ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal19e23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genomic sequence, complete sequence Length = 157397 Score = 218 bits (110), Expect = 2e-53 Identities = 225/262 (85%), Gaps = 6/262 (2%) Strand = Plus / Minus Query: 263 acggtgacgcacacgcgcacgctcaccaacgtgggcgcggcgggcacgtacaaggtggac 322 ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| | Sbjct: 155189 acggtgacgcacaggcgcacgctcaccaacgtcggcgcggcggggacgtacaaggtgagc 155130 Query: 323 gcctcggtgtccatgtccggggtgaccgtcgacgtgaagccgacggagctggagttcacg 382 || | | ||||| | || ||| |||| | |||| ||||||| ||||||| ||||||| Sbjct: 155129 gcggccg---ccatgcctggcgtggccgtggccgtggagccgaccgagctggcgttcacg 155073 Query: 383 gcgatcggcgagaagaagagctacacggtgagcttcacggcggccaagtcgcagccgtcg 442 || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 155072 tcggccggcgagaagaagagctacacggtgagcttcacggcg---aagtcgcagccgtcg 155016 Query: 443 ggcaccgccgggttcggccggctggtgtggtcggacggtaagcacaccgtggcgagtccg 502 ||||||||||| |||||||| || || ||||||||||| ||||||| ||||||||| ||| Sbjct: 155015 ggcaccgccggattcggccgcctcgtctggtcggacggcaagcacagcgtggcgagcccg 154956 Query: 503 atagcgttaacttggacatgat 524 || || || || |||||||||| Sbjct: 154955 atggcatttacgtggacatgat 154934 Score = 198 bits (100), Expect = 1e-47 Identities = 199/232 (85%) Strand = Plus / Minus Query: 2 acgccgttcgactacggcgccgggcacgtggacccgacgcgcgcggtggagccggggctc 61 ||||||||||||||||||||||| ||||| |||||| | |||| || || ||||| ||| Sbjct: 155459 acgccgttcgactacggcgccggccacgtcgacccggccagcgccgtcgacccgggactc 155400 Query: 62 gtctacgacctcggcaccggcgactacgtggacttcctgtgcgcgctcaagtacacgcct 121 ||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||| | Sbjct: 155399 gtctacgacctcggcaccgccgactacgtcgacttcctctgcgcgctcaactacacgtcc 155340 Query: 122 aacatgatcgccgcgctggcgcggagcaaggcctacgggtgcgccgcgaacaagacctac 181 | |||||||||||| |||||||||||||| |||||| ||| | | | |||| ||||| Sbjct: 155339 accatgatcgccgccgtggcgcggagcaagagctacggctgcacggagggcaaggcctac 155280 Query: 182 tccgtctccaacctcaactacccgtccttttccgtggcatactccacggcga 233 ||||| | ||||||||||||||||||||| ||||||| ||||| ||||||| Sbjct: 155279 tccgtgtacaacctcaactacccgtccttcgccgtggcgtactcgacggcga 155228
>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete sequence Length = 145590 Score = 218 bits (110), Expect = 2e-53 Identities = 225/262 (85%), Gaps = 6/262 (2%) Strand = Plus / Plus Query: 263 acggtgacgcacacgcgcacgctcaccaacgtgggcgcggcgggcacgtacaaggtggac 322 ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| | Sbjct: 108204 acggtgacgcacaggcgcacgctcaccaacgtcggcgcggcggggacgtacaaggtgagc 108263 Query: 323 gcctcggtgtccatgtccggggtgaccgtcgacgtgaagccgacggagctggagttcacg 382 || | | ||||| | || ||| |||| | |||| ||||||| ||||||| ||||||| Sbjct: 108264 gcggccg---ccatgcctggcgtggccgtggccgtggagccgaccgagctggcgttcacg 108320 Query: 383 gcgatcggcgagaagaagagctacacggtgagcttcacggcggccaagtcgcagccgtcg 442 || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 108321 tcggccggcgagaagaagagctacacggtgagcttcacggcg---aagtcgcagccgtcg 108377 Query: 443 ggcaccgccgggttcggccggctggtgtggtcggacggtaagcacaccgtggcgagtccg 502 ||||||||||| |||||||| || || ||||||||||| ||||||| ||||||||| ||| Sbjct: 108378 ggcaccgccggattcggccgcctcgtctggtcggacggcaagcacagcgtggcgagcccg 108437 Query: 503 atagcgttaacttggacatgat 524 || || || || |||||||||| Sbjct: 108438 atggcatttacgtggacatgat 108459 Score = 198 bits (100), Expect = 1e-47 Identities = 199/232 (85%) Strand = Plus / Plus Query: 2 acgccgttcgactacggcgccgggcacgtggacccgacgcgcgcggtggagccggggctc 61 ||||||||||||||||||||||| ||||| |||||| | |||| || || ||||| ||| Sbjct: 107934 acgccgttcgactacggcgccggccacgtcgacccggccagcgccgtcgacccgggactc 107993 Query: 62 gtctacgacctcggcaccggcgactacgtggacttcctgtgcgcgctcaagtacacgcct 121 ||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||| | Sbjct: 107994 gtctacgacctcggcaccgccgactacgtcgacttcctctgcgcgctcaactacacgtcc 108053 Query: 122 aacatgatcgccgcgctggcgcggagcaaggcctacgggtgcgccgcgaacaagacctac 181 | |||||||||||| |||||||||||||| |||||| ||| | | | |||| ||||| Sbjct: 108054 accatgatcgccgccgtggcgcggagcaagagctacggctgcacggagggcaaggcctac 108113 Query: 182 tccgtctccaacctcaactacccgtccttttccgtggcatactccacggcga 233 ||||| | ||||||||||||||||||||| ||||||| ||||| ||||||| Sbjct: 108114 tccgtgtacaacctcaactacccgtccttcgccgtggcgtactcgacggcga 108165
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 218 bits (110), Expect = 2e-53 Identities = 225/262 (85%), Gaps = 6/262 (2%) Strand = Plus / Plus Query: 263 acggtgacgcacacgcgcacgctcaccaacgtgggcgcggcgggcacgtacaaggtggac 322 ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| | Sbjct: 22512957 acggtgacgcacaggcgcacgctcaccaacgtcggcgcggcggggacgtacaaggtgagc 22513016 Query: 323 gcctcggtgtccatgtccggggtgaccgtcgacgtgaagccgacggagctggagttcacg 382 || | | ||||| | || ||| |||| | |||| ||||||| ||||||| ||||||| Sbjct: 22513017 gcggccg---ccatgcctggcgtggccgtggccgtggagccgaccgagctggcgttcacg 22513073 Query: 383 gcgatcggcgagaagaagagctacacggtgagcttcacggcggccaagtcgcagccgtcg 442 || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 22513074 tcggccggcgagaagaagagctacacggtgagcttcacggcg---aagtcgcagccgtcg 22513130 Query: 443 ggcaccgccgggttcggccggctggtgtggtcggacggtaagcacaccgtggcgagtccg 502 ||||||||||| |||||||| || || ||||||||||| ||||||| ||||||||| ||| Sbjct: 22513131 ggcaccgccggattcggccgcctcgtctggtcggacggcaagcacagcgtggcgagcccg 22513190 Query: 503 atagcgttaacttggacatgat 524 || || || || |||||||||| Sbjct: 22513191 atggcatttacgtggacatgat 22513212 Score = 198 bits (100), Expect = 1e-47 Identities = 199/232 (85%) Strand = Plus / Plus Query: 2 acgccgttcgactacggcgccgggcacgtggacccgacgcgcgcggtggagccggggctc 61 ||||||||||||||||||||||| ||||| |||||| | |||| || || ||||| ||| Sbjct: 22512687 acgccgttcgactacggcgccggccacgtcgacccggccagcgccgtcgacccgggactc 22512746 Query: 62 gtctacgacctcggcaccggcgactacgtggacttcctgtgcgcgctcaagtacacgcct 121 ||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||| | Sbjct: 22512747 gtctacgacctcggcaccgccgactacgtcgacttcctctgcgcgctcaactacacgtcc 22512806 Query: 122 aacatgatcgccgcgctggcgcggagcaaggcctacgggtgcgccgcgaacaagacctac 181 | |||||||||||| |||||||||||||| |||||| ||| | | | |||| ||||| Sbjct: 22512807 accatgatcgccgccgtggcgcggagcaagagctacggctgcacggagggcaaggcctac 22512866 Query: 182 tccgtctccaacctcaactacccgtccttttccgtggcatactccacggcga 233 ||||| | ||||||||||||||||||||| ||||||| ||||| ||||||| Sbjct: 22512867 tccgtgtacaacctcaactacccgtccttcgccgtggcgtactcgacggcga 22512918 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 388 cggcgagaagaagagctacacggtgagcttcacggcggcc 427 |||||||||| |||||||||||||||||||| |||||||| Sbjct: 31184508 cggcgagaagcagagctacacggtgagcttcgcggcggcc 31184469 Score = 60.0 bits (30), Expect = 8e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 44 gcggtggagccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgc 103 |||||||| ||||| |||||||||||| ||| | ||| ||||||||| |||||||| ||| Sbjct: 31184834 gcggtggatccgggcctcgtctacgacatcgccgccgccgactacgtcgacttcctctgc 31184775 Query: 104 gc 105 || Sbjct: 31184774 gc 31184773 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 6 cgttcgactacggcgccgggcacgtggacccgacgcgcgcggtggagccggggctcgtct 65 |||||||| ||||||||| ||||| |||||| ||||||| |||| ||||| ||||||| Sbjct: 3134052 cgttcgacgtcggcgccggccacgtcgacccgctgcgcgcgctggacccgggcctcgtct 3133993 Query: 66 acgac 70 ||||| Sbjct: 3133992 acgac 3133988 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 1 gacgccgttcgactacggcgccgggcac 28 |||||||||||||||||||||||||||| Sbjct: 7529694 gacgccgttcgactacggcgccgggcac 7529667 Score = 44.1 bits (22), Expect = 0.50 Identities = 46/54 (85%) Strand = Plus / Plus Query: 17 ggcgccgggcacgtggacccgacgcgcgcggtggagccggggctcgtctacgac 70 ||||||||||||||| ||||| || | || || || ||||| |||||||||||| Sbjct: 2371351 ggcgccgggcacgtgaacccggcgagggccgtcgacccgggcctcgtctacgac 2371404
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 218 bits (110), Expect = 2e-53 Identities = 225/262 (85%), Gaps = 6/262 (2%) Strand = Plus / Plus Query: 263 acggtgacgcacacgcgcacgctcaccaacgtgggcgcggcgggcacgtacaaggtggac 322 ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| | Sbjct: 22505986 acggtgacgcacaggcgcacgctcaccaacgtcggcgcggcggggacgtacaaggtgagc 22506045 Query: 323 gcctcggtgtccatgtccggggtgaccgtcgacgtgaagccgacggagctggagttcacg 382 || | | ||||| | || ||| |||| | |||| ||||||| ||||||| ||||||| Sbjct: 22506046 gcggccg---ccatgcctggcgtggccgtggccgtggagccgaccgagctggcgttcacg 22506102 Query: 383 gcgatcggcgagaagaagagctacacggtgagcttcacggcggccaagtcgcagccgtcg 442 || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 22506103 tcggccggcgagaagaagagctacacggtgagcttcacggcg---aagtcgcagccgtcg 22506159 Query: 443 ggcaccgccgggttcggccggctggtgtggtcggacggtaagcacaccgtggcgagtccg 502 ||||||||||| |||||||| || || ||||||||||| ||||||| ||||||||| ||| Sbjct: 22506160 ggcaccgccggattcggccgcctcgtctggtcggacggcaagcacagcgtggcgagcccg 22506219 Query: 503 atagcgttaacttggacatgat 524 || || || || |||||||||| Sbjct: 22506220 atggcatttacgtggacatgat 22506241 Score = 198 bits (100), Expect = 1e-47 Identities = 199/232 (85%) Strand = Plus / Plus Query: 2 acgccgttcgactacggcgccgggcacgtggacccgacgcgcgcggtggagccggggctc 61 ||||||||||||||||||||||| ||||| |||||| | |||| || || ||||| ||| Sbjct: 22505716 acgccgttcgactacggcgccggccacgtcgacccggccagcgccgtcgacccgggactc 22505775 Query: 62 gtctacgacctcggcaccggcgactacgtggacttcctgtgcgcgctcaagtacacgcct 121 ||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||| | Sbjct: 22505776 gtctacgacctcggcaccgccgactacgtcgacttcctctgcgcgctcaactacacgtcc 22505835 Query: 122 aacatgatcgccgcgctggcgcggagcaaggcctacgggtgcgccgcgaacaagacctac 181 | |||||||||||| |||||||||||||| |||||| ||| | | | |||| ||||| Sbjct: 22505836 accatgatcgccgccgtggcgcggagcaagagctacggctgcacggagggcaaggcctac 22505895 Query: 182 tccgtctccaacctcaactacccgtccttttccgtggcatactccacggcga 233 ||||| | ||||||||||||||||||||| ||||||| ||||| ||||||| Sbjct: 22505896 tccgtgtacaacctcaactacccgtccttcgccgtggcgtactcgacggcga 22505947 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 388 cggcgagaagaagagctacacggtgagcttcacggcggcc 427 |||||||||| |||||||||||||||||||| |||||||| Sbjct: 31275031 cggcgagaagcagagctacacggtgagcttcgcggcggcc 31274992 Score = 60.0 bits (30), Expect = 8e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 44 gcggtggagccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgc 103 |||||||| ||||| |||||||||||| ||| | ||| ||||||||| |||||||| ||| Sbjct: 31275357 gcggtggatccgggcctcgtctacgacatcgccgccgccgactacgtcgacttcctctgc 31275298 Query: 104 gc 105 || Sbjct: 31275297 gc 31275296 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 6 cgttcgactacggcgccgggcacgtggacccgacgcgcgcggtggagccggggctcgtct 65 |||||||| ||||||||| ||||| |||||| ||||||| |||| ||||| ||||||| Sbjct: 3134163 cgttcgacgtcggcgccggccacgtcgacccgctgcgcgcgctggacccgggcctcgtct 3134104 Query: 66 acgac 70 ||||| Sbjct: 3134103 acgac 3134099 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 1 gacgccgttcgactacggcgccgggcac 28 |||||||||||||||||||||||||||| Sbjct: 7527529 gacgccgttcgactacggcgccgggcac 7527502 Score = 44.1 bits (22), Expect = 0.50 Identities = 46/54 (85%) Strand = Plus / Plus Query: 17 ggcgccgggcacgtggacccgacgcgcgcggtggagccggggctcgtctacgac 70 ||||||||||||||| ||||| || | || || || ||||| |||||||||||| Sbjct: 2371461 ggcgccgggcacgtgaacccggcgagggccgtcgacccgggcctcgtctacgac 2371514
>dbj|AK105749.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B09, full insert sequence Length = 2517 Score = 218 bits (110), Expect = 2e-53 Identities = 225/262 (85%), Gaps = 6/262 (2%) Strand = Plus / Plus Query: 263 acggtgacgcacacgcgcacgctcaccaacgtgggcgcggcgggcacgtacaaggtggac 322 ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| | Sbjct: 2090 acggtgacgcacaggcgcacgctcaccaacgtcggcgcggcggggacgtacaaggtgagc 2149 Query: 323 gcctcggtgtccatgtccggggtgaccgtcgacgtgaagccgacggagctggagttcacg 382 || | | ||||| | || ||| |||| | |||| ||||||| ||||||| ||||||| Sbjct: 2150 gcggccg---ccatgcctggcgtggccgtggccgtggagccgaccgagctggcgttcacg 2206 Query: 383 gcgatcggcgagaagaagagctacacggtgagcttcacggcggccaagtcgcagccgtcg 442 || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 2207 tcggccggcgagaagaagagctacacggtgagcttcacggcg---aagtcgcagccgtcg 2263 Query: 443 ggcaccgccgggttcggccggctggtgtggtcggacggtaagcacaccgtggcgagtccg 502 ||||||||||| |||||||| || || ||||||||||| ||||||| ||||||||| ||| Sbjct: 2264 ggcaccgccggattcggccgcctcgtctggtcggacggcaagcacagcgtggcgagcccg 2323 Query: 503 atagcgttaacttggacatgat 524 || || || || |||||||||| Sbjct: 2324 atggcatttacgtggacatgat 2345 Score = 198 bits (100), Expect = 1e-47 Identities = 199/232 (85%) Strand = Plus / Plus Query: 2 acgccgttcgactacggcgccgggcacgtggacccgacgcgcgcggtggagccggggctc 61 ||||||||||||||||||||||| ||||| |||||| | |||| || || ||||| ||| Sbjct: 1820 acgccgttcgactacggcgccggccacgtcgacccggccagcgccgtcgacccgggactc 1879 Query: 62 gtctacgacctcggcaccggcgactacgtggacttcctgtgcgcgctcaagtacacgcct 121 ||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||| | Sbjct: 1880 gtctacgacctcggcaccgccgactacgtcgacttcctctgcgcgctcaactacacgtcc 1939 Query: 122 aacatgatcgccgcgctggcgcggagcaaggcctacgggtgcgccgcgaacaagacctac 181 | |||||||||||| |||||||||||||| |||||| ||| | | | |||| ||||| Sbjct: 1940 accatgatcgccgccgtggcgcggagcaagagctacggctgcacggagggcaaggcctac 1999 Query: 182 tccgtctccaacctcaactacccgtccttttccgtggcatactccacggcga 233 ||||| | ||||||||||||||||||||| ||||||| ||||| ||||||| Sbjct: 2000 tccgtgtacaacctcaactacccgtccttcgccgtggcgtactcgacggcga 2051
>gb|BT018407.1| Zea mays clone EL01N0326A09.d mRNA sequence Length = 1456 Score = 69.9 bits (35), Expect = 9e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 17 ggcgccgggcacgtggacccgacgcgcgcggtggagccggggctcgtctacgacctcggc 76 |||||||||||||||||||||| |||||| |||| |||||||| || |||||| ||||| Sbjct: 608 ggcgccgggcacgtggacccgatgcgcgccatggacccggggctggtgtacgacatcggc 667 Query: 77 accggcgactacgtg 91 | ||||||||||| Sbjct: 668 ccaagcgactacgtg 682
>gb|AY106470.1| Zea mays PCO136952 mRNA sequence Length = 741 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 388 cggcgagaagaagagctacacggtgagcttcacggcgg 425 |||||||||| ||||||||||||||||||||||||||| Sbjct: 341 cggcgagaagcagagctacacggtgagcttcacggcgg 378 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 194 ctcaactacccgtccttttccgtggc 219 ||||||||||||||||| |||||||| Sbjct: 165 ctcaactacccgtccttctccgtggc 190
>ref|XM_469861.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2568 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 388 cggcgagaagaagagctacacggtgagcttcacggcggcc 427 |||||||||| |||||||||||||||||||| |||||||| Sbjct: 2163 cggcgagaagcagagctacacggtgagcttcgcggcggcc 2202 Score = 60.0 bits (30), Expect = 8e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 44 gcggtggagccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgc 103 |||||||| ||||| |||||||||||| ||| | ||| ||||||||| |||||||| ||| Sbjct: 1837 gcggtggatccgggcctcgtctacgacatcgccgccgccgactacgtcgacttcctctgc 1896 Query: 104 gc 105 || Sbjct: 1897 gc 1898
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete sequence Length = 128017 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 388 cggcgagaagaagagctacacggtgagcttcacggcggcc 427 |||||||||| |||||||||||||||||||| |||||||| Sbjct: 105149 cggcgagaagcagagctacacggtgagcttcgcggcggcc 105110 Score = 60.0 bits (30), Expect = 8e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 44 gcggtggagccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgc 103 |||||||| ||||| |||||||||||| ||| | ||| ||||||||| |||||||| ||| Sbjct: 105475 gcggtggatccgggcctcgtctacgacatcgccgccgccgactacgtcgacttcctctgc 105416 Query: 104 gc 105 || Sbjct: 105415 gc 105414
>dbj|AK103255.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123P12, full insert sequence Length = 2813 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 388 cggcgagaagaagagctacacggtgagcttcacggcggcc 427 |||||||||| |||||||||||||||||||| |||||||| Sbjct: 2411 cggcgagaagcagagctacacggtgagcttcgcggcggcc 2450 Score = 60.0 bits (30), Expect = 8e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 44 gcggtggagccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgc 103 |||||||| ||||| |||||||||||| ||| | ||| ||||||||| |||||||| ||| Sbjct: 2085 gcggtggatccgggcctcgtctacgacatcgccgccgccgactacgtcgacttcctctgc 2144 Query: 104 gc 105 || Sbjct: 2145 gc 2146
>dbj|AK101646.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055P14, full insert sequence Length = 2667 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 388 cggcgagaagaagagctacacggtgagcttcacggcggcc 427 |||||||||| |||||||||||||||||||| |||||||| Sbjct: 2216 cggcgagaagcagagctacacggtgagcttcgcggcggcc 2255 Score = 60.0 bits (30), Expect = 8e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 44 gcggtggagccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgc 103 |||||||| ||||| |||||||||||| ||| | ||| ||||||||| |||||||| ||| Sbjct: 1890 gcggtggatccgggcctcgtctacgacatcgccgccgccgactacgtcgacttcctctgc 1949 Query: 104 gc 105 || Sbjct: 1950 gc 1951
>gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0067H15, complete sequence Length = 184316 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Minus Query: 101 tgcgcgctcaagtacacgcctaacatgatcgccgcgctggcgcggagcaaggcctacggg 160 ||||||||||| ||||| | | |||||||||||| ||||| |||||||| |||||| Sbjct: 84302 tgcgcgctcaactacacatccaccatgatcgccgccgtggcgaggagcaagagctacggc 84243 Query: 161 tgcgccgcgaacaagacctactccgtctccaacctcaactacccgtccttttccgtggc 219 ||| | | || |||| |||| ||| | | ||||||||||||||||||||| ||||||| Sbjct: 84242 tgctcggagagcaaggcctagtccatgtacaacctcaactacccgtccttcgccgtggc 84184
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Minus Query: 101 tgcgcgctcaagtacacgcctaacatgatcgccgcgctggcgcggagcaaggcctacggg 160 ||||||||||| ||||| | | |||||||||||| ||||| |||||||| |||||| Sbjct: 6959379 tgcgcgctcaactacacatccaccatgatcgccgccgtggcgaggagcaagagctacggc 6959320 Query: 161 tgcgccgcgaacaagacctactccgtctccaacctcaactacccgtccttttccgtggc 219 ||| | | || |||| |||| ||| | | ||||||||||||||||||||| ||||||| Sbjct: 6959319 tgctcggagagcaaggcctagtccatgtacaacctcaactacccgtccttcgccgtggc 6959261 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 53 ccggggctcgtctacgacctcggcaccggcgactacg 89 ||||| || ||||||||||||| | |||||||||||| Sbjct: 17578275 ccgggcctggtctacgacctcgccgccggcgactacg 17578311
>ref|XM_470262.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1992 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 6 cgttcgactacggcgccgggcacgtggacccgacgcgcgcggtggagccggggctcgtct 65 |||||||| ||||||||| ||||| |||||| ||||||| |||| ||||| ||||||| Sbjct: 1397 cgttcgacgtcggcgccggccacgtcgacccgctgcgcgcgctggacccgggcctcgtct 1456 Query: 66 acgac 70 ||||| Sbjct: 1457 acgac 1461
>gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1134F05, complete sequence Length = 101799 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 6 cgttcgactacggcgccgggcacgtggacccgacgcgcgcggtggagccggggctcgtct 65 |||||||| ||||||||| ||||| |||||| ||||||| |||| ||||| ||||||| Sbjct: 57065 cgttcgacgtcggcgccggccacgtcgacccgctgcgcgcgctggacccgggcctcgtct 57006 Query: 66 acgac 70 ||||| Sbjct: 57005 acgac 57001
>dbj|AK108516.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-A10, full insert sequence Length = 1078 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 6 cgttcgactacggcgccgggcacgtggacccgacgcgcgcggtggagccggggctcgtct 65 |||||||| ||||||||| ||||| |||||| ||||||| |||| ||||| ||||||| Sbjct: 604 cgttcgacgtcggcgccggccacgtcgacccgctgcgcgcgctggacccgggcctcgtct 545 Query: 66 acgac 70 ||||| Sbjct: 544 acgac 540
>dbj|AK071242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084K04, full insert sequence Length = 1153 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 6 cgttcgactacggcgccgggcacgtggacccgacgcgcgcggtggagccggggctcgtct 65 |||||||| ||||||||| ||||| |||||| ||||||| |||| ||||| ||||||| Sbjct: 291 cgttcgacgtcggcgccggccacgtcgacccgctgcgcgcgctggacccgggcctcgtct 350 Query: 66 acgac 70 ||||| Sbjct: 351 acgac 355
>ref|XM_482713.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1018 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 7 gttcgactacggcgccgggcacgtggacccgacgcgcgcggtggagccggggctcgtcta 66 |||||||| |||||| |||||||| ||||||| |||||| |||| || || |||||||| Sbjct: 815 gttcgacttcggcgcagggcacgttgacccgatgcgcgccatggaccctggtctcgtcta 756 Query: 67 cgac 70 |||| Sbjct: 755 cgac 752
>ref|XM_482712.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2391 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 7 gttcgactacggcgccgggcacgtggacccgacgcgcgcggtggagccggggctcgtcta 66 |||||||| |||||| |||||||| ||||||| |||||| |||| || || |||||||| Sbjct: 1860 gttcgacttcggcgcagggcacgttgacccgatgcgcgccatggaccctggtctcgtcta 1919 Query: 67 cgac 70 |||| Sbjct: 1920 cgac 1923
>ref|XM_476161.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 978 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Minus Query: 124 catgatcgccgcgctggcgcggagcaaggcctacgggtgcgccgcgaacaagacctactc 183 |||||||||||| ||||| |||||||| |||||| ||| | | || |||| |||| || Sbjct: 700 catgatcgccgccgtggcgaggagcaagagctacggctgctcggagagcaaggcctagtc 641 Query: 184 cgtctccaacctcaactacccgtccttttccgtggc 219 | | | ||||||||||||||||||||| ||||||| Sbjct: 640 catgtacaacctcaactacccgtccttcgccgtggc 605
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 7 gttcgactacggcgccgggcacgtggacccgacgcgcgcggtggagccggggctcgtcta 66 |||||||| |||||| |||||||| ||||||| |||||| |||| || || |||||||| Sbjct: 22105762 gttcgacttcggcgcagggcacgttgacccgatgcgcgccatggaccctggtctcgtcta 22105821 Query: 67 cgac 70 |||| Sbjct: 22105822 cgac 22105825
>gb|AC134239.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0042A11, complete sequence Length = 113049 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 1 gacgccgttcgactacggcgccgggcac 28 |||||||||||||||||||||||||||| Sbjct: 58590 gacgccgttcgactacggcgccgggcac 58563
>dbj|AP003871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1117_F10 Length = 169948 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 7 gttcgactacggcgccgggcacgtggacccgacgcgcgcggtggagccggggctcgtcta 66 |||||||| |||||| |||||||| ||||||| |||||| |||| || || |||||||| Sbjct: 68725 gttcgacttcggcgcagggcacgttgacccgatgcgcgccatggaccctggtctcgtcta 68784 Query: 67 cgac 70 |||| Sbjct: 68785 cgac 68788
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 53 ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgcgctc 109 |||||||||||||||||| |||| || ||||||| | ||| |||||||||||||| Sbjct: 33001628 ccggggctcgtctacgacgccggcgtcgacgactacctcgacgtcctgtgcgcgctc 33001684 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 53 ccggggctcgtctacgacctcggcaccggcgactac 88 ||||| |||||||||||||||| | ||| ||||||| Sbjct: 5530642 ccgggcctcgtctacgacctcgccgccgtcgactac 5530607 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 cgcgctggcgcggagcaagg 152 |||||||||||||||||||| Sbjct: 4653347 cgcgctggcgcggagcaagg 4653366
>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1293_A01 Length = 139121 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 53 ccggggctcgtctacgacctcggcaccggcgactacgtggacttcctgtgcgcgctc 109 |||||||||||||||||| |||| || ||||||| | ||| |||||||||||||| Sbjct: 47568 ccggggctcgtctacgacgccggcgtcgacgactacctcgacgtcctgtgcgcgctc 47624
>gb|AY108210.1| Zea mays PCO096605 mRNA sequence Length = 1795 Score = 48.1 bits (24), Expect = 0.032 Identities = 57/68 (83%) Strand = Plus / Plus Query: 17 ggcgccgggcacgtggacccgacgcgcgcggtggagccggggctcgtctacgacctcggc 76 |||||||| ||||| ||||| | ||||| || || |||||||| || |||||||||||| Sbjct: 963 ggcgccggctacgtgaacccgtcccgcgccgtcgacccggggctggtgtacgacctcggc 1022 Query: 77 accggcga 84 ||||||| Sbjct: 1023 gccggcga 1030
>ref|XM_474683.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2277 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 48 tggagccggggctcgtctacgacctc 73 |||| ||||||||||||||||||||| Sbjct: 1811 tggacccggggctcgtctacgacctc 1836
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 48 tggagccggggctcgtctacgacctc 73 |||| ||||||||||||||||||||| Sbjct: 5562098 tggacccggggctcgtctacgacctc 5562073
>gb|AC122149.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0083D24, complete sequence Length = 150503 Score = 44.1 bits (22), Expect = 0.50 Identities = 46/54 (85%) Strand = Plus / Plus Query: 17 ggcgccgggcacgtggacccgacgcgcgcggtggagccggggctcgtctacgac 70 ||||||||||||||| ||||| || | || || || ||||| |||||||||||| Sbjct: 88193 ggcgccgggcacgtgaacccggcgagggccgtcgacccgggcctcgtctacgac 88246
>emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006L01, complete sequence Length = 162227 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 48 tggagccggggctcgtctacgacctc 73 |||| ||||||||||||||||||||| Sbjct: 19305 tggacccggggctcgtctacgacctc 19280
>emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027O01, complete sequence Length = 150283 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 48 tggagccggggctcgtctacgacctc 73 |||| ||||||||||||||||||||| Sbjct: 116728 tggacccggggctcgtctacgacctc 116703
>ref|XM_475134.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2355 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 53 ccggggctcgtctacgacctcggcaccggcgactacg 89 ||||| || ||||||||||||| | |||||||||||| Sbjct: 1849 ccgggcctggtctacgacctcgccgccggcgactacg 1885
>gb|AY596296.1| Haloarcula marismortui ATCC 43049 plasmid pNG700, complete sequence Length = 410554 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 gacgccgttcgactacggcgc 21 ||||||||||||||||||||| Sbjct: 254576 gacgccgttcgactacggcgc 254556
>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07, complete sequence Length = 159932 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 53 ccggggctcgtctacgacctcggcaccggcgactacg 89 ||||| || ||||||||||||| | |||||||||||| Sbjct: 108080 ccgggcctggtctacgacctcgccgccggcgactacg 108116
>dbj|AK064686.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D11, full insert sequence Length = 1125 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 53 ccggggctcgtctacgacctcggcaccggcgactacg 89 ||||| || ||||||||||||| | |||||||||||| Sbjct: 518 ccgggcctggtctacgacctcgccgccggcgactacg 554
>emb|Z75743.1|HSLUCA9 Human DNA sequence from clone XXcos-9 on chromosome 3, complete sequence Length = 24055 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 448 cgccgggttcggccggctggtgtgg 472 |||||||| |||||||||||||||| Sbjct: 3313 cgccgggtgcggccggctggtgtgg 3289
>gb|AY790329.1| Pseudomonas sp. KBOS 17 PHA synthase I (phaC1), PHA depolymerase (phaZ), and PHA synthase II (phaC2) genes, complete cds Length = 4621 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 cggcgatcggcgagaagaag 400 |||||||||||||||||||| Sbjct: 1045 cggcgatcggcgagaagaag 1064
>ref|XM_464493.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2610 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 53 ccggggctcgtctacgacctcggcaccggcgactac 88 ||||| |||||||||||||||| | ||| ||||||| Sbjct: 1986 ccgggcctcgtctacgacctcgccgccgtcgactac 2021
>ref|XM_464494.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1408 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 53 ccggggctcgtctacgacctcggcaccggcgactac 88 ||||| |||||||||||||||| | ||| ||||||| Sbjct: 782 ccgggcctcgtctacgacctcgccgccgtcgactac 817
>ref|XM_464352.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1698 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 cgcgctggcgcggagcaagg 152 |||||||||||||||||||| Sbjct: 1065 cgcgctggcgcggagcaagg 1084
>ref|NM_196673.1| Oryza sativa (japonica cultivar-group) putative soluble starch synthase II-1 (OSJNBb0016G17.2), mRNA Length = 3219 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 gtcgcagccgtcgggcaccg 449 |||||||||||||||||||| Sbjct: 2970 gtcgcagccgtcgggcaccg 2951
>ref|XM_479590.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2337 Score = 40.1 bits (20), Expect = 7.8 Identities = 50/60 (83%) Strand = Plus / Plus Query: 16 cggcgccgggcacgtggacccgacgcgcgcggtggagccggggctcgtctacgacctcgg 75 ||||||||| |||||| |||||||| | || | || ||||| |||||||||||| |||| Sbjct: 1782 cggcgccggccacgtgaacccgacgagagccgccgacccgggcctcgtctacgacatcgg 1841
>ref|XM_478847.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2445 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 gtggagccggggctcgtctacgac 70 ||||| |||||||||||||||||| Sbjct: 1885 gtggacccggggctcgtctacgac 1908
>ref|XM_953219.1| Neurospora crassa OR74A hypothetical protein (NCU09913.1) partial mRNA Length = 1443 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 cgacctcggcaccggcgact 86 |||||||||||||||||||| Sbjct: 762 cgacctcggcaccggcgact 781
>ref|XM_329660.1| Neurospora crassa OR74A hypothetical protein (NCU09913.1) partial mRNA Length = 1443 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 cgacctcggcaccggcgact 86 |||||||||||||||||||| Sbjct: 762 cgacctcggcaccggcgact 781
>gb|AE005803.1| Caulobacter crescentus CB15 section 129 of 359 of the complete genome Length = 10483 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 324 cctcggtgtccatgtccggggtga 347 ||||||||| |||||||||||||| Sbjct: 1123 cctcggtgttcatgtccggggtga 1100
>gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0016G17, complete sequence Length = 141041 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 gtcgcagccgtcgggcaccg 449 |||||||||||||||||||| Sbjct: 22624 gtcgcagccgtcgggcaccg 22605
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 gtcgcagccgtcgggcaccg 449 |||||||||||||||||||| Sbjct: 15168925 gtcgcagccgtcgggcaccg 15168906
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.8 Identities = 50/60 (83%) Strand = Plus / Plus Query: 16 cggcgccgggcacgtggacccgacgcgcgcggtggagccggggctcgtctacgacctcgg 75 ||||||||| |||||| |||||||| | || | || ||||| |||||||||||| |||| Sbjct: 29078514 cggcgccggccacgtgaacccgacgagagccgccgacccgggcctcgtctacgacatcgg 29078573 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 gtggagccggggctcgtctacgac 70 ||||| |||||||||||||||||| Sbjct: 23346514 gtggacccggggctcgtctacgac 23346537
>gb|AC087547.2|AC087547 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0040I11, complete sequence Length = 129420 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 gtcgcagccgtcgggcaccg 449 |||||||||||||||||||| Sbjct: 77538 gtcgcagccgtcgggcaccg 77519
>dbj|AB220636.1| Uncultured bacterium phaC gene for PHA synthase, partial cds, clone:N-33 Length = 479 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 cggcgatcggcgagaagaag 400 |||||||||||||||||||| Sbjct: 257 cggcgatcggcgagaagaag 276
>dbj|AB220618.1| Uncultured bacterium phaC gene for PHA synthase, partial cds, clone:N-14 Length = 479 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 cggcgatcggcgagaagaag 400 |||||||||||||||||||| Sbjct: 257 cggcgatcggcgagaagaag 276
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 cggcgccgggcacgtggacc 35 |||||||||||||||||||| Sbjct: 4020245 cggcgccgggcacgtggacc 4020226 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 14 tacggcgccgggcacgtggacccg 37 ||||||||| |||||||||||||| Sbjct: 2975908 tacggcgcccggcacgtggacccg 2975885
>dbj|AP004182.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1199_H01 Length = 107252 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 gtggagccggggctcgtctacgac 70 ||||| |||||||||||||||||| Sbjct: 27738 gtggacccggggctcgtctacgac 27761
>dbj|AP003804.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1065_B06 Length = 113170 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 gtggagccggggctcgtctacgac 70 ||||| |||||||||||||||||| Sbjct: 101772 gtggacccggggctcgtctacgac 101795
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 gccgttcgactacggcgccg 23 |||||||||||||||||||| Sbjct: 241634 gccgttcgactacggcgccg 241615
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 cggcgccgggcacgtggacc 35 |||||||||||||||||||| Sbjct: 613149 cggcgccgggcacgtggacc 613130
>dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0026H03 Length = 151827 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 53 ccggggctcgtctacgacctcggcaccggcgactac 88 ||||| |||||||||||||||| | ||| ||||||| Sbjct: 75377 ccgggcctcgtctacgacctcgccgccgtcgactac 75342
>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1150_E04 Length = 130973 Score = 40.1 bits (20), Expect = 7.8 Identities = 50/60 (83%) Strand = Plus / Plus Query: 16 cggcgccgggcacgtggacccgacgcgcgcggtggagccggggctcgtctacgacctcgg 75 ||||||||| |||||| |||||||| | || | || ||||| |||||||||||| |||| Sbjct: 13632 cggcgccggccacgtgaacccgacgagagccgccgacccgggcctcgtctacgacatcgg 13691
>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1200_C08 Length = 106214 Score = 40.1 bits (20), Expect = 7.8 Identities = 50/60 (83%) Strand = Plus / Plus Query: 16 cggcgccgggcacgtggacccgacgcgcgcggtggagccggggctcgtctacgacctcgg 75 ||||||||| |||||| |||||||| | || | || ||||| |||||||||||| |||| Sbjct: 26471 cggcgccggccacgtgaacccgacgagagccgccgacccgggcctcgtctacgacatcgg 26530
>dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1572_F02 Length = 93626 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 cgcgctggcgcggagcaagg 152 |||||||||||||||||||| Sbjct: 25419 cgcgctggcgcggagcaagg 25438
>dbj|AK120287.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050B17, full insert sequence Length = 2614 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 53 ccggggctcgtctacgacctcggcaccggcgactac 88 ||||| |||||||||||||||| | ||| ||||||| Sbjct: 1990 ccgggcctcgtctacgacctcgccgccgtcgactac 2025
>dbj|AK119348.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-E09, full insert sequence Length = 2601 Score = 40.1 bits (20), Expect = 7.8 Identities = 50/60 (83%) Strand = Plus / Plus Query: 16 cggcgccgggcacgtggacccgacgcgcgcggtggagccggggctcgtctacgacctcgg 75 ||||||||| |||||| |||||||| | || | || ||||| |||||||||||| |||| Sbjct: 1820 cggcgccggccacgtgaacccgacgagagccgccgacccgggcctcgtctacgacatcgg 1879
>dbj|AK107610.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-131-C05, full insert sequence Length = 2445 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 gtggagccggggctcgtctacgac 70 ||||| |||||||||||||||||| Sbjct: 1885 gtggacccggggctcgtctacgac 1908
>dbj|AK106394.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-F05, full insert sequence Length = 1408 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 53 ccggggctcgtctacgacctcggcaccggcgactac 88 ||||| |||||||||||||||| | ||| ||||||| Sbjct: 782 ccgggcctcgtctacgacctcgccgccgtcgactac 817
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ctccggcgccaccacggtga 269 |||||||||||||||||||| Sbjct: 1038314 ctccggcgccaccacggtga 1038295
>dbj|AK062774.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-A06, full insert sequence Length = 849 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 gtcgcagccgtcgggcaccg 449 |||||||||||||||||||| Sbjct: 348 gtcgcagccgtcgggcaccg 329
>gb|AY105444.1| Zea mays PCO128743 mRNA sequence Length = 1006 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 tacggcgccgggcacgtggacccg 37 ||||||||||| |||||||||||| Sbjct: 729 tacggcgccggccacgtggacccg 752
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 cgtcgggcaccgccgggttc 457 |||||||||||||||||||| Sbjct: 2520997 cgtcgggcaccgccgggttc 2520978
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 gtcgcagccgtcgggcaccg 449 |||||||||||||||||||| Sbjct: 15177166 gtcgcagccgtcgggcaccg 15177147 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,521,530 Number of Sequences: 3902068 Number of extensions: 2521530 Number of successful extensions: 54845 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 52853 Number of HSP's gapped (non-prelim): 1996 length of query: 573 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 550 effective length of database: 17,143,297,704 effective search space: 9428813737200 effective search space used: 9428813737200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
