ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal19e17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480098.1| Oryza sativa (japonica cultivar-group), mRNA 355 1e-94
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 196 6e-47
3dbj|AP005741.3| Oryza sativa (japonica cultivar-group) genomic D... 196 6e-47
4dbj|AP005740.3| Oryza sativa (japonica cultivar-group) genomic D... 196 6e-47
5gb|AC119408.23| Medicago truncatula clone mth2-5f18, complete se... 70 9e-09
6ref|NM_117841.3| Arabidopsis thaliana oxidoreductase AT4G17370 m... 54 5e-04
7gb|BT015852.1| Arabidopsis thaliana At4g17370 gene, complete cds 54 5e-04
8gb|BT015340.1| Arabidopsis thaliana At4g17370 gene, complete cds 54 5e-04
9emb|BX826750.1|CNS0A37M Arabidopsis thaliana Full-length cDNA Co... 54 5e-04
10ref|XM_592197.2| PREDICTED: Bos taurus similar to desmoplakin is... 46 0.13
11emb|Z97343.1|ATFCA8 Arabidopsis thaliana DNA chromosome 4, ESSA ... 44 0.50
12emb|Z67753.1|OSCHLPLXX Odontella sinensis complete chloroplast g... 44 0.50
13emb|AL161546.2|ATCHRIV46 Arabidopsis thaliana DNA chromosome 4, ... 44 0.50
14gb|AF433669.1| Rhizobium tropici strain CIAT899 hypothetical tra... 44 0.50
15ref|XM_466075.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.0
16dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
17gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 42 2.0
18dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
19gb|AF165939.1|AF165939 Citrus limon vacuolar V-H+ATPase subunit ... 42 2.0
20dbj|AK100984.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
21gb|AC112971.8| Mus musculus chromosome 1, clone RP24-444M12, com... 40 7.9
22gb|AC109162.12| Mus musculus chromosome 7, clone RP24-177G14, co... 40 7.9
23gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 7.9
24ref|XM_948455.1| Theileria annulata strain Ankara hypothetical p... 40 7.9
25ref|XM_948459.1| Theileria annulata strain Ankara hypothetical p... 40 7.9
26gb|AC119803.10| Mus musculus chromosome 6, clone RP23-124H21, co... 40 7.9
27emb|AL513484.6| Human DNA sequence from clone RP13-223P22 on chr... 40 7.9
28emb|AL392083.17| Human DNA sequence from clone RP11-29A19 on chr... 40 7.9
29gb|AC012366.10| Homo sapiens BAC clone RP11-466M21 from 2, compl... 40 7.9
30emb|CR759771.5| Zebrafish DNA sequence from clone DKEY-261N3 in ... 40 7.9
31gb|AY609600.1| Sus scrofa clone Clu_204757.scr.msk.p1.Contig1, m... 40 7.9
32gb|AC153853.4| Mus musculus BAC RP23-341J13 (Roswell Park Cance... 40 7.9
33dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 7.9
34gb|AC171210.1| Mus musculus BAC clone RP23-36D15 from chromosome... 40 7.9
35emb|AL773591.7| Pig DNA sequence from clone XX-35B1, complete se... 40 7.9 
>ref|XM_480098.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2538

 Score =  355 bits (179), Expect = 1e-94
 Identities = 266/295 (90%)
 Strand = Plus / Plus

                                                                       
Query: 283 tagaagctgccaaacagagaccggacatactcgtgcaagtcggattagaataccggtata 342
           ||||||| || ||||||||| | |||||||| |||||||| |||||||||||| ||||||
Sbjct: 527 tagaagcggctaaacagagatcagacatacttgtgcaagttggattagaatacaggtata 586

                                                                       
Query: 343 tgcctccggtagcgaagctgatagatactgttaaaagcggcacactagggcaggtcagaa 402
           |||||||||| || ||||| ||||||||||||||||| |||||  | ||||| |||||||
Sbjct: 587 tgcctccggttgctaagcttatagatactgttaaaagtggcaccttggggcaagtcagaa 646

                                                                       
Query: 403 tggtggctatccgtgaacaccggtttcctttccttgttaaggtgaacaactggaataggt 462
           ||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 647 tggtggcaatccgtgaacaccggtttcctttccttgttaaggttaacaattggaataggt 706

                                                                       
Query: 463 ttaattgcaacagtggggggactctggttgagaagtgctgccacttttttgatttgataa 522
           | |||||||||||||| || ||||| ||||||||||||||||| |||||||||||||| |
Sbjct: 707 tcaattgcaacagtggaggaactcttgttgagaagtgctgccatttttttgatttgatga 766

                                                                  
Query: 523 gattgtttgcagatgcgaaccctgttcgtgtaatggcctctggagctattgatgt 577
           |||||||||||| ||| |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 767 gattgtttgcagctgcaaaccctgttcgtgtgatggcttctggagccattgatgt 821



 Score =  117 bits (59), Expect = 4e-23
 Identities = 68/71 (95%)
 Strand = Plus / Plus

                                                                       
Query: 90  gtgaggtacgggatagttggggtcggcatgatggggagggagcacctccacaacctcgcc 149
           ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct: 40  gtgaggtacgggatagtcggggtggggatgatggggagggagcacctccacaacctcgcc 99

                      
Query: 150 cacctcgccgg 160
           |||||||||||
Sbjct: 100 cacctcgccgg 110



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                  
Query: 193 gcgtcacctgcctcgccgacccccatccggagtccctcc 231
           ||||||||||||||||||||||||| |||||||| ||||
Sbjct: 146 gcgtcacctgcctcgccgacccccacccggagtcgctcc 184
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  196 bits (99), Expect = 6e-47
 Identities = 147/163 (90%)
 Strand = Plus / Minus

                                                                           
Query: 283     tagaagctgccaaacagagaccggacatactcgtgcaagtcggattagaataccggtata 342
               ||||||| || ||||||||| | |||||||| |||||||| |||||||||||| ||||||
Sbjct: 2756689 tagaagcggctaaacagagatcagacatacttgtgcaagttggattagaatacaggtata 2756630

                                                                           
Query: 343     tgcctccggtagcgaagctgatagatactgttaaaagcggcacactagggcaggtcagaa 402
               |||||||||| || ||||| ||||||||||||||||| |||||  | ||||| |||||||
Sbjct: 2756629 tgcctccggttgctaagcttatagatactgttaaaagtggcaccttggggcaagtcagaa 2756570

                                                          
Query: 403     tggtggctatccgtgaacaccggtttcctttccttgttaaggt 445
               ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2756569 tggtggcaatccgtgaacaccggtttcctttccttgttaaggt 2756527



 Score =  167 bits (84), Expect = 5e-38
 Identities = 123/136 (90%)
 Strand = Plus / Minus

                                                                           
Query: 442     aggtgaacaactggaataggtttaattgcaacagtggggggactctggttgagaagtgct 501
               |||| ||||| ||||||||||| |||||||||||||| || ||||| |||||||||||||
Sbjct: 2756446 aggttaacaattggaataggttcaattgcaacagtggaggaactcttgttgagaagtgct 2756387

                                                                           
Query: 502     gccacttttttgatttgataagattgtttgcagatgcgaaccctgttcgtgtaatggcct 561
               |||| |||||||||||||| ||||||||||||| ||| |||||||||||||| ||||| |
Sbjct: 2756386 gccatttttttgatttgatgagattgtttgcagctgcaaaccctgttcgtgtgatggctt 2756327

                               
Query: 562     ctggagctattgatgt 577
               ||||||| ||||||||
Sbjct: 2756326 ctggagccattgatgt 2756311



 Score =  117 bits (59), Expect = 4e-23
 Identities = 68/71 (95%)
 Strand = Plus / Minus

                                                                           
Query: 90      gtgaggtacgggatagttggggtcggcatgatggggagggagcacctccacaacctcgcc 149
               ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct: 2758772 gtgaggtacgggatagtcggggtggggatgatggggagggagcacctccacaacctcgcc 2758713

                          
Query: 150     cacctcgccgg 160
               |||||||||||
Sbjct: 2758712 cacctcgccgg 2758702



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                      
Query: 193     gcgtcacctgcctcgccgacccccatccggagtccctcc 231
               ||||||||||||||||||||||||| |||||||| ||||
Sbjct: 2758666 gcgtcacctgcctcgccgacccccacccggagtcgctcc 2758628
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>dbj|AP005741.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0470H09
          Length = 141257

 Score =  196 bits (99), Expect = 6e-47
 Identities = 147/163 (90%)
 Strand = Plus / Minus

                                                                          
Query: 283    tagaagctgccaaacagagaccggacatactcgtgcaagtcggattagaataccggtata 342
              ||||||| || ||||||||| | |||||||| |||||||| |||||||||||| ||||||
Sbjct: 134970 tagaagcggctaaacagagatcagacatacttgtgcaagttggattagaatacaggtata 134911

                                                                          
Query: 343    tgcctccggtagcgaagctgatagatactgttaaaagcggcacactagggcaggtcagaa 402
              |||||||||| || ||||| ||||||||||||||||| |||||  | ||||| |||||||
Sbjct: 134910 tgcctccggttgctaagcttatagatactgttaaaagtggcaccttggggcaagtcagaa 134851

                                                         
Query: 403    tggtggctatccgtgaacaccggtttcctttccttgttaaggt 445
              ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 134850 tggtggcaatccgtgaacaccggtttcctttccttgttaaggt 134808



 Score =  167 bits (84), Expect = 5e-38
 Identities = 123/136 (90%)
 Strand = Plus / Minus

                                                                          
Query: 442    aggtgaacaactggaataggtttaattgcaacagtggggggactctggttgagaagtgct 501
              |||| ||||| ||||||||||| |||||||||||||| || ||||| |||||||||||||
Sbjct: 134727 aggttaacaattggaataggttcaattgcaacagtggaggaactcttgttgagaagtgct 134668

                                                                          
Query: 502    gccacttttttgatttgataagattgtttgcagatgcgaaccctgttcgtgtaatggcct 561
              |||| |||||||||||||| ||||||||||||| ||| |||||||||||||| ||||| |
Sbjct: 134667 gccatttttttgatttgatgagattgtttgcagctgcaaaccctgttcgtgtgatggctt 134608

                              
Query: 562    ctggagctattgatgt 577
              ||||||| ||||||||
Sbjct: 134607 ctggagccattgatgt 134592



 Score =  117 bits (59), Expect = 4e-23
 Identities = 68/71 (95%)
 Strand = Plus / Minus

                                                                          
Query: 90     gtgaggtacgggatagttggggtcggcatgatggggagggagcacctccacaacctcgcc 149
              ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct: 137053 gtgaggtacgggatagtcggggtggggatgatggggagggagcacctccacaacctcgcc 136994

                         
Query: 150    cacctcgccgg 160
              |||||||||||
Sbjct: 136993 cacctcgccgg 136983



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                     
Query: 193    gcgtcacctgcctcgccgacccccatccggagtccctcc 231
              ||||||||||||||||||||||||| |||||||| ||||
Sbjct: 136947 gcgtcacctgcctcgccgacccccacccggagtcgctcc 136909
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>dbj|AP005740.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0015A04
          Length = 152058

 Score =  196 bits (99), Expect = 6e-47
 Identities = 147/163 (90%)
 Strand = Plus / Minus

                                                                         
Query: 283   tagaagctgccaaacagagaccggacatactcgtgcaagtcggattagaataccggtata 342
             ||||||| || ||||||||| | |||||||| |||||||| |||||||||||| ||||||
Sbjct: 19838 tagaagcggctaaacagagatcagacatacttgtgcaagttggattagaatacaggtata 19779

                                                                         
Query: 343   tgcctccggtagcgaagctgatagatactgttaaaagcggcacactagggcaggtcagaa 402
             |||||||||| || ||||| ||||||||||||||||| |||||  | ||||| |||||||
Sbjct: 19778 tgcctccggttgctaagcttatagatactgttaaaagtggcaccttggggcaagtcagaa 19719

                                                        
Query: 403   tggtggctatccgtgaacaccggtttcctttccttgttaaggt 445
             ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 19718 tggtggcaatccgtgaacaccggtttcctttccttgttaaggt 19676



 Score =  167 bits (84), Expect = 5e-38
 Identities = 123/136 (90%)
 Strand = Plus / Minus

                                                                         
Query: 442   aggtgaacaactggaataggtttaattgcaacagtggggggactctggttgagaagtgct 501
             |||| ||||| ||||||||||| |||||||||||||| || ||||| |||||||||||||
Sbjct: 19595 aggttaacaattggaataggttcaattgcaacagtggaggaactcttgttgagaagtgct 19536

                                                                         
Query: 502   gccacttttttgatttgataagattgtttgcagatgcgaaccctgttcgtgtaatggcct 561
             |||| |||||||||||||| ||||||||||||| ||| |||||||||||||| ||||| |
Sbjct: 19535 gccatttttttgatttgatgagattgtttgcagctgcaaaccctgttcgtgtgatggctt 19476

                             
Query: 562   ctggagctattgatgt 577
             ||||||| ||||||||
Sbjct: 19475 ctggagccattgatgt 19460



 Score =  117 bits (59), Expect = 4e-23
 Identities = 68/71 (95%)
 Strand = Plus / Minus

                                                                         
Query: 90    gtgaggtacgggatagttggggtcggcatgatggggagggagcacctccacaacctcgcc 149
             ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct: 21921 gtgaggtacgggatagtcggggtggggatgatggggagggagcacctccacaacctcgcc 21862

                        
Query: 150   cacctcgccgg 160
             |||||||||||
Sbjct: 21861 cacctcgccgg 21851



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 193   gcgtcacctgcctcgccgacccccatccggagtccctcc 231
             ||||||||||||||||||||||||| |||||||| ||||
Sbjct: 21815 gcgtcacctgcctcgccgacccccacccggagtcgctcc 21777
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>gb|AC119408.23| Medicago truncatula clone mth2-5f18, complete sequence
          Length = 120127

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 86/103 (83%)
 Strand = Plus / Minus

                                                                         
Query: 477   ggggggactctggttgagaagtgctgccacttttttgatttgataagattgtttgcagat 536
             ||||| |||||||| |||||||| || |||||||||||| | || ||  | ||||  | |
Sbjct: 63043 gggggaactctggtagagaagtgttgtcacttttttgatctcatgaggctctttgttggt 62984

                                                        
Query: 537   gcgaaccctgttcgtgtaatggcctctggagctattgatgtta 579
             || || ||||||||||| ||||| |||||||||||||||||||
Sbjct: 62983 gcaaatcctgttcgtgtgatggcttctggagctattgatgtta 62941
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>ref|NM_117841.3| Arabidopsis thaliana oxidoreductase AT4G17370 mRNA, complete cds
          Length = 1356

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 72/87 (82%)
 Strand = Plus / Plus

                                                                       
Query: 429 cctttccttgttaaggtgaacaactggaataggtttaattgcaacagtggggggactctg 488
           |||||| | ||||||||||||||||||||||| || |||   |||| ||| |||||  | 
Sbjct: 644 cctttcttggttaaggtgaacaactggaatagattcaatgtgaacactggagggacctta 703

                                      
Query: 489 gttgagaagtgctgccacttttttgat 515
           || ||||| ||||||||||| ||||||
Sbjct: 704 gtggagaaatgctgccacttctttgat 730
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>gb|BT015852.1| Arabidopsis thaliana At4g17370 gene, complete cds
          Length = 1107

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 72/87 (82%)
 Strand = Plus / Plus

                                                                       
Query: 429 cctttccttgttaaggtgaacaactggaataggtttaattgcaacagtggggggactctg 488
           |||||| | ||||||||||||||||||||||| || |||   |||| ||| |||||  | 
Sbjct: 514 cctttcttggttaaggtgaacaactggaatagattcaatgtgaacactggagggacctta 573

                                      
Query: 489 gttgagaagtgctgccacttttttgat 515
           || ||||| ||||||||||| ||||||
Sbjct: 574 gtggagaaatgctgccacttctttgat 600
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>gb|BT015340.1| Arabidopsis thaliana At4g17370 gene, complete cds
          Length = 1344

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 72/87 (82%)
 Strand = Plus / Plus

                                                                       
Query: 429 cctttccttgttaaggtgaacaactggaataggtttaattgcaacagtggggggactctg 488
           |||||| | ||||||||||||||||||||||| || |||   |||| ||| |||||  | 
Sbjct: 641 cctttcttggttaaggtgaacaactggaatagattcaatgtgaacactggagggacctta 700

                                      
Query: 489 gttgagaagtgctgccacttttttgat 515
           || ||||| ||||||||||| ||||||
Sbjct: 701 gtggagaaatgctgccacttctttgat 727
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>emb|BX826750.1|CNS0A37M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB60ZA04 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1355

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 72/87 (82%)
 Strand = Plus / Plus

                                                                       
Query: 429 cctttccttgttaaggtgaacaactggaataggtttaattgcaacagtggggggactctg 488
           |||||| | ||||||||||||||||||||||| || |||   |||| ||| |||||  | 
Sbjct: 644 cctttcttggttaaggtgaacaactggaatagattcaatgtgaacactggagggacctta 703

                                      
Query: 489 gttgagaagtgctgccacttttttgat 515
           || ||||| ||||||||||| ||||||
Sbjct: 704 gtggagaaatgctgccacttctttgat 730
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>ref|XM_592197.2| PREDICTED: Bos taurus similar to desmoplakin isoform II, transcript
            variant 1 (LOC514360), mRNA
          Length = 9380

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 180  tccgtccgcgtctgcgtcacctgcctc 206
            ||||||||| |||||||||||||||||
Sbjct: 4409 tccgtccgcatctgcgtcacctgcctc 4383
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>emb|Z97343.1|ATFCA8 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8
          Length = 207674

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                         
Query: 442   aggtgaacaactggaataggtttaattgcaacagtggggggactctggttgagaagtgct 501
             ||||||||||||||||||| || |||   |||| ||| |||||  | || ||||| ||||
Sbjct: 71829 aggtgaacaactggaatagattcaatgtgaacactggagggaccttagtggagaaatgct 71888

                           
Query: 502   gccacttttttgat 515
             ||||||| ||||||
Sbjct: 71889 gccacttctttgat 71902
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>emb|Z67753.1|OSCHLPLXX Odontella sinensis complete chloroplast genome
          Length = 119704

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 505   acttttttgatttgataagatt 526
             ||||||||||||||||||||||
Sbjct: 32082 acttttttgatttgataagatt 32103
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>emb|AL161546.2|ATCHRIV46 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46
          Length = 198788

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                         
Query: 442   aggtgaacaactggaataggtttaattgcaacagtggggggactctggttgagaagtgct 501
             ||||||||||||||||||| || |||   |||| ||| |||||  | || ||||| ||||
Sbjct: 61194 aggtgaacaactggaatagattcaatgtgaacactggagggaccttagtggagaaatgct 61253

                           
Query: 502   gccacttttttgat 515
             ||||||| ||||||
Sbjct: 61254 gccacttctttgat 61267
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>gb|AF433669.1| Rhizobium tropici strain CIAT899 hypothetical transmembrane protein
            gene, partial cds; and LpiA (lpiA) and AtvA precursor
            (atvA) genes, complete cds
          Length = 5077

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 225  tccctcctccttggtctccgtc 246
            ||||||||||||||||||||||
Sbjct: 3121 tccctcctccttggtctccgtc 3100
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>ref|XM_466075.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1910

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 136 tccacaacctcgcccacctcg 156
           |||||||||||||||||||||
Sbjct: 932 tccacaacctcgcccacctcg 952
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 136      tccacaacctcgcccacctcg 156
                |||||||||||||||||||||
Sbjct: 19472047 tccacaacctcgcccacctcg 19472027
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                          
Query: 451    actggaataggtttaattgcaacagtggggggactctggttgagaagtgctgccactttt 510
              |||||||  |||| || |||||||  || ||||| ||||| |||||||||||||| ||||
Sbjct: 769851 actggaaccggttcaactgcaacacgggcgggacgctggtcgagaagtgctgccattttt 769910

               
Query: 511    t 511
              |
Sbjct: 769911 t 769911
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>dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0476H10
          Length = 151703

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 136   tccacaacctcgcccacctcg 156
             |||||||||||||||||||||
Sbjct: 89574 tccacaacctcgcccacctcg 89554
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>gb|AF165939.1|AF165939 Citrus limon vacuolar V-H+ATPase subunit E mRNA, complete cds
          Length = 1057

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 509 ttttgatttgataagattgtt 529
           |||||||||||||||||||||
Sbjct: 110 ttttgatttgataagattgtt 90
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>dbj|AK100984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145D01, full
           insert sequence
          Length = 1910

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 136 tccacaacctcgcccacctcg 156
           |||||||||||||||||||||
Sbjct: 932 tccacaacctcgcccacctcg 952
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>gb|AC112971.8| Mus musculus chromosome 1, clone RP24-444M12, complete sequence
          Length = 161310

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     gagagggaggaggggcagcc 68
              ||||||||||||||||||||
Sbjct: 112675 gagagggaggaggggcagcc 112656
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>gb|AC109162.12| Mus musculus chromosome 7, clone RP24-177G14, complete sequence
          Length = 176990

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    gtgcaagtcggattagaata 334
              ||||||||||||||||||||
Sbjct: 174522 gtgcaagtcggattagaata 174503
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    tgcgtcacctgcctcgccga 211
              ||||||||||||||||||||
Sbjct: 842238 tgcgtcacctgcctcgccga 842257
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>ref|XM_948455.1| Theileria annulata strain Ankara hypothetical protein (TA09780)
           partial mRNA
          Length = 5355

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 517 tgataagattgtttgcagat 536
           ||||||||||||||||||||
Sbjct: 641 tgataagattgtttgcagat 622
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>ref|XM_948459.1| Theileria annulata strain Ankara hypothetical protein (TA17500)
           partial mRNA
          Length = 1755

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 517 tgataagattgtttgcagat 536
           ||||||||||||||||||||
Sbjct: 752 tgataagattgtttgcagat 733
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>gb|AC119803.10| Mus musculus chromosome 6, clone RP23-124H21, complete sequence
          Length = 197762

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     gggaggaggggcagccatgg 72
              ||||||||||||||||||||
Sbjct: 119448 gggaggaggggcagccatgg 119429
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>emb|AL513484.6| Human DNA sequence from clone RP13-223P22 on chromosome Xq11.1-13.1,
             complete sequence
          Length = 59637

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 263   cctgccacctccccaggtca 282
             ||||||||||||||||||||
Sbjct: 14804 cctgccacctccccaggtca 14823
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>emb|AL392083.17| Human DNA sequence from clone RP11-29A19 on chromosome 10 Contains the
             3' end of the gene for double-stranded RNA specific
             adenosine deaminase (ADAR3) (FLJ30545 FLJ25034 FLJ36975)
             and three CpG islands, complete sequence
          Length = 164741

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    gggaggaggggcagccatgg 72
             ||||||||||||||||||||
Sbjct: 42463 gggaggaggggcagccatgg 42444
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>gb|AC012366.10| Homo sapiens BAC clone RP11-466M21 from 2, complete sequence
          Length = 197775

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    tccctcctccttggtctccg 244
              ||||||||||||||||||||
Sbjct: 190414 tccctcctccttggtctccg 190433
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>emb|CR759771.5| Zebrafish DNA sequence from clone DKEY-261N3 in linkage group 19,
             complete sequence
          Length = 89436

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 431   tttccttgttaaggtgaacaactg 454
             ||||||| ||||||||||||||||
Sbjct: 22439 tttcctttttaaggtgaacaactg 22416
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>gb|AY609600.1| Sus scrofa clone Clu_204757.scr.msk.p1.Contig1, mRNA sequence
          Length = 904

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 53  gggaggaggggcagccatgg 72
           ||||||||||||||||||||
Sbjct: 461 gggaggaggggcagccatgg 442
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>gb|AC153853.4| Mus musculus  BAC RP23-341J13 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 194037

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    gggaggaggggcagccatgg 72
             ||||||||||||||||||||
Sbjct: 97533 gggaggaggggcagccatgg 97552
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 149     ccacctcgccggagaagtcg 168
               ||||||||||||||||||||
Sbjct: 1150970 ccacctcgccggagaagtcg 1150951
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>gb|AC171210.1| Mus musculus BAC clone RP23-36D15 from chromosome 7, complete sequence
          Length = 221010

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 315    gtgcaagtcggattagaata 334
              ||||||||||||||||||||
Sbjct: 163533 gtgcaagtcggattagaata 163552
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>emb|AL773591.7| Pig DNA sequence from clone XX-35B1, complete sequence
          Length = 118404

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    gggaggaggggcagccatgg 72
             ||||||||||||||||||||
Sbjct: 65740 gggaggaggggcagccatgg 65721


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,251,004
Number of Sequences: 3902068
Number of extensions: 4251004
Number of successful extensions: 83710
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 83474
Number of HSP's gapped (non-prelim): 232
length of query: 579
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 556
effective length of database: 17,143,297,704
effective search space: 9531673523424
effective search space used: 9531673523424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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