ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal19f21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YFE0_YEAST (P43562) Probable metabolite transport protein YFL040W 29 7.4
2TGFB3_CHICK (P16047) Transforming growth factor beta-3 precursor... 29 9.6

>YFE0_YEAST (P43562) Probable metabolite transport protein YFL040W|
          Length = 540

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +2

Query: 287 QFLPRFVKI*GTPSIQVFTKVSNFVLSSLIPVLTTIDRPHCLVAGTTLVI---LLFLSFY 457
           + LP  VK+ G      F  + NF+L+ L PV+  I+R    + GTT +I   L FL   
Sbjct: 416 EMLPSRVKVKGFAICVTFGWLGNFILTFLCPVM--IER----LKGTTFIIFGSLTFLISL 469

Query: 458 STKIFF 475
           S  I+F
Sbjct: 470 SVLIWF 475



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>TGFB3_CHICK (P16047) Transforming growth factor beta-3 precursor (TGF-beta-3)|
          Length = 412

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 482 IIQRRFLWNKKIRTRGSPRWCQRRDNEGDRWWL 384
           I ++R+L  + ++TRGSP W      +  R WL
Sbjct: 180 IAKQRYLSGRNVQTRGSPEWLSFDVTDTVREWL 212


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,344,308
Number of Sequences: 219361
Number of extensions: 1541819
Number of successful extensions: 3276
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3275
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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