ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal18p22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105969.1| Zea mays PCO131995 mRNA sequence 460 e-126
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 252 8e-64
3dbj|AP005002.3| Oryza sativa (japonica cultivar-group) genomic D... 252 8e-64
4ref|XM_467920.1| Oryza sativa (japonica cultivar-group), mRNA 129 8e-27
5dbj|AK060417.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 8e-27
6ref|NM_112804.3| Arabidopsis thaliana ATPREP1/ATZNMP; metalloend... 101 2e-18
7gb|AY091051.1| Arabidopsis thaliana putative metalloprotease (At... 101 2e-18
8gb|AY090240.1| Arabidopsis thaliana AT3g19170/MVI11_8 mRNA, comp... 101 2e-18
9gb|BT006362.1| Arabidopsis thaliana At3g19170/MVI11_8 gene, comp... 101 2e-18
10gb|BT002372.1| Arabidopsis thaliana clone U19043 putative metall... 101 2e-18
11dbj|AP000419.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 82 2e-12
12ref|NM_180631.1| Arabidopsis thaliana ATPREP2; metalloendopeptid... 74 4e-10
13ref|NM_180630.1| Arabidopsis thaliana ATPREP2; metalloendopeptid... 74 4e-10
14ref|NM_103851.3| Arabidopsis thaliana ATPREP2; metalloendopeptid... 74 4e-10
15gb|AY074305.1| Arabidopsis thaliana putative hydrogenase protein... 74 4e-10
16gb|BT004376.1| Arabidopsis thaliana clone U19879 putative hydrog... 74 4e-10
17gb|AC011807.4|AC011807 Arabidopsis thaliana chromosome I BAC F14... 74 4e-10
18gb|AC102103.10| Mus musculus chromosome 15, clone RP23-82K1, com... 40 5.5
19gb|BC036982.1| Mus musculus thyrotroph embryonic factor, transcr... 40 5.5
20gb|BC017689.1| Mus musculus thyrotroph embryonic factor, transcr... 40 5.5
21ref|NM_153484.1| Mus musculus thyrotroph embryonic factor (Tef),... 40 5.5
22ref|NM_017376.2| Mus musculus thyrotroph embryonic factor (Tef),... 40 5.5
23gb|AY540631.1| Mus musculus thyrotroph embryonic factor alpha is... 40 5.5
24gb|AC005486.2| Homo sapiens PAC clone RP5-1070G24 from 7, comple... 40 5.5
25gb|AC004413.2| Homo sapiens PAC clone RP4-650P9 from 7, complete... 40 5.5
26emb|BX119976.8| Zebrafish DNA sequence from clone CH211-196F5 in... 40 5.5
27dbj|AK141606.1| Mus musculus adult male hippocampus cDNA, RIKEN ... 40 5.5
28dbj|AK147965.1| Mus musculus melanocyte cDNA, RIKEN full-length ... 40 5.5
29dbj|AK154472.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 5.5
30gb|AC158970.3| Mus musculus chromosome 15, clone RP24-186A9, com... 40 5.5
31dbj|AK009518.1| Mus musculus adult male tongue cDNA, RIKEN full-... 40 5.5
32gb|BC023410.1| Mus musculus thyrotroph embryonic factor, mRNA (c... 40 5.5
33dbj|AK010205.1| Mus musculus adult male tongue cDNA, RIKEN full-... 40 5.5
34dbj|AK042146.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 5.5
35dbj|AK085437.1| Mus musculus 0 day neonate kidney cDNA, RIKEN fu... 40 5.5 
>gb|AY105969.1| Zea mays PCO131995 mRNA sequence
          Length = 1779

 Score =  460 bits (232), Expect = e-126
 Identities = 355/396 (89%)
 Strand = Plus / Plus

                                                                        
Query: 15   aagtgatccatggctctctcgattgccttctgttaatgaagccattgttatccctacaca 74
            ||||||||||||||| |||||  | |||||||| ||||||||||||||| |||| || ||
Sbjct: 1118 aagtgatccatggctttctcgtctaccttctgtgaatgaagccattgttgtcccaactca 1177

                                                                        
Query: 75   ggttaattatgttggaaaagctggaaacctataccaaagtggataccagctcaatggaag 134
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1178 ggttaattatgttggaaaagctggaaacctttaccaaagtggataccagctcaatggaag 1237

                                                                        
Query: 135  tgcctatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagttag 194
             ||||||||||| || |||||||||||||| |||||||||||||| || |||||||||||
Sbjct: 1238 cgcctatgtcatctcaaagcacataagcaatacatggttatgggatcgtgttcgagttag 1297

                                                                        
Query: 195  tggtggagcatatggagggttttgtgattttgacactcattcaggtgtcttttcctattt 254
             ||||| ||||||||||| ||||||||||||||||| |||||||| || || || |||||
Sbjct: 1298 cggtggtgcatatggaggattttgtgattttgacacccattcaggagtgttctcatattt 1357

                                                                        
Query: 255  gtcataccgtgatccgaacttgctgaaaacactagaggtctatgatgggactgcaaagtt 314
             ||||| |||||||| ||||| ||||||||||||||||||||||||| ||| ||||  ||
Sbjct: 1358 atcatatcgtgatccaaacttactgaaaacactagaggtctatgatgagacagcaagatt 1417

                                                                        
Query: 315  cctcagagaactagaggtagatgatgatgctctcacaaaagctattattggcaccatagg 374
            ||||||||| |||||  | ||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 1418 cctcagagagctagaattggatgatgatgcactcacaaaagctattattggaaccatagg 1477

                                                
Query: 375  ggatgttgattcctatcagctaccagatgctaaagg 410
             ||||||||  |||| ||||||||||||||||||||
Sbjct: 1478 cgatgttgacgcctaccagctaccagatgctaaagg 1513
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  252 bits (127), Expect = 8e-64
 Identities = 157/167 (94%)
 Strand = Plus / Plus

                                                                            
Query: 74       aggttaattatgttggaaaagctggaaacctataccaaagtggataccagctcaatggaa 133
                ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 32086509 aggttaattatgttggaaaagctggaaacctgtaccaaagtggatatcagctcaatggaa 32086568

                                                                            
Query: 134      gtgcctatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagtta 193
                ||||||||||||| |||||||| |||||||| || ||||| |||||||| ||||||||||
Sbjct: 32086569 gtgcctatgtcatctccaagcatataagcaatacgtggttgtgggaccgtgttcgagtta 32086628

                                                               
Query: 194      gtggtggagcatatggagggttttgtgattttgacactcattcaggt 240
                ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 32086629 gtggtggtgcatatggagggttttgtgattttgacacccattcaggt 32086675



 Score =  147 bits (74), Expect = 3e-32
 Identities = 137/158 (86%)
 Strand = Plus / Plus

                                                                            
Query: 253      ttgtcataccgtgatccgaacttgctgaaaacactagaggtctatgatgggactgcaaag 312
                ||||||||||||||||| || ||  ||||||||||||| || ||||||| ||| || |||
Sbjct: 32086806 ttgtcataccgtgatccaaatttattgaaaacactagaagtttatgatgagacggccaag 32086865

                                                                            
Query: 313      ttcctcagagaactagaggtagatgatgatgctctcacaaaagctattattggcaccata 372
                ||||| ||||| |||||  | |||||||||  ||||||||||||||||||||| ||||||
Sbjct: 32086866 ttcctaagagagctagaaatggatgatgattgtctcacaaaagctattattggtaccata 32086925

                                                      
Query: 373      ggggatgttgattcctatcagctaccagatgctaaagg 410
                || || ||||||||||| ||||| ||||||||||||||
Sbjct: 32086926 ggtgacgttgattcctaccagctgccagatgctaaagg 32086963



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                          
Query: 15       aagtgatccatggctctctcgattgccttctgttaatgaagc 56
                ||||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 32086331 aagtgatccatggctttctcgattgccatctgttaacgaagc 32086372
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>dbj|AP005002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0486G03
          Length = 146713

 Score =  252 bits (127), Expect = 8e-64
 Identities = 157/167 (94%)
 Strand = Plus / Plus

                                                                         
Query: 74    aggttaattatgttggaaaagctggaaacctataccaaagtggataccagctcaatggaa 133
             ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 23165 aggttaattatgttggaaaagctggaaacctgtaccaaagtggatatcagctcaatggaa 23224

                                                                         
Query: 134   gtgcctatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagtta 193
             ||||||||||||| |||||||| |||||||| || ||||| |||||||| ||||||||||
Sbjct: 23225 gtgcctatgtcatctccaagcatataagcaatacgtggttgtgggaccgtgttcgagtta 23284

                                                            
Query: 194   gtggtggagcatatggagggttttgtgattttgacactcattcaggt 240
             ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 23285 gtggtggtgcatatggagggttttgtgattttgacacccattcaggt 23331



 Score =  147 bits (74), Expect = 3e-32
 Identities = 137/158 (86%)
 Strand = Plus / Plus

                                                                         
Query: 253   ttgtcataccgtgatccgaacttgctgaaaacactagaggtctatgatgggactgcaaag 312
             ||||||||||||||||| || ||  ||||||||||||| || ||||||| ||| || |||
Sbjct: 23462 ttgtcataccgtgatccaaatttattgaaaacactagaagtttatgatgagacggccaag 23521

                                                                         
Query: 313   ttcctcagagaactagaggtagatgatgatgctctcacaaaagctattattggcaccata 372
             ||||| ||||| |||||  | |||||||||  ||||||||||||||||||||| ||||||
Sbjct: 23522 ttcctaagagagctagaaatggatgatgattgtctcacaaaagctattattggtaccata 23581

                                                   
Query: 373   ggggatgttgattcctatcagctaccagatgctaaagg 410
             || || ||||||||||| ||||| ||||||||||||||
Sbjct: 23582 ggtgacgttgattcctaccagctgccagatgctaaagg 23619



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                       
Query: 15    aagtgatccatggctctctcgattgccttctgttaatgaagc 56
             ||||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 22987 aagtgatccatggctttctcgattgccatctgttaacgaagc 23028
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>ref|XM_467920.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 675

 Score =  129 bits (65), Expect = 8e-27
 Identities = 116/133 (87%)
 Strand = Plus / Plus

                                                                       
Query: 278 tgaaaacactagaggtctatgatgggactgcaaagttcctcagagaactagaggtagatg 337
           ||||||||||||| || ||||||| ||| || |||||||| ||||| |||||  | ||||
Sbjct: 17  tgaaaacactagaagtttatgatgagacggccaagttcctaagagagctagaaatggatg 76

                                                                       
Query: 338 atgatgctctcacaaaagctattattggcaccataggggatgttgattcctatcagctac 397
           |||||  ||||||||||||||||||||| |||||||| || ||||||||||| ||||| |
Sbjct: 77  atgattgtctcacaaaagctattattggtaccataggtgacgttgattcctaccagctgc 136

                        
Query: 398 cagatgctaaagg 410
           |||||||||||||
Sbjct: 137 cagatgctaaagg 149
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>dbj|AK060417.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F01, full
           insert sequence
          Length = 675

 Score =  129 bits (65), Expect = 8e-27
 Identities = 116/133 (87%)
 Strand = Plus / Plus

                                                                       
Query: 278 tgaaaacactagaggtctatgatgggactgcaaagttcctcagagaactagaggtagatg 337
           ||||||||||||| || ||||||| ||| || |||||||| ||||| |||||  | ||||
Sbjct: 17  tgaaaacactagaagtttatgatgagacggccaagttcctaagagagctagaaatggatg 76

                                                                       
Query: 338 atgatgctctcacaaaagctattattggcaccataggggatgttgattcctatcagctac 397
           |||||  ||||||||||||||||||||| |||||||| || ||||||||||| ||||| |
Sbjct: 77  atgattgtctcacaaaagctattattggtaccataggtgacgttgattcctaccagctgc 136

                        
Query: 398 cagatgctaaagg 410
           |||||||||||||
Sbjct: 137 cagatgctaaagg 149
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>ref|NM_112804.3| Arabidopsis thaliana ATPREP1/ATZNMP; metalloendopeptidase AT3G19170
            (ATPREP1/ATZNMP) mRNA, complete cds
          Length = 3466

 Score =  101 bits (51), Expect = 2e-18
 Identities = 192/239 (80%)
 Strand = Plus / Plus

                                                                        
Query: 49   aatgaagccattgttatccctacacaggttaattatgttggaaaagctggaaacctatac 108
            |||||||||||||| || || || ||||| || |||||||||||||| || ||| |||||
Sbjct: 2725 aatgaagccattgtaataccaacccaggtaaactatgttggaaaagcgggtaacatatac 2784

                                                                        
Query: 109  caaagtggataccagctcaatggaagtgcctatgtcatatccaagcacataagcaacaca 168
               |  || ||  ||||  |||| ||||| ||||| ||||| ||||| || ||||| |||
Sbjct: 2785 agcaccgggtatgagcttgatggcagtgcgtatgttatatcaaagcatattagcaataca 2844

                                                                        
Query: 169  tggttatgggaccgcgttcgagttagtggtggagcatatggagggttttgtgattttgac 228
            ||||||||||| || ||||| || |||||||| ||||||||||| || |||||||| || 
Sbjct: 2845 tggttatgggatcgtgttcgtgtaagtggtggtgcatatggaggtttctgtgatttcgat 2904

                                                                       
Query: 229  actcattcaggtgtcttttcctatttgtcataccgtgatccgaacttgctgaaaacact 287
             | |||||||| || ||||| || || || ||||| ||||| |||||| |||| |||||
Sbjct: 2905 tcgcattcaggagtattttcttacttatcgtaccgggatccaaacttgttgaagacact 2963



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                     
Query: 346  ctcacaaaagctattattggcaccataggggatgttgattc 386
            ||||| |||||||||||||||||||| || |||||||||||
Sbjct: 3022 ctcactaaagctattattggcaccatcggtgatgttgattc 3062
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>gb|AY091051.1| Arabidopsis thaliana putative metalloprotease (At3g19170) mRNA,
            complete cds
          Length = 3475

 Score =  101 bits (51), Expect = 2e-18
 Identities = 192/239 (80%)
 Strand = Plus / Plus

                                                                        
Query: 49   aatgaagccattgttatccctacacaggttaattatgttggaaaagctggaaacctatac 108
            |||||||||||||| || || || ||||| || |||||||||||||| || ||| |||||
Sbjct: 2723 aatgaagccattgtaataccaacccaggtaaactatgttggaaaagcgggtaacatatac 2782

                                                                        
Query: 109  caaagtggataccagctcaatggaagtgcctatgtcatatccaagcacataagcaacaca 168
               |  || ||  ||||  |||| ||||| ||||| ||||| ||||| || ||||| |||
Sbjct: 2783 agcaccgggtatgagcttgatggcagtgcgtatgttatatcaaagcatattagcaataca 2842

                                                                        
Query: 169  tggttatgggaccgcgttcgagttagtggtggagcatatggagggttttgtgattttgac 228
            ||||||||||| || ||||| || |||||||| ||||||||||| || |||||||| || 
Sbjct: 2843 tggttatgggatcgtgttcgtgtaagtggtggtgcatatggaggtttctgtgatttcgat 2902

                                                                       
Query: 229  actcattcaggtgtcttttcctatttgtcataccgtgatccgaacttgctgaaaacact 287
             | |||||||| || ||||| || || || ||||| ||||| |||||| |||| |||||
Sbjct: 2903 tcgcattcaggagtattttcttacttatcgtaccgggatccaaacttgttgaagacact 2961



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                     
Query: 346  ctcacaaaagctattattggcaccataggggatgttgattc 386
            ||||| |||||||||||||||||||| || |||||||||||
Sbjct: 3020 ctcactaaagctattattggcaccatcggtgatgttgattc 3060
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>gb|AY090240.1| Arabidopsis thaliana AT3g19170/MVI11_8 mRNA, complete cds
          Length = 3463

 Score =  101 bits (51), Expect = 2e-18
 Identities = 192/239 (80%)
 Strand = Plus / Plus

                                                                        
Query: 49   aatgaagccattgttatccctacacaggttaattatgttggaaaagctggaaacctatac 108
            |||||||||||||| || || || ||||| || |||||||||||||| || ||| |||||
Sbjct: 2725 aatgaagccattgtaataccaacccaggtaaactatgttggaaaagcgggtaacatatac 2784

                                                                        
Query: 109  caaagtggataccagctcaatggaagtgcctatgtcatatccaagcacataagcaacaca 168
               |  || ||  ||||  |||| ||||| ||||| ||||| ||||| || ||||| |||
Sbjct: 2785 agcaccgggtatgagcttgatggcagtgcgtatgttatatcaaagcatattagcaataca 2844

                                                                        
Query: 169  tggttatgggaccgcgttcgagttagtggtggagcatatggagggttttgtgattttgac 228
            ||||||||||| || ||||| || |||||||| ||||||||||| || |||||||| || 
Sbjct: 2845 tggttatgggatcgtgttcgtgtaagtggtggtgcatatggaggtttctgtgatttcgat 2904

                                                                       
Query: 229  actcattcaggtgtcttttcctatttgtcataccgtgatccgaacttgctgaaaacact 287
             | |||||||| || ||||| || || || ||||| ||||| |||||| |||| |||||
Sbjct: 2905 tcgcattcaggagtattttcttacttatcgtaccgggatccaaacttgttgaagacact 2963



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                     
Query: 346  ctcacaaaagctattattggcaccataggggatgttgattc 386
            ||||| |||||||||||||||||||| || |||||||||||
Sbjct: 3022 ctcactaaagctattattggcaccatcggtgatgttgattc 3062
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>gb|BT006362.1| Arabidopsis thaliana At3g19170/MVI11_8 gene, complete cds
          Length = 3243

 Score =  101 bits (51), Expect = 2e-18
 Identities = 192/239 (80%)
 Strand = Plus / Plus

                                                                        
Query: 49   aatgaagccattgttatccctacacaggttaattatgttggaaaagctggaaacctatac 108
            |||||||||||||| || || || ||||| || |||||||||||||| || ||| |||||
Sbjct: 2659 aatgaagccattgtaataccaacccaggtaaactatgttggaaaagcgggtaacatatac 2718

                                                                        
Query: 109  caaagtggataccagctcaatggaagtgcctatgtcatatccaagcacataagcaacaca 168
               |  || ||  ||||  |||| ||||| ||||| ||||| ||||| || ||||| |||
Sbjct: 2719 agcaccgggtatgagcttgatggcagtgcgtatgttatatcaaagcatattagcaataca 2778

                                                                        
Query: 169  tggttatgggaccgcgttcgagttagtggtggagcatatggagggttttgtgattttgac 228
            ||||||||||| || ||||| || |||||||| ||||||||||| || |||||||| || 
Sbjct: 2779 tggttatgggatcgtgttcgtgtaagtggtggtgcatatggaggtttctgtgatttcgat 2838

                                                                       
Query: 229  actcattcaggtgtcttttcctatttgtcataccgtgatccgaacttgctgaaaacact 287
             | |||||||| || ||||| || || || ||||| ||||| |||||| |||| |||||
Sbjct: 2839 tcgcattcaggagtattttcttacttatcgtaccgggatccaaacttgttgaagacact 2897



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                     
Query: 346  ctcacaaaagctattattggcaccataggggatgttgattc 386
            ||||| |||||||||||||||||||| || |||||||||||
Sbjct: 2956 ctcactaaagctattattggcaccatcggtgatgttgattc 2996
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>gb|BT002372.1| Arabidopsis thaliana clone U19043 putative metalloprotease
            (At3g19170) mRNA, complete cds
          Length = 3274

 Score =  101 bits (51), Expect = 2e-18
 Identities = 192/239 (80%)
 Strand = Plus / Plus

                                                                        
Query: 49   aatgaagccattgttatccctacacaggttaattatgttggaaaagctggaaacctatac 108
            |||||||||||||| || || || ||||| || |||||||||||||| || ||| |||||
Sbjct: 2659 aatgaagccattgtaataccaacccaggtaaactatgttggaaaagcgggtaacatatac 2718

                                                                        
Query: 109  caaagtggataccagctcaatggaagtgcctatgtcatatccaagcacataagcaacaca 168
               |  || ||  ||||  |||| ||||| ||||| ||||| ||||| || ||||| |||
Sbjct: 2719 agcaccgggtatgagcttgatggcagtgcgtatgttatatcaaagcatattagcaataca 2778

                                                                        
Query: 169  tggttatgggaccgcgttcgagttagtggtggagcatatggagggttttgtgattttgac 228
            ||||||||||| || ||||| || |||||||| ||||||||||| || |||||||| || 
Sbjct: 2779 tggttatgggatcgtgttcgtgtaagtggtggtgcatatggaggtttctgtgatttcgat 2838

                                                                       
Query: 229  actcattcaggtgtcttttcctatttgtcataccgtgatccgaacttgctgaaaacact 287
             | |||||||| || ||||| || || || ||||| ||||| |||||| |||| |||||
Sbjct: 2839 tcgcattcaggagtattttcttacttatcgtaccgggatccaaacttgttgaagacact 2897



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                     
Query: 346  ctcacaaaagctattattggcaccataggggatgttgattc 386
            ||||| |||||||||||||||||||| || |||||||||||
Sbjct: 2956 ctcactaaagctattattggcaccatcggtgatgttgattc 2996
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>dbj|AP000419.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVI11
          Length = 81875

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                         
Query: 128   atggaagtgcctatgtcatatccaagcacataagcaacacatggttatgggaccgcgttc 187
             |||| ||||| ||||| ||||| ||||| || ||||| |||||||||||||| || ||||
Sbjct: 21444 atggcagtgcgtatgttatatcaaagcatattagcaatacatggttatgggatcgtgttc 21385

                                                  
Query: 188   gagttagtggtggagcatatggagggttttgtgattt 224
             | || |||||||| ||||||||||| || ||||||||
Sbjct: 21384 gtgtaagtggtggtgcatatggaggtttctgtgattt 21348



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 346   ctcacaaaagctattattggcaccataggggatgttgattc 386
             ||||| |||||||||||||||||||| || |||||||||||
Sbjct: 21141 ctcactaaagctattattggcaccatcggtgatgttgattc 21101
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>ref|NM_180631.1| Arabidopsis thaliana ATPREP2; metalloendopeptidase AT1G49630
            (ATPREP2) transcript variant AT1G49630.2 mRNA, complete
            cds
          Length = 3432

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                        
Query: 139  tatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagttagtggt 198
            ||||| ||||| ||||| || || ||||||||||||||||| || ||||| || ||||||
Sbjct: 2791 tatgttatatcaaagcatattagtaacacatggttatgggatcgtgttcgtgtaagtggt 2850

                                         
Query: 199  ggagcatatggagggttttgtgattttga 227
            || ||||||||||| |  |||||||||||
Sbjct: 2851 ggtgcatatggaggttcctgtgattttga 2879
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>ref|NM_180630.1| Arabidopsis thaliana ATPREP2; metalloendopeptidase AT1G49630
            (ATPREP2) transcript variant AT1G49630.1 mRNA, complete
            cds
          Length = 3582

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                        
Query: 139  tatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagttagtggt 198
            ||||| ||||| ||||| || || ||||||||||||||||| || ||||| || ||||||
Sbjct: 2791 tatgttatatcaaagcatattagtaacacatggttatgggatcgtgttcgtgtaagtggt 2850

                                         
Query: 199  ggagcatatggagggttttgtgattttga 227
            || ||||||||||| |  |||||||||||
Sbjct: 2851 ggtgcatatggaggttcctgtgattttga 2879
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>ref|NM_103851.3| Arabidopsis thaliana ATPREP2; metalloendopeptidase AT1G49630
            (ATPREP2) transcript variant AT1G49630.3 mRNA, complete
            cds
          Length = 3576

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                        
Query: 139  tatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagttagtggt 198
            ||||| ||||| ||||| || || ||||||||||||||||| || ||||| || ||||||
Sbjct: 2791 tatgttatatcaaagcatattagtaacacatggttatgggatcgtgttcgtgtaagtggt 2850

                                         
Query: 199  ggagcatatggagggttttgtgattttga 227
            || ||||||||||| |  |||||||||||
Sbjct: 2851 ggtgcatatggaggttcctgtgattttga 2879
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>gb|AY074305.1| Arabidopsis thaliana putative hydrogenase protein (At1g49630) mRNA,
            complete cds
          Length = 3598

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                        
Query: 139  tatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagttagtggt 198
            ||||| ||||| ||||| || || ||||||||||||||||| || ||||| || ||||||
Sbjct: 2791 tatgttatatcaaagcatattagtaacacatggttatgggatcgtgttcgtgtaagtggt 2850

                                         
Query: 199  ggagcatatggagggttttgtgattttga 227
            || ||||||||||| |  |||||||||||
Sbjct: 2851 ggtgcatatggaggttcctgtgattttga 2879
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>gb|BT004376.1| Arabidopsis thaliana clone U19879 putative hydrogenase (At1g49630)
            mRNA, complete cds
          Length = 3274

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                        
Query: 139  tatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagttagtggt 198
            ||||| ||||| ||||| || || ||||||||||||||||| || ||||| || ||||||
Sbjct: 2746 tatgttatatcaaagcatattagtaacacatggttatgggatcgtgttcgtgtaagtggt 2805

                                         
Query: 199  ggagcatatggagggttttgtgattttga 227
            || ||||||||||| |  |||||||||||
Sbjct: 2806 ggtgcatatggaggttcctgtgattttga 2834
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>gb|AC011807.4|AC011807 Arabidopsis thaliana chromosome I BAC F14J22 genomic sequence, complete
             sequence
          Length = 104679

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                         
Query: 139   tatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagttagtggt 198
             ||||| ||||| ||||| || || ||||||||||||||||| || ||||| || ||||||
Sbjct: 67499 tatgttatatcaaagcatattagtaacacatggttatgggatcgtgttcgtgtaagtggt 67558

                                          
Query: 199   ggagcatatggagggttttgtgattttga 227
             || ||||||||||| |  |||||||||||
Sbjct: 67559 ggtgcatatggaggttcctgtgattttga 67587
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>gb|AC102103.10| Mus musculus chromosome 15, clone RP23-82K1, complete sequence
          Length = 237423

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   actcattcaggtgtcttttc 248
             ||||||||||||||||||||
Sbjct: 81162 actcattcaggtgtcttttc 81143
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>gb|BC036982.1| Mus musculus thyrotroph embryonic factor, transcript variant 1, mRNA
            (cDNA clone MGC:46858 IMAGE:4976241), complete cds
          Length = 4222

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  actcattcaggtgtcttttc 248
            ||||||||||||||||||||
Sbjct: 3460 actcattcaggtgtcttttc 3441
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>gb|BC017689.1| Mus musculus thyrotroph embryonic factor, transcript variant 2, mRNA
            (cDNA clone MGC:19233 IMAGE:4242534), complete cds
          Length = 4018

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  actcattcaggtgtcttttc 248
            ||||||||||||||||||||
Sbjct: 3258 actcattcaggtgtcttttc 3239
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>ref|NM_153484.1| Mus musculus thyrotroph embryonic factor (Tef), transcript variant 2,
            mRNA
          Length = 4018

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  actcattcaggtgtcttttc 248
            ||||||||||||||||||||
Sbjct: 3258 actcattcaggtgtcttttc 3239
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>ref|NM_017376.2| Mus musculus thyrotroph embryonic factor (Tef), transcript variant 1,
            mRNA
          Length = 4222

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  actcattcaggtgtcttttc 248
            ||||||||||||||||||||
Sbjct: 3460 actcattcaggtgtcttttc 3441
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>gb|AY540631.1| Mus musculus thyrotroph embryonic factor alpha isoform (Tef) mRNA,
            complete cds, alternatively spliced
          Length = 4064

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  actcattcaggtgtcttttc 248
            ||||||||||||||||||||
Sbjct: 3480 actcattcaggtgtcttttc 3461
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>gb|AC005486.2| Homo sapiens PAC clone RP5-1070G24 from 7, complete sequence
          Length = 157075

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 52     gaagccattgttatccctacacag 75
              ||||| ||||||||||||||||||
Sbjct: 155215 gaagcaattgttatccctacacag 155238
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>gb|AC004413.2| Homo sapiens PAC clone RP4-650P9 from 7, complete sequence
          Length = 114827

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 42     ttctgttaatgaagccattgttat 65
              |||||||||||||||||| |||||
Sbjct: 106110 ttctgttaatgaagccatagttat 106087
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>emb|BX119976.8| Zebrafish DNA sequence from clone CH211-196F5 in linkage group 20
              Contains the gene for a novel protein (zgc:63952), the 3'
              end of the gene for a novel protein similar to mouse and
              human importin 4 (IPO4), three genes for transposase, a
              novel gene and six CpG islands, complete sequence
          Length = 190000

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     aaagctggaaacctatacca 110
              ||||||||||||||||||||
Sbjct: 144259 aaagctggaaacctatacca 144240
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>dbj|AK141606.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched
            library, clone:C630043H05 product:thyrotroph embryonic
            factor, full insert sequence
          Length = 4071

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  actcattcaggtgtcttttc 248
            ||||||||||||||||||||
Sbjct: 3323 actcattcaggtgtcttttc 3304
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>dbj|AK147965.1| Mus musculus melanocyte cDNA, RIKEN full-length enriched library,
            clone:G270119N11 product:thyrotroph embryonic factor,
            full insert sequence
          Length = 4175

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  actcattcaggtgtcttttc 248
            ||||||||||||||||||||
Sbjct: 3430 actcattcaggtgtcttttc 3411
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>dbj|AK154472.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630037E11
            product:thyrotroph embryonic factor, full insert sequence
          Length = 4186

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  actcattcaggtgtcttttc 248
            ||||||||||||||||||||
Sbjct: 3441 actcattcaggtgtcttttc 3422
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>gb|AC158970.3| Mus musculus chromosome 15, clone RP24-186A9, complete sequence
          Length = 208509

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   actcattcaggtgtcttttc 248
             ||||||||||||||||||||
Sbjct: 27794 actcattcaggtgtcttttc 27813
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>dbj|AK009518.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
           library, clone:2310028D20 product:unclassifiable, full
           insert sequence
          Length = 1738

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 actcattcaggtgtcttttc 248
           ||||||||||||||||||||
Sbjct: 993 actcattcaggtgtcttttc 974
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>gb|BC023410.1| Mus musculus thyrotroph embryonic factor, mRNA (cDNA clone
            IMAGE:5054763), partial cds
          Length = 2688

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  actcattcaggtgtcttttc 248
            ||||||||||||||||||||
Sbjct: 1926 actcattcaggtgtcttttc 1907
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>dbj|AK010205.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
           library, clone:2310076L22 product:unclassifiable, full
           insert sequence
          Length = 813

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 actcattcaggtgtcttttc 248
           ||||||||||||||||||||
Sbjct: 68  actcattcaggtgtcttttc 49
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>dbj|AK042146.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630063M24 product:thyrotroph embryonic
            factor, full insert sequence
          Length = 4401

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  actcattcaggtgtcttttc 248
            ||||||||||||||||||||
Sbjct: 3656 actcattcaggtgtcttttc 3637
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>dbj|AK085437.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
           library, clone:D630024P09 product:unclassifiable, full
           insert sequence
          Length = 1388

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 actcattcaggtgtcttttc 248
           ||||||||||||||||||||
Sbjct: 643 actcattcaggtgtcttttc 624


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,392,193
Number of Sequences: 3902068
Number of extensions: 3392193
Number of successful extensions: 62723
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62658
Number of HSP's gapped (non-prelim): 65
length of query: 410
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 388
effective length of database: 17,147,199,772
effective search space: 6653113511536
effective search space used: 6653113511536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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