ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal18p21 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK071277.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082M08, full insert sequence Length = 1609 Score = 135 bits (68), Expect = 3e-29 Identities = 95/104 (91%) Strand = Plus / Plus Query: 1 gaagcccaccctcggaggccagcggattaagacccgcaagcggaatatagcagctccttt 60 ||||||||| || |||||||||||||||||||||||||| |||||||| || |||||||| Sbjct: 153 gaagcccactcttggaggccagcggattaagacccgcaaacggaatattgctgctccttt 212 Query: 61 ggatccttcgtcgttctctgatgcaattgtccagatttatctgg 104 ||| ||| | || ||||||||||||||||||||||||||||||| Sbjct: 213 ggaccctgcatcattctctgatgcaattgtccagatttatctgg 256
>gb|AY103565.1| Zea mays PCO067369 mRNA sequence Length = 1771 Score = 127 bits (64), Expect = 7e-27 Identities = 94/104 (90%) Strand = Plus / Plus Query: 1 gaagcccaccctcggaggccagcggattaagacccgcaagcggaatatagcagctccttt 60 ||||||||| || |||||| |||||||||||||||||||||||| || ||||||||||| Sbjct: 164 gaagcccactcttggaggcacgcggattaagacccgcaagcggaacattgcagctccttt 223 Query: 61 ggatccttcgtcgttctctgatgcaattgtccagatttatctgg 104 ||| ||| | || ||||||||||||||||||||||||||||||| Sbjct: 224 ggaccctgcatcattctctgatgcaattgtccagatttatctgg 267
>gb|AC148235.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0036H01, complete sequence Length = 182504 Score = 123 bits (62), Expect = 1e-25 Identities = 83/90 (92%) Strand = Plus / Plus Query: 15 gaggccagcggattaagacccgcaagcggaatatagcagctcctttggatccttcgtcgt 74 ||||||||||||||||||||||||| |||||||| || ||||||||||| ||| | || | Sbjct: 88708 gaggccagcggattaagacccgcaaacggaatattgctgctcctttggaccctgcatcat 88767 Query: 75 tctctgatgcaattgtccagatttatctgg 104 |||||||||||||||||||||||||||||| Sbjct: 88768 tctctgatgcaattgtccagatttatctgg 88797
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 123 bits (62), Expect = 1e-25 Identities = 83/90 (92%) Strand = Plus / Minus Query: 15 gaggccagcggattaagacccgcaagcggaatatagcagctcctttggatccttcgtcgt 74 ||||||||||||||||||||||||| |||||||| || ||||||||||| ||| | || | Sbjct: 12079364 gaggccagcggattaagacccgcaaacggaatattgctgctcctttggaccctgcatcat 12079305 Query: 75 tctctgatgcaattgtccagatttatctgg 104 |||||||||||||||||||||||||||||| Sbjct: 12079304 tctctgatgcaattgtccagatttatctgg 12079275
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 123 bits (62), Expect = 1e-25 Identities = 83/90 (92%) Strand = Plus / Minus Query: 15 gaggccagcggattaagacccgcaagcggaatatagcagctcctttggatccttcgtcgt 74 ||||||||||||||||||||||||| |||||||| || ||||||||||| ||| | || | Sbjct: 12158671 gaggccagcggattaagacccgcaaacggaatattgctgctcctttggaccctgcatcat 12158612 Query: 75 tctctgatgcaattgtccagatttatctgg 104 |||||||||||||||||||||||||||||| Sbjct: 12158611 tctctgatgcaattgtccagatttatctgg 12158582
>gb|AY596583.1| Saccharum officinarum clone SCBGLR1003E06, complete sequence Length = 1627 Score = 119 bits (60), Expect = 2e-24 Identities = 93/104 (89%) Strand = Plus / Minus Query: 1 gaagcccaccctcggaggccagcggattaagacccgcaagcggaatatagcagctccttt 60 ||||||||| || |||||| |||||||||||||||||||||||| || ||||||||||| Sbjct: 1541 gaagcccactcttggaggcacgcggattaagacccgcaagcggaacattgcagctccttt 1482 Query: 61 ggatccttcgtcgttctctgatgcaattgtccagatttatctgg 104 ||| ||| | || ||||||||||||||||| ||||||||||||| Sbjct: 1481 ggaccctgcatcattctctgatgcaattgttcagatttatctgg 1438
>ref|NM_123014.2| Arabidopsis thaliana translation initiation factor AT5G36230 mRNA, complete cds Length = 1600 Score = 61.9 bits (31), Expect = 3e-07 Identities = 79/95 (83%) Strand = Plus / Plus Query: 5 cccaccctcggaggccagcggattaagacccgcaagcggaatatagcagctcctttggat 64 ||||| |||||||| |||||||||||||||||| |||||||| || |||||| |||| Sbjct: 154 cccactctcggaggtacgcggattaagacccgcaaacggaatattgctgctcctctggac 213 Query: 65 ccttcgtcgttctctgatgcaattgtccagattta 99 ||| | | || ||||||||| | ||||||||||| Sbjct: 214 cctgcagccttttctgatgcagtggtccagattta 248
>gb|AY136473.1| Arabidopsis thaliana putative protein (At5g36230) mRNA, complete cds Length = 1594 Score = 61.9 bits (31), Expect = 3e-07 Identities = 79/95 (83%) Strand = Plus / Plus Query: 5 cccaccctcggaggccagcggattaagacccgcaagcggaatatagcagctcctttggat 64 ||||| |||||||| |||||||||||||||||| |||||||| || |||||| |||| Sbjct: 150 cccactctcggaggtacgcggattaagacccgcaaacggaatattgctgctcctctggac 209 Query: 65 ccttcgtcgttctctgatgcaattgtccagattta 99 ||| | | || ||||||||| | ||||||||||| Sbjct: 210 cctgcagccttttctgatgcagtggtccagattta 244
>gb|AY057642.1| Arabidopsis thaliana AT5g36230/T30G6_9 mRNA, complete cds Length = 1611 Score = 61.9 bits (31), Expect = 3e-07 Identities = 79/95 (83%) Strand = Plus / Plus Query: 5 cccaccctcggaggccagcggattaagacccgcaagcggaatatagcagctcctttggat 64 ||||| |||||||| |||||||||||||||||| |||||||| || |||||| |||| Sbjct: 153 cccactctcggaggtacgcggattaagacccgcaaacggaatattgctgctcctctggac 212 Query: 65 ccttcgtcgttctctgatgcaattgtccagattta 99 ||| | | || ||||||||| | ||||||||||| Sbjct: 213 cctgcagccttttctgatgcagtggtccagattta 247
>dbj|AB026661.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:T30G6 Length = 76994 Score = 60.0 bits (30), Expect = 1e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 22 gcggattaagacccgcaagcggaatatagcagctcctttggatccttcgtcgttctctga 81 |||||||||||||||||| |||||||| || |||||| |||| ||| | | || ||||| Sbjct: 28730 gcggattaagacccgcaaacggaatattgctgctcctctggaccctgcagccttttctga 28789 Query: 82 tgcaattgtccagattta 99 |||| | ||||||||||| Sbjct: 28790 tgcagtggtccagattta 28807
>ref|NM_105195.2| Arabidopsis thaliana translation initiation factor AT1G65220 mRNA, complete cds Length = 1500 Score = 56.0 bits (28), Expect = 2e-05 Identities = 85/104 (81%) Strand = Plus / Plus Query: 1 gaagcccaccctcggaggccagcggattaagacccgcaagcggaatatagcagctccttt 60 ||||||||| |||||||| |||||||||||||||||| ||||||| || |||||| | Sbjct: 108 gaagcccactctcggaggtacgcggattaagacccgcaaaaggaatattgctgctcctct 167 Query: 61 ggatccttcgtcgttctctgatgcaattgtccagatttatctgg 104 || ||| | | || ||||||||| | || ||||||||||||| Sbjct: 168 cgaccctgctgctttttctgatgcactagttcagatttatctgg 211
>gb|AY056181.1| Arabidopsis thaliana unknown protein (At1g65220) mRNA, complete cds Length = 1477 Score = 56.0 bits (28), Expect = 2e-05 Identities = 85/104 (81%) Strand = Plus / Plus Query: 1 gaagcccaccctcggaggccagcggattaagacccgcaagcggaatatagcagctccttt 60 ||||||||| |||||||| |||||||||||||||||| ||||||| || |||||| | Sbjct: 85 gaagcccactctcggaggtacgcggattaagacccgcaaaaggaatattgctgctcctct 144 Query: 61 ggatccttcgtcgttctctgatgcaattgtccagatttatctgg 104 || ||| | | || ||||||||| | || ||||||||||||| Sbjct: 145 cgaccctgctgctttttctgatgcactagttcagatttatctgg 188
>gb|BT006174.1| Arabidopsis thaliana clone RAFL09-89-P13 (R20012) unknown protein (At1g65220) mRNA, complete cds Length = 1469 Score = 56.0 bits (28), Expect = 2e-05 Identities = 85/104 (81%) Strand = Plus / Plus Query: 1 gaagcccaccctcggaggccagcggattaagacccgcaagcggaatatagcagctccttt 60 ||||||||| |||||||| |||||||||||||||||| ||||||| || |||||| | Sbjct: 85 gaagcccactctcggaggtacgcggattaagacccgcaaaaggaatattgctgctcctct 144 Query: 61 ggatccttcgtcgttctctgatgcaattgtccagatttatctgg 104 || ||| | | || ||||||||| | || ||||||||||||| Sbjct: 145 cgaccctgctgctttttctgatgcactagttcagatttatctgg 188
>emb|BX814895.1|CNS0AEMB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS17ZA05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1437 Score = 56.0 bits (28), Expect = 2e-05 Identities = 85/104 (81%) Strand = Plus / Plus Query: 1 gaagcccaccctcggaggccagcggattaagacccgcaagcggaatatagcagctccttt 60 ||||||||| |||||||| |||||||||||||||||| ||||||| || |||||| | Sbjct: 83 gaagcccactctcggaggtacgcggattaagacccgcaaaaggaatattgctgctcctct 142 Query: 61 ggatccttcgtcgttctctgatgcaattgtccagatttatctgg 104 || ||| | | || ||||||||| | || ||||||||||||| Sbjct: 143 cgaccctgctgctttttctgatgcactagttcagatttatctgg 186
>gb|AY086089.1| Arabidopsis thaliana clone 21223 mRNA, complete sequence Length = 1456 Score = 56.0 bits (28), Expect = 2e-05 Identities = 85/104 (81%) Strand = Plus / Plus Query: 1 gaagcccaccctcggaggccagcggattaagacccgcaagcggaatatagcagctccttt 60 ||||||||| |||||||| |||||||||||||||||| ||||||| || |||||| | Sbjct: 83 gaagcccactctcggaggtacgcggattaagacccgcaaaaggaatattgctgctcctct 142 Query: 61 ggatccttcgtcgttctctgatgcaattgtccagatttatctgg 104 || ||| | | || ||||||||| | || ||||||||||||| Sbjct: 143 cgaccctgctgctttttctgatgcactagttcagatttatctgg 186
>gb|AC007230.2|T23K8 Arabidopsis thaliana chromosome 1 BAC T23K8 sequence, complete sequence Length = 53090 Score = 46.1 bits (23), Expect = 0.020 Identities = 68/83 (81%) Strand = Plus / Plus Query: 22 gcggattaagacccgcaagcggaatatagcagctcctttggatccttcgtcgttctctga 81 |||||||||||||||||| ||||||| || |||||| | || ||| | | || ||||| Sbjct: 45804 gcggattaagacccgcaaaaggaatattgctgctcctctcgaccctgctgctttttctga 45863 Query: 82 tgcaattgtccagatttatctgg 104 |||| | || ||||||||||||| Sbjct: 45864 tgcactagttcagatttatctgg 45886
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 42.1 bits (21), Expect = 0.30 Identities = 21/21 (100%) Strand = Plus / Plus Query: 27 ttaagacccgcaagcggaata 47 ||||||||||||||||||||| Sbjct: 1871901 ttaagacccgcaagcggaata 1871921
>gb|AC148171.16| Medicago truncatula clone mth2-30a2, complete sequence Length = 158384 Score = 40.1 bits (20), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 gcggattaagacccgcaagcggaa 45 |||||||||||||||||| ||||| Sbjct: 58057 gcggattaagacccgcaaacggaa 58034
>emb|AL035414.30|HS667H12 Human DNA sequence from clone RP4-667H12 on chromosome 1q32.1-41 Contains a novel gene, the SERTAD4 gene for SERTA domain containing protein 4, a processed pseudogene similar to putative tumor suppressor ST13, a processed pseudogene similar to ribonuclease H1 (RNASEH1), the 5' end of the gene for melanoma antigen recognized by T cells 2 (MART2) protein and a CpG island, complete sequence Length = 131239 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 gcagctcctttggatcctt 68 ||||||||||||||||||| Sbjct: 95270 gcagctcctttggatcctt 95288 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 514,573 Number of Sequences: 3902068 Number of extensions: 514573 Number of successful extensions: 31608 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31557 Number of HSP's gapped (non-prelim): 45 length of query: 106 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 85 effective length of database: 17,151,101,840 effective search space: 1457843656400 effective search space used: 1457843656400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
