ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal19d16 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK099561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034J20, full insert sequence Length = 1002 Score = 341 bits (172), Expect = 1e-90 Identities = 301/344 (87%) Strand = Plus / Plus Query: 152 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 211 ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| |||||||| Sbjct: 252 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 311 Query: 212 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 271 || || ||||||| |||| |||||||||| |||||||||||||||||||| | ||||| Sbjct: 312 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 371 Query: 272 gccgacaccgagttcgacatgattgggcagaacgccatgaaagagctcgatcaaattggg 331 || |||||||||||||| ||||||| |||||||||||||||||||| ||| || ||||| Sbjct: 372 gcggacaccgagttcgatctgattggccagaacgccatgaaagagcttgatgaagttggg 431 Query: 332 gaccagataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatg 391 ||||||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | Sbjct: 432 gaccagataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagtt 491 Query: 392 caaaggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaa 451 ||||||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| || Sbjct: 492 caaaggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgag 551 Query: 452 gaggagaaaaacgaaggcatgttcttcaaaagccttggcaaggt 495 |||||||||| ||||| |||||||||||||||||||| ||||| Sbjct: 552 aaggagaaaaatgaaggtatgttcttcaaaagccttgggaaggt 595
>ref|NM_190643.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 597 Score = 305 bits (154), Expect = 8e-80 Identities = 265/302 (87%) Strand = Plus / Plus Query: 194 atgcttcagacgcagaaggtccggatcacaaacttcctggacgagcggtctgcttacctg 253 ||||||||| |||||||||| || ||||||| |||| |||||||||| |||||||||||| Sbjct: 1 atgcttcaggcgcagaaggtgcgcatcacaagcttcttggacgagcgctctgcttacctg 60 Query: 254 accaagttcaccaaggacgccgacaccgagttcgacatgattgggcagaacgccatgaaa 313 |||||||| | ||||| || |||||||||||||| ||||||| ||||||||||||||| Sbjct: 61 accaagtttgcgaaggatgcggacaccgagttcgatctgattggccagaacgccatgaaa 120 Query: 314 gagctcgatcaaattggggaccagataatggagcgtctcgacagcaagatgcagtcctac 373 ||||| ||| || |||||||||||||||||||| | || ||||||||||||||| ||| Sbjct: 121 gagcttgatgaagttggggaccagataatggagaggctggacagcaagatgcaggccttt 180 Query: 374 gaggagacagctgaaatgcaaaggcaggagatagaaatgaatgagagagtgttagaagac 433 |||||||| |||||| | ||||||||||||||||||||||| ||||| ||| | |||||| Sbjct: 181 gaggagactgctgaagttcaaaggcaggagatagaaatgaacgagagggtgcttgaagac 240 Query: 434 ttcgaagactggatcgaagaggagaaaaacgaaggcatgttcttcaaaagccttggcaag 493 |||||||| ||||| || |||||||||| ||||| |||||||||||||||||||| ||| Sbjct: 241 ttcgaagattggattgagaaggagaaaaatgaaggtatgttcttcaaaagccttgggaag 300 Query: 494 gt 495 || Sbjct: 301 gt 302
>gb|AY112109.1| Zea mays CL26172_1 mRNA sequence Length = 768 Score = 272 bits (137), Expect = 1e-69 Identities = 245/281 (87%) Strand = Plus / Minus Query: 166 ccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaaggtccggatcacaaa 225 |||||||||||| |||||| | |||||||||||||||||||||||||| || |||||| | Sbjct: 569 ccagcaggaggttcttgcacagatcgccatgcttcagacgcagaaggtgcgcatcacaga 510 Query: 226 cttcctggacgagcggtctgcttacctgaccaagttcaccaaggacgccgacaccgagtt 285 |||| |||||||||| ||||||||||||||||||||| |||||||||||||| | ||||| Sbjct: 509 cttcttggacgagcgctctgcttacctgaccaagttcgccaaggacgccgactcggagtt 450 Query: 286 cgacatgattgggcagaacgccatgaaagagctcgatcaaattggggaccagataatgga 345 |||| ||||||||||||||||||||||||| || ||| |||| ||||||||| |||| Sbjct: 449 cgacctgattgggcagaacgccatgaaagaacttgatgccgttggtgaccagatactgga 390 Query: 346 gcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaaggcaggagat 405 | | ||||||||||||||||| ||| ||||||||| ||||| | ||| |||| ||||| Sbjct: 389 gaggctcgacagcaagatgcaagccttcgaggagacggctgaggtacaacggcaagagat 330 Query: 406 agaaatgaatgagagagtgttagaagacttcgaagactgga 446 ||||||||| || | |||||||| |||||||||||||||| Sbjct: 329 agaaatgaacgataaggtgttagaggacttcgaagactgga 289 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 472 gttcttcaaaagccttggcaaggtcaaa 499 |||||||||||||||||||||||||||| Sbjct: 263 gttcttcaaaagccttggcaaggtcaaa 236
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 186 bits (94), Expect = 5e-44 Identities = 163/186 (87%) Strand = Plus / Minus Query: 152 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 211 ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| |||||||| Sbjct: 36730209 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 36730150 Query: 212 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 271 || || ||||||| |||| |||||||||| |||||||||||||||||||| | ||||| Sbjct: 36730149 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 36730090 Query: 272 gccgacaccgagttcgacatgattgggcagaacgccatgaaagagctcgatcaaattggg 331 || |||||||||||||| ||||||| |||||||||||||||||||| ||| || ||||| Sbjct: 36730089 gcggacaccgagttcgatctgattggccagaacgccatgaaagagcttgatgaagttggg 36730030 Query: 332 gaccag 337 |||||| Sbjct: 36730029 gaccag 36730024 Score = 159 bits (80), Expect = 1e-35 Identities = 140/160 (87%) Strand = Plus / Minus Query: 336 agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 395 ||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | |||| Sbjct: 36729952 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 36729893 Query: 396 ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 455 ||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| || ||| Sbjct: 36729892 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 36729833 Query: 456 agaaaaacgaaggcatgttcttcaaaagccttggcaaggt 495 ||||||| ||||| |||||||||||||||||||| ||||| Sbjct: 36729832 agaaaaatgaaggtatgttcttcaaaagccttgggaaggt 36729793
>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529E05 Length = 134982 Score = 186 bits (94), Expect = 5e-44 Identities = 163/186 (87%) Strand = Plus / Minus Query: 152 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 211 ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| |||||||| Sbjct: 56524 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 56465 Query: 212 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 271 || || ||||||| |||| |||||||||| |||||||||||||||||||| | ||||| Sbjct: 56464 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 56405 Query: 272 gccgacaccgagttcgacatgattgggcagaacgccatgaaagagctcgatcaaattggg 331 || |||||||||||||| ||||||| |||||||||||||||||||| ||| || ||||| Sbjct: 56404 gcggacaccgagttcgatctgattggccagaacgccatgaaagagcttgatgaagttggg 56345 Query: 332 gaccag 337 |||||| Sbjct: 56344 gaccag 56339 Score = 159 bits (80), Expect = 1e-35 Identities = 140/160 (87%) Strand = Plus / Minus Query: 336 agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 395 ||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | |||| Sbjct: 56267 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 56208 Query: 396 ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 455 ||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| || ||| Sbjct: 56207 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 56148 Query: 456 agaaaaacgaaggcatgttcttcaaaagccttggcaaggt 495 ||||||| ||||| |||||||||||||||||||| ||||| Sbjct: 56147 agaaaaatgaaggtatgttcttcaaaagccttgggaaggt 56108
>dbj|AK105423.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-C01, full insert sequence Length = 3098 Score = 159 bits (80), Expect = 1e-35 Identities = 140/160 (87%) Strand = Plus / Minus Query: 336 agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 395 ||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | |||| Sbjct: 2482 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 2423 Query: 396 ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 455 ||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| || ||| Sbjct: 2422 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 2363 Query: 456 agaaaaacgaaggcatgttcttcaaaagccttggcaaggt 495 ||||||| ||||| |||||||||||||||||||| ||||| Sbjct: 2362 agaaaaatgaaggtatgttcttcaaaagccttgggaaggt 2323 Score = 137 bits (69), Expect = 4e-29 Identities = 120/137 (87%) Strand = Plus / Minus Query: 152 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 211 ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| |||||||| Sbjct: 2645 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 2586 Query: 212 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 271 || || ||||||| |||| |||||||||| |||||||||||||||||||| | ||||| Sbjct: 2585 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 2526 Query: 272 gccgacaccgagttcga 288 || |||||||||||||| Sbjct: 2525 gcggacaccgagttcga 2509
>dbj|AK101805.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K09, full insert sequence Length = 3051 Score = 159 bits (80), Expect = 1e-35 Identities = 140/160 (87%) Strand = Plus / Minus Query: 336 agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 395 ||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | |||| Sbjct: 2461 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 2402 Query: 396 ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 455 ||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| || ||| Sbjct: 2401 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 2342 Query: 456 agaaaaacgaaggcatgttcttcaaaagccttggcaaggt 495 ||||||| ||||| |||||||||||||||||||| ||||| Sbjct: 2341 agaaaaatgaaggtatgttcttcaaaagccttgggaaggt 2302 Score = 137 bits (69), Expect = 4e-29 Identities = 120/137 (87%) Strand = Plus / Minus Query: 152 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 211 ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| |||||||| Sbjct: 2609 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 2550 Query: 212 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 271 || || ||||||| |||| |||||||||| |||||||||||||||||||| | ||||| Sbjct: 2549 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 2490 Query: 272 gccgacaccgagttcga 288 || |||||||||||||| Sbjct: 2489 gcggacaccgagttcga 2473
>gb|AC162890.4| Mus musculus chromosome 3, clone RP23-362E13, complete sequence Length = 113095 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cctgaccaagttcaccaaggac 271 |||||||||||||||||||||| Sbjct: 38417 cctgaccaagttcaccaaggac 38396
>gb|AC125349.3| Mus musculus BAC clone RP23-394P9 from chromosome 3, complete sequence Length = 194060 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 250 cctgaccaagttcaccaaggac 271 |||||||||||||||||||||| Sbjct: 41344 cctgaccaagttcaccaaggac 41365
>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome Length = 2843201 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 498 aaaaacctcaaaacaatgagga 519 |||||||||||||||||||||| Sbjct: 1907320 aaaaacctcaaaacaatgagga 1907299
>dbj|AP007284.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT23F02, TM0183, complete sequence Length = 70173 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 167 cagcaggaggtgcttgcaaaaa 188 |||||||||||||||||||||| Sbjct: 15867 cagcaggaggtgcttgcaaaaa 15888
>ref|XM_322205.1| Neurospora crassa OR74A hypothetical protein (NCU00120.1) partial mRNA Length = 3714 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 ggaccagataatggagcgtctcga 354 |||||||||||||||| ||||||| Sbjct: 2173 ggaccagataatggagtgtctcga 2150
>ref|XM_952151.1| Neurospora crassa OR74A hypothetical protein (NCU00120.1) partial mRNA Length = 3714 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 ggaccagataatggagcgtctcga 354 |||||||||||||||| ||||||| Sbjct: 2173 ggaccagataatggagtgtctcga 2150
>gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, complete sequence Length = 183075 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 tgcagtgcatcaaagcagga 89 |||||||||||||||||||| Sbjct: 171766 tgcagtgcatcaaagcagga 171785
>ref|XM_390936.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG10760.1) partial mRNA Length = 2469 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 caagagcagctccgaagatg 125 |||||||||||||||||||| Sbjct: 1996 caagagcagctccgaagatg 1977
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 497 aaaaaacctcaaaacaatga 516 |||||||||||||||||||| Sbjct: 126929 aaaaaacctcaaaacaatga 126948
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 cggcggtgaccaacgccagcagga 174 |||||||||||| ||||||||||| Sbjct: 2704598 cggcggtgaccagcgccagcagga 2704621
>gb|AC074335.11| Mus Musculus Strain C57BL6/J Chromosome 18 BAC, RP23-127B9, complete sequence Length = 201643 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 cagtgcatcaaagcaggaggagat 95 ||||| |||||||||||||||||| Sbjct: 117112 cagtgaatcaaagcaggaggagat 117135
>gb|AC112507.7| Homo sapiens 3 BAC RP11-321C3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 184696 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 aaagccttggcaaggtcaaa 499 |||||||||||||||||||| Sbjct: 155140 aaagccttggcaaggtcaaa 155159
>gb|AE005913.1| Caulobacter crescentus CB15 section 239 of 359 of the complete genome Length = 13785 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 253 gaccaagttcaccaaggacgccga 276 ||||||||||| |||||||||||| Sbjct: 4339 gaccaagttcagcaaggacgccga 4362
>gb|AC107220.4| Homo sapiens BAC clone RP11-586L23 from 4, complete sequence Length = 67392 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 gccagcaggaggtgcttgcaaaaa 188 ||||||||| |||||||||||||| Sbjct: 59334 gccagcaggtggtgcttgcaaaaa 59357
>dbj|AB162342.1| Oncorhynchus mykiss genes, MHC class I a region, complete and partial cds Length = 103035 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 tcaaaagccttggcaaggtc 496 |||||||||||||||||||| Sbjct: 28871 tcaaaagccttggcaaggtc 28890
>gb|AC104801.4| Homo sapiens BAC clone RP11-356J12 from 2, complete sequence Length = 132644 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 447 tcgaagaggagaaaaacgaaggca 470 |||||||||||||||| ||||||| Sbjct: 6519 tcgaagaggagaaaaaagaaggca 6542
>gb|AC133565.5| Homo sapiens chromosome 16 clone RP11-895K13, complete sequence Length = 168538 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 38 ccctcgccgcgcagatcctccccgcgcc 65 ||||| ||||||||| |||||||||||| Sbjct: 138979 ccctccccgcgcagaccctccccgcgcc 139006
>gb|U51003.1|HSU51003 Homo sapiens DLX-2 (DLX-2) gene, complete cds Length = 3202 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 447 tcgaagaggagaaaaacgaaggca 470 |||||||||||||||| ||||||| Sbjct: 2515 tcgaagaggagaaaaaagaaggca 2492
>dbj|AB208823.1| Homo sapiens mRNA for distal-less homeo box 2 variant protein Length = 3163 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 447 tcgaagaggagaaaaacgaaggca 470 |||||||||||||||| ||||||| Sbjct: 1604 tcgaagaggagaaaaaagaaggca 1581 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,467,729 Number of Sequences: 3902068 Number of extensions: 4467729 Number of successful extensions: 101540 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101379 Number of HSP's gapped (non-prelim): 160 length of query: 529 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 506 effective length of database: 17,143,297,704 effective search space: 8674508638224 effective search space used: 8674508638224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
