mRNA
          Length = 1863

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 517 ttcttggcaggacaaggctt 536
           ||||||||||||||||||||
Sbjct: 450 ttcttggcaggacaaggctt 431

>gb|AE017134.1| Yersinia pestis biovar Medievalis str. 91001 section 8 of 16 of the
             complete genome
          Length = 290029

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 563   gcaactgtttgaaaagctga 582
             ||||||||||||||||||||
Sbjct: 80819 gcaactgtttgaaaagctga 80800

>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 563     gcaactgtttgaaaagctga 582
               ||||||||||||||||||||
Sbjct: 2487264 gcaactgtttgaaaagctga 2487283

>ref|NM_032663.2| Homo sapiens ubiquitin specific peptidase 30 (USP30), mRNA
          Length = 2117

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 517 ttcttggcaggacaaggctt 536
           ||||||||||||||||||||
Sbjct: 492 ttcttggcaggacaaggctt 473

>gb|BC022094.2| Homo sapiens ubiquitin specific peptidase 30, mRNA (cDNA clone
           IMAGE:3536512), partial cds
          Length = 1669

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 517 ttcttggcaggacaaggctt 536
           ||||||||||||||||||||
Sbjct: 44  ttcttggcaggacaaggctt 25

>gb|BC004868.2| Homo sapiens ubiquitin specific peptidase 30, mRNA (cDNA clone
           MGC:10702 IMAGE:3833242), complete cds
          Length = 2117

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 517 ttcttggcaggacaaggctt 536
           ||||||||||||||||||||
Sbjct: 492 ttcttggcaggacaaggctt 473

>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 563     gcaactgtttgaaaagctga 582
               ||||||||||||||||||||
Sbjct: 2401115 gcaactgtttgaaaagctga 2401096

>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145
              biosynthetic gene cluster, complete sequence
          Length = 126933

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    ccccttccattgctctcttc 222
              ||||||||||||||||||||
Sbjct: 105941 ccccttccattgctctcttc 105922

>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16
          Length = 347137

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 292    cgccacgaccgccagcagga 311
              ||||||||||||||||||||
Sbjct: 336553 cgccacgaccgccagcagga 336534

>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14
          Length = 349305

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 292    cgccacgaccgccagcagga 311
              ||||||||||||||||||||
Sbjct: 275550 cgccacgaccgccagcagga 275531

>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12
          Length = 349346

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 292    cgccacgaccgccagcagga 311
              ||||||||||||||||||||
Sbjct: 198936 cgccacgaccgccagcagga 198917

>emb|AJ414151.1| Yersinia pestis strain CO92 complete genome; segment 11/20
          Length = 334050

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 563   gcaactgtttgaaaagctga 582
             ||||||||||||||||||||
Sbjct: 66220 gcaactgtttgaaaagctga 66201

>emb|CR628408.3| Human DNA sequence from clone WI2-925H4 on chromosome 1, complete
             sequence
          Length = 21495

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   tcctcatatccctccccttc 209
             ||||||||||||||||||||
Sbjct: 12940 tcctcatatccctccccttc 12921

>gb|AC098481.2| Homo sapiens chromosome 3 clone RP11-349E16, complete sequence
          Length = 227137

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 459   ttggagacaggtggaccacc 478
             ||||||||||||||||||||
Sbjct: 85461 ttggagacaggtggaccacc 85480

>gb|AY043300.1| Foot-and-mouth disease virus SAT 1 polyprotein mRNA, partial cds
          Length = 2238

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 323 tggaggtgtccgccacagct 342
           ||||||||||||||||||||
Sbjct: 575 tggaggtgtccgccacagct 594

>dbj|AK097830.1| Homo sapiens cDNA FLJ40511 fis, clone TESTI2046358
          Length = 2483

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 517 ttcttggcaggacaaggctt 536
           ||||||||||||||||||||
Sbjct: 876 ttcttggcaggacaaggctt 857

>gb|AC114876.2| Homo sapiens chromosome 3 clone RP11-728B21, complete sequence
          Length = 171697

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 459   ttggagacaggtggaccacc 478
             ||||||||||||||||||||
Sbjct: 38330 ttggagacaggtggaccacc 38311

>dbj|AK027820.1| Homo sapiens cDNA FLJ14914 fis, clone PLACE1006829, weakly similar
           to UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 (EC 3.1.2.15)
          Length = 1918

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 517 ttcttggcaggacaaggctt 536
           ||||||||||||||||||||
Sbjct: 467 ttcttggcaggacaaggctt 448

>gb|DQ378292.1| Drosophila virilis strain Tucson 15010-1001.10 fosmid 18G4, complete
             sequence
          Length = 47154

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   taccagatgaaaaactcaag 439
             ||||||||||||||||||||
Sbjct: 42014 taccagatgaaaaactcaag 41995

>emb|BX323874.4| Zebrafish DNA sequence from clone DKEY-104N21 in linkage group 16,
             complete sequence
          Length = 256605

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 561   aggcaactgtttgaaaagctgaactctg 588
             |||||||| |||||||||||||| ||||
Sbjct: 27908 aggcaactatttgaaaagctgaaatctg 27881

>emb|BX571853.4| Zebrafish DNA sequence from clone DKEY-29H14 in linkage group 16,
             complete sequence
          Length = 191052

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 561   aggcaactgtttgaaaagctgaactctg 588
             |||||||| |||||||||||||| ||||
Sbjct: 33159 aggcaactatttgaaaagctgaaatctg 33132

>emb|AJ586136.1| Homo sapiens mRNA for ubiquitin-specific proteinase 30 (USP30 gene)
          Length = 1554

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 517 ttcttggcaggacaaggctt 536
           ||||||||||||||||||||
Sbjct: 393 ttcttggcaggacaaggctt 374

>gb|AY890680.1| Synthetic construct Homo sapiens clone FLH147902.01X ubiquitin
           specific protease 30 (MGC10702) mRNA, complete cds
          Length = 1527

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 517 ttcttggcaggacaaggctt 536
           ||||||||||||||||||||
Sbjct: 366 ttcttggcaggacaaggctt 347

>gb|AY893160.1| Synthetic construct Homo sapiens clone FLH147923.01L ubiquitin
           specific protease 30 (MGC10702) mRNA, partial cds
          Length = 1527

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 517 ttcttggcaggacaaggctt 536
           ||||||||||||||||||||
Sbjct: 366 ttcttggcaggacaaggctt 347

>emb|CT010481.8| M.truncatula DNA sequence from clone MTH2-62G7 on chromosome 3,
             complete sequence
          Length = 113400

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 519   cttggcaggacaaggcttgg 538
             ||||||||||||||||||||
Sbjct: 89606 cttggcaggacaaggcttgg 89625


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,680,015
Number of Sequences: 3902068
Number of extensions: 4680015
Number of successful extensions: 94311
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94151
Number of HSP's gapped (non-prelim): 153
length of query: 603
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 580
effective length of database: 17,143,297,704
effective search space: 9943112668320
effective search space used: 9943112668320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)