ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal18o13 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 100 bits (249), Expect(2) = 4e-41 Identities = 49/49 (100%), Positives = 49/49 (100%) Frame = +3 Query: 3 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 149 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427 Score = 86.3 bits (212), Expect(2) = 4e-41 Identities = 38/38 (100%), Positives = 38/38 (100%) Frame = +2 Query: 197 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 310 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 80.5 bits (197), Expect(2) = 3e-29 Identities = 38/49 (77%), Positives = 44/49 (89%) Frame = +3 Query: 3 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 149 T++KLL YG MLVQEQ+NVKRVQLAD YMS+AALGDAN DA+K G+FYG Sbjct: 389 TIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437 Score = 66.6 bits (161), Expect(2) = 3e-29 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%) Frame = +2 Query: 194 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 310 GG+ AQQ G +PVPEGCTD A NYDPTARSDDGSC+Y F Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 79.0 bits (193), Expect(2) = 4e-29 Identities = 37/49 (75%), Positives = 44/49 (89%) Frame = +3 Query: 3 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 149 T EKL+EYG+MLV EQ+NVKRVQLA+TY+SQAALGDAN DA+ G+FYG Sbjct: 389 TYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437 Score = 67.8 bits (164), Expect(2) = 4e-29 Identities = 29/38 (76%), Positives = 33/38 (86%) Frame = +2 Query: 197 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 310 GKGAQQ LPVPEGCTD A+N+DPTARSDDG+C+Y F Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 78.6 bits (192), Expect(2) = 7e-28 Identities = 36/49 (73%), Positives = 45/49 (91%) Frame = +3 Query: 3 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 149 T++KL+EYG+MLVQEQ+NVKRVQLAD YMS AALGDAN+DA+ G+F+G Sbjct: 387 TLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435 Score = 63.9 bits (154), Expect(2) = 7e-28 Identities = 28/36 (77%), Positives = 30/36 (83%) Frame = +2 Query: 197 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 304 GK AQQ +LPV +GCTD AKNYDPTARSDDGSC Y Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 87.8 bits (216), Expect = 1e-17 Identities = 40/49 (81%), Positives = 46/49 (93%) Frame = +3 Query: 3 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 149 T+EKL+EYGHMLVQEQ+NVKRVQLAD Y+S+AALG AN DAMKTG+FYG Sbjct: 376 TIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 86.3 bits (212), Expect = 3e-17 Identities = 40/49 (81%), Positives = 46/49 (93%) Frame = +3 Query: 3 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 149 T+EKLLEYG+MLVQEQ+NVKRVQLAD Y+S+AALGDAN DAM TG+FYG Sbjct: 389 TIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 85.9 bits (211), Expect = 4e-17 Identities = 39/49 (79%), Positives = 47/49 (95%) Frame = +3 Query: 3 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 149 T+EKL+EYG+MLV+EQ+NVKRVQLA+ Y+S+AALGDAN DAMKTGSFYG Sbjct: 379 TIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 84.0 bits (206), Expect = 1e-16 Identities = 38/48 (79%), Positives = 46/48 (95%) Frame = +3 Query: 3 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 146 T+EKLLEYGHMLV EQ+NVKRVQLAD Y+++AALG+AN+DAMKTGSF+ Sbjct: 385 TIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 79.0 bits (193), Expect = 4e-15 Identities = 37/47 (78%), Positives = 44/47 (93%) Frame = +3 Query: 3 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 143 TVEKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG+F Sbjct: 393 TVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 79.0 bits (193), Expect = 4e-15 Identities = 36/47 (76%), Positives = 45/47 (95%) Frame = +3 Query: 3 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 143 T++KLL+YG+MLV+EQ+NVKRVQLAD YMS+AALGDANQDA+K G+F Sbjct: 389 TIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 78.2 bits (191), Expect = 8e-15 Identities = 36/48 (75%), Positives = 43/48 (89%) Frame = +3 Query: 3 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 146 T+EKLLEYG+MLVQEQ+NVKRVQLAD Y+ +AALGDAN DA+ GSF+ Sbjct: 393 TIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 75.5 bits (184), Expect = 5e-14 Identities = 33/48 (68%), Positives = 47/48 (97%) Frame = +3 Query: 3 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 146 +++KLL+YG+MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 391 SLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 75.1 bits (183), Expect = 6e-14 Identities = 35/45 (77%), Positives = 42/45 (93%) Frame = +3 Query: 3 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 137 T+EKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG Sbjct: 388 TLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 72.0 bits (175), Expect = 5e-13 Identities = 33/48 (68%), Positives = 44/48 (91%) Frame = +3 Query: 3 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 146 T++KLL Y MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 393 TLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 42.7 bits (99), Expect = 4e-04 Identities = 19/24 (79%), Positives = 23/24 (95%) Frame = +3 Query: 3 TVEKLLEYGHMLVQEQDNVKRVQL 74 T+EKLLEYG+MLV EQ+NVKRV+L Sbjct: 386 TIEKLLEYGNMLVMEQENVKRVKL 409
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 42.7 bits (99), Expect = 4e-04 Identities = 20/30 (66%), Positives = 24/30 (80%) Frame = +3 Query: 15 LLEYGHMLVQEQDNVKRVQLADTYMSQAAL 104 L++YG LV EQ+NVKRVQLAD Y+S A L Sbjct: 365 LIKYGKSLVDEQENVKRVQLADAYLSGAEL 394
>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor| XE12/XE47) Length = 658 Score = 28.9 bits (63), Expect = 5.3 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Frame = +2 Query: 137 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 295 F L + N PT S GGG G ++ T P G D N +D DG+ Sbjct: 26 FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 28.5 bits (62), Expect = 6.9 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = -1 Query: 293 CRRRSLPLGRSSWHFGRCNLP 231 CRR P GR H GRCN P Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134
>CORIN_HUMAN (Q9Y5Q5) Atrial natriuteric peptide-converting enzyme (EC 3.4.21.-)| (pro-ANP-converting enzyme) (Corin) (Heart-specific serine proteinase ATC2) (Transmembrane protease, serine 10) Length = 1042 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = -1 Query: 179 RWWVCMENFLTVEGTSLHRILVSITQSCLAHVGVSKLHT 63 RW N+ ++ GT+LH +LV+ QSC + +S L T Sbjct: 749 RWLTLHSNWESLNGTTLHELLVN-GQSCESRSKISLLCT 786 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,132,001 Number of Sequences: 219361 Number of extensions: 1183560 Number of successful extensions: 3054 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2979 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3053 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
