ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal18p02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483211.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1507 Score = 222 bits (112), Expect = 2e-55 Identities = 142/152 (93%) Strand = Plus / Plus Query: 1 ccaagtcggtgcgcgtcttcttcgactggaaggactacctgaagttctacaagatgggca 60 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 761 ccaagtcggtgcgggtcttcttcgactggaaggactacctcaagttctacaagatgggca 820 Query: 61 cctactggccctacacgccgtccatccagctcctctacggcctacgcgccggcctcgacc 120 |||||||||||||||| || ||||||||||||||||||||||| ||| ||| |||||||| Sbjct: 821 cctactggccctacaccccatccatccagctcctctacggcctccgcaccgccctcgacc 880 Query: 121 tcctcttcgaggagggcctcgacaacgtcatc 152 || |||||||||| |||||||| ||||||||| Sbjct: 881 tcatcttcgaggaaggcctcgagaacgtcatc 912
>ref|XM_507283.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1345_D02.38 mRNA Length = 1567 Score = 222 bits (112), Expect = 2e-55 Identities = 142/152 (93%) Strand = Plus / Plus Query: 1 ccaagtcggtgcgcgtcttcttcgactggaaggactacctgaagttctacaagatgggca 60 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 753 ccaagtcggtgcgggtcttcttcgactggaaggactacctcaagttctacaagatgggca 812 Query: 61 cctactggccctacacgccgtccatccagctcctctacggcctacgcgccggcctcgacc 120 |||||||||||||||| || ||||||||||||||||||||||| ||| ||| |||||||| Sbjct: 813 cctactggccctacaccccatccatccagctcctctacggcctccgcaccgccctcgacc 872 Query: 121 tcctcttcgaggagggcctcgacaacgtcatc 152 || |||||||||| |||||||| ||||||||| Sbjct: 873 tcatcttcgaggaaggcctcgagaacgtcatc 904
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 222 bits (112), Expect = 2e-55 Identities = 142/152 (93%) Strand = Plus / Minus Query: 1 ccaagtcggtgcgcgtcttcttcgactggaaggactacctgaagttctacaagatgggca 60 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 24821900 ccaagtcggtgcgggtcttcttcgactggaaggactacctcaagttctacaagatgggca 24821841 Query: 61 cctactggccctacacgccgtccatccagctcctctacggcctacgcgccggcctcgacc 120 |||||||||||||||| || ||||||||||||||||||||||| ||| ||| |||||||| Sbjct: 24821840 cctactggccctacaccccatccatccagctcctctacggcctccgcaccgccctcgacc 24821781 Query: 121 tcctcttcgaggagggcctcgacaacgtcatc 152 || |||||||||| |||||||| ||||||||| Sbjct: 24821780 tcatcttcgaggaaggcctcgagaacgtcatc 24821749 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 ctcgacctcctcttcgaggag 134 ||||||||||||||||||||| Sbjct: 9175049 ctcgacctcctcttcgaggag 9175029
>dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1345_D02 Length = 159613 Score = 222 bits (112), Expect = 2e-55 Identities = 142/152 (93%) Strand = Plus / Minus Query: 1 ccaagtcggtgcgcgtcttcttcgactggaaggactacctgaagttctacaagatgggca 60 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 122701 ccaagtcggtgcgggtcttcttcgactggaaggactacctcaagttctacaagatgggca 122642 Query: 61 cctactggccctacacgccgtccatccagctcctctacggcctacgcgccggcctcgacc 120 |||||||||||||||| || ||||||||||||||||||||||| ||| ||| |||||||| Sbjct: 122641 cctactggccctacaccccatccatccagctcctctacggcctccgcaccgccctcgacc 122582 Query: 121 tcctcttcgaggagggcctcgacaacgtcatc 152 || |||||||||| |||||||| ||||||||| Sbjct: 122581 tcatcttcgaggaaggcctcgagaacgtcatc 122550
>dbj|AP004190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1506_F01 Length = 121202 Score = 222 bits (112), Expect = 2e-55 Identities = 142/152 (93%) Strand = Plus / Minus Query: 1 ccaagtcggtgcgcgtcttcttcgactggaaggactacctgaagttctacaagatgggca 60 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 26346 ccaagtcggtgcgggtcttcttcgactggaaggactacctcaagttctacaagatgggca 26287 Query: 61 cctactggccctacacgccgtccatccagctcctctacggcctacgcgccggcctcgacc 120 |||||||||||||||| || ||||||||||||||||||||||| ||| ||| |||||||| Sbjct: 26286 cctactggccctacaccccatccatccagctcctctacggcctccgcaccgccctcgacc 26227 Query: 121 tcctcttcgaggagggcctcgacaacgtcatc 152 || |||||||||| |||||||| ||||||||| Sbjct: 26226 tcatcttcgaggaaggcctcgagaacgtcatc 26195
>dbj|AK099206.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049F20, full insert sequence Length = 1321 Score = 222 bits (112), Expect = 2e-55 Identities = 142/152 (93%) Strand = Plus / Plus Query: 1 ccaagtcggtgcgcgtcttcttcgactggaaggactacctgaagttctacaagatgggca 60 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 527 ccaagtcggtgcgggtcttcttcgactggaaggactacctcaagttctacaagatgggca 586 Query: 61 cctactggccctacacgccgtccatccagctcctctacggcctacgcgccggcctcgacc 120 |||||||||||||||| || ||||||||||||||||||||||| ||| ||| |||||||| Sbjct: 587 cctactggccctacaccccatccatccagctcctctacggcctccgcaccgccctcgacc 646 Query: 121 tcctcttcgaggagggcctcgacaacgtcatc 152 || |||||||||| |||||||| ||||||||| Sbjct: 647 tcatcttcgaggaaggcctcgagaacgtcatc 678
>dbj|AK065126.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P06, full insert sequence Length = 1507 Score = 222 bits (112), Expect = 2e-55 Identities = 142/152 (93%) Strand = Plus / Plus Query: 1 ccaagtcggtgcgcgtcttcttcgactggaaggactacctgaagttctacaagatgggca 60 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 761 ccaagtcggtgcgggtcttcttcgactggaaggactacctcaagttctacaagatgggca 820 Query: 61 cctactggccctacacgccgtccatccagctcctctacggcctacgcgccggcctcgacc 120 |||||||||||||||| || ||||||||||||||||||||||| ||| ||| |||||||| Sbjct: 821 cctactggccctacaccccatccatccagctcctctacggcctccgcaccgccctcgacc 880 Query: 121 tcctcttcgaggagggcctcgacaacgtcatc 152 || |||||||||| |||||||| ||||||||| Sbjct: 881 tcatcttcgaggaaggcctcgagaacgtcatc 912
>dbj|AK064774.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000A23, full insert sequence Length = 1567 Score = 222 bits (112), Expect = 2e-55 Identities = 142/152 (93%) Strand = Plus / Plus Query: 1 ccaagtcggtgcgcgtcttcttcgactggaaggactacctgaagttctacaagatgggca 60 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 753 ccaagtcggtgcgggtcttcttcgactggaaggactacctcaagttctacaagatgggca 812 Query: 61 cctactggccctacacgccgtccatccagctcctctacggcctacgcgccggcctcgacc 120 |||||||||||||||| || ||||||||||||||||||||||| ||| ||| |||||||| Sbjct: 813 cctactggccctacaccccatccatccagctcctctacggcctccgcaccgccctcgacc 872 Query: 121 tcctcttcgaggagggcctcgacaacgtcatc 152 || |||||||||| |||||||| ||||||||| Sbjct: 873 tcatcttcgaggaaggcctcgagaacgtcatc 904
>gb|AY107617.1| Zea mays PCO084394 mRNA sequence Length = 1016 Score = 168 bits (85), Expect = 3e-39 Identities = 127/141 (90%) Strand = Plus / Plus Query: 9 gtgcgcgtcttcttcgactggaaggactacctgaagttctacaagatgggcacctactgg 68 |||||||||||||||||||||||||||||||| | ||||||| | |||||||| |||||| Sbjct: 241 gtgcgcgtcttcttcgactggaaggactacctcaggttctacgacatgggcacgtactgg 300 Query: 69 ccctacacgccgtccatccagctcctctacggcctacgcgccggcctcgacctcctcttc 128 ||||||||||| ||||||||||||||||||||||| ||| ||| ||||||||| ||||| Sbjct: 301 ccctacacgccctccatccagctcctctacggcctccgcaccgcgctcgacctcatcttc 360 Query: 129 gaggagggcctcgacaacgtc 149 ||||| || || ||||||||| Sbjct: 361 gaggaagggctggacaacgtc 381
>gb|L34038.1|RICRMSO Oryza sativa manganese superoxide dismutase (rmsod1) mRNA, complete cds Length = 951 Score = 103 bits (52), Expect = 1e-19 Identities = 58/60 (96%) Strand = Plus / Plus Query: 44 gttctacaagatgggcacctactggccctacacgccgtccatccagctcctctacggcct 103 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 4 gttctacaagatgggcacctactggccctacaccccatccatccagctcctctacggcct 63
>gb|DQ177463.1| Spirodela polyrrhiza serine-glyoxylate aminotransferase mRNA, complete cds Length = 1378 Score = 87.7 bits (44), Expect = 9e-15 Identities = 107/128 (83%) Strand = Plus / Plus Query: 21 ttcgactggaaggactacctgaagttctacaagatgggcacctactggccctacacgccg 80 ||||||||||| |||||||| ||||||||||||||||| || |||||||| ||||| ||| Sbjct: 729 ttcgactggaacgactacctcaagttctacaagatggggacttactggccgtacaccccg 788 Query: 81 tccatccagctcctctacggcctacgcgccggcctcgacctcctcttcgaggagggcctc 140 ||||| || || || || || || || || | || |||||| | ||||||||||||||| Sbjct: 789 tccattcaactgctttatgggcttcgagctgctctggacctcatattcgaggagggcctc 848 Query: 141 gacaacgt 148 || ||||| Sbjct: 849 gagaacgt 856
>gb|AF039000.1|AF039000 Fritillaria agrestis putative serine-glyoxylate aminotransferase (SGA) mRNA, complete cds Length = 1487 Score = 69.9 bits (35), Expect = 2e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 18 ttcttcgactggaaggactacctgaagttctacaagatgggcacctactggccctacacg 77 |||||||||||||| |||||||| ||||| ||||| || || || |||||||||||||| Sbjct: 809 ttcttcgactggaatgactacctaaagttttacaaaattggtacttactggccctacaca 868 Query: 78 ccgtccatcca 88 || |||||||| Sbjct: 869 ccttccatcca 879
>gb|AC141111.25| Medicago truncatula clone mth2-20c17, complete sequence Length = 113836 Score = 65.9 bits (33), Expect = 3e-08 Identities = 57/65 (87%) Strand = Plus / Minus Query: 33 gactacctgaagttctacaagatgggcacctactggccctacacgccgtccatccagctc 92 |||||||||||||||||||||||||| || || ||||| ||||| || ||||| ||||| Sbjct: 63345 gactacctgaagttctacaagatgggaacttattggccatacactccttccattcagctt 63286 Query: 93 ctcta 97 ||||| Sbjct: 63285 ctcta 63281
>gb|AY354209.1| Cucumis melo Hemed aminotransferase 2 mRNA, complete cds Length = 1436 Score = 46.1 bits (23), Expect = 0.030 Identities = 59/71 (83%) Strand = Plus / Plus Query: 18 ttcttcgactggaaggactacctgaagttctacaagatgggcacctactggccctacacg 77 ||||| |||||||||||||| || |||||||| || | || || |||||||| ||||| Sbjct: 897 ttctttgactggaaggactatctcaagttctataacttaggaacatactggccttacact 956 Query: 78 ccgtccatcca 88 || |||||||| Sbjct: 957 ccttccatcca 967
>gb|AY354207.1| Cucumis melo Ananas Yokneam aminotransferase 2 mRNA, complete cds Length = 1230 Score = 46.1 bits (23), Expect = 0.030 Identities = 59/71 (83%) Strand = Plus / Plus Query: 18 ttcttcgactggaaggactacctgaagttctacaagatgggcacctactggccctacacg 77 ||||| |||||||||||||| || |||||||| || | || || |||||||| ||||| Sbjct: 691 ttctttgactggaaggactatctcaagttctataacttaggaacatactggccttacact 750 Query: 78 ccgtccatcca 88 || |||||||| Sbjct: 751 ccttccatcca 761
>gb|AF461048.1| Cucumis melo aminotransferase 2 mRNA, complete cds Length = 1543 Score = 46.1 bits (23), Expect = 0.030 Identities = 59/71 (83%) Strand = Plus / Plus Query: 18 ttcttcgactggaaggactacctgaagttctacaagatgggcacctactggccctacacg 77 ||||| |||||||||||||| || |||||||| || | || || |||||||| ||||| Sbjct: 820 ttctttgactggaaggactatctcaagttctataacttaggaacatactggccttacact 879 Query: 78 ccgtccatcca 88 || |||||||| Sbjct: 880 ccttccatcca 890
>ref|XM_481004.1| Oryza sativa (japonica cultivar-group), mRNA Length = 492 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Plus Query: 114 ctcgacctcctcttcgaggag 134 ||||||||||||||||||||| Sbjct: 262 ctcgacctcctcttcgaggag 282
>gb|DQ167250.1| Glycine max enzymatic resistance protein mRNA, complete cds Length = 1517 Score = 42.1 bits (21), Expect = 0.47 Identities = 30/33 (90%) Strand = Plus / Plus Query: 18 ttcttcgactggaaggactacctgaagttctac 50 ||||| |||||||| ||||||||||| |||||| Sbjct: 836 ttctttgactggaaagactacctgaaattctac 868
>dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0012K14 Length = 155544 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 ctcgacctcctcttcgaggag 134 ||||||||||||||||||||| Sbjct: 110543 ctcgacctcctcttcgaggag 110523
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ccctacacgccgtccatcca 88 |||||||||||||||||||| Sbjct: 1175113 ccctacacgccgtccatcca 1175094
>emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 267509 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 aaggactacctgaagttctacaag 53 ||||| |||||||||||||||||| Sbjct: 189008 aaggagtacctgaagttctacaag 189031
>gb|AY122632.1| Bodo saltans strain Konstanz heat shock protein 90 (HSP-90) gene, partial cds Length = 1900 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 aggactacctgaagttctac 50 |||||||||||||||||||| Sbjct: 1125 aggactacctgaagttctac 1144
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 1.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 117 gacctcctcttcgaggagggcctcgaca 144 ||||||||||| ||||||||| |||||| Sbjct: 2193189 gacctcctcttggaggagggcgtcgaca 2193162
>gb|AC141887.5| Mus musculus BAC clone RP23-478L20 from chromosome 7, complete sequence Length = 163916 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 gaaggactacctgaagttc 47 ||||||||||||||||||| Sbjct: 133290 gaaggactacctgaagttc 133308
>gb|AC152924.1| Tribolium castaneum BAC T.cast_C6F3 (Clemson University Genomics Institute Tribolium castaneum BAC Library (Red Flour Beetle)) complete sequence Length = 91275 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 aagtcggtgcgcgtcttct 21 ||||||||||||||||||| Sbjct: 9897 aagtcggtgcgcgtcttct 9879
>gb|CP000146.1| Rhodobacter sphaeroides 2.4.1 plasmid C, complete sequence Length = 105284 Score = 38.2 bits (19), Expect = 7.3 Identities = 25/27 (92%) Strand = Plus / Plus Query: 57 ggcacctactggccctacacgccgtcc 83 ||||||||||| |||||||||||||| Sbjct: 16245 ggcacctactgcacctacacgccgtcc 16271
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 62 ctactggccctacacgccg 80 ||||||||||||||||||| Sbjct: 547175 ctactggccctacacgccg 547157
>ref|XM_964588.1| PREDICTED: Tribolium castaneum similar to CG16941-PA (LOC658179), mRNA Length = 2280 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 aagtcggtgcgcgtcttct 21 ||||||||||||||||||| Sbjct: 851 aagtcggtgcgcgtcttct 869
>gb|U60315.1|MCU60315 Molluscum contagiosum virus subtype 1, complete genome Length = 190289 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 ggtgcgcgtcttcttcgac 26 ||||||||||||||||||| Sbjct: 111324 ggtgcgcgtcttcttcgac 111342
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 134 gggcctcgacaacgtcatc 152 ||||||||||||||||||| Sbjct: 4234374 gggcctcgacaacgtcatc 4234392
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 122 cctcttcgaggagggcctc 140 ||||||||||||||||||| Sbjct: 1651684 cctcttcgaggagggcctc 1651666
>gb|AC073912.38| Homo sapiens 12 BAC RP11-989F5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 211550 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 109 ccggcctcgacctcctcttcgag 131 |||||||||||| |||||||||| Sbjct: 138310 ccggcctcgaccccctcttcgag 138288
>emb|Y07864.1|MEMXAR M.extorquens mxaR gene Length = 1985 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 107 cgccggcctcgacctcctc 125 ||||||||||||||||||| Sbjct: 749 cgccggcctcgacctcctc 731
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 121 tcctcttcgaggagggcctcgac 143 |||| |||||||||||||||||| Sbjct: 660391 tcctgttcgaggagggcctcgac 660369 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 868,479 Number of Sequences: 3902068 Number of extensions: 868479 Number of successful extensions: 70445 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70018 Number of HSP's gapped (non-prelim): 427 length of query: 152 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 131 effective length of database: 17,151,101,840 effective search space: 2246794341040 effective search space used: 2246794341040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
