ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal18o13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 759 bits (383), Expect = 0.0 Identities = 423/430 (98%), Gaps = 5/430 (1%) Strand = Plus / Plus Query: 1 tgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1274 tgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtca 1333 Query: 61 agcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1334 agcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagg 1393 Query: 121 atgcgatgaagactggttccttctacggttagaaaattctccatac-acacccaccatct 179 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 1394 atgcgatgaagactggttccttctacggttagaaaattctccatacaacacccaccatct 1453 Query: 180 cttgctgcataggaggaggtaaaggagcacagcaaggtactttgcccg-tgccggaaggt 238 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1454 cttgctgcataggaggaggtaaaggagcacagcaaggtactttgcccgatgccggaaggt 1513 Query: 239 tgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacg-acggcagctg 297 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1514 tgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgaacggcagctg 1573 Query: 298 cctttacaccttttaagcatgccacttttaatatctgatgttttacctac-ctaagtccg 356 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1574 cctttacaccttttaagcatgccacttttaatatctgatgttttacctacactaagtccg 1633 Query: 357 catcgnatccaagcgattgctgggcatgttttgttaatatatctctaaat-atattgagt 415 ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct: 1634 catcgcatccaagcgattgctgggcatgttttgttaatatatctctaaataatattgtgt 1693 Query: 416 atacccattt 425 |||||||||| Sbjct: 1694 atacccattt 1703
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 609 bits (307), Expect = e-171 Identities = 402/431 (93%), Gaps = 11/431 (2%) Strand = Plus / Plus Query: 1 tgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtca 60 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 344 tgacagtggagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtca 403 Query: 61 agcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 404 agcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagg 463 Query: 121 atgcgatgaagactggttccttctacggttagaaaattctccatacacacccaccatctc 180 ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct: 464 atgcgatgaagactggtaccttctacggttagaacattctccatacacacccaccatctc 523 Query: 181 ttgctgcataggaggaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttg 240 |||||||||||||||||||||||| |||||||||||||||||||| || |||| ||| || Sbjct: 524 ttgctgcataggaggaggtaaaggggcacagcaaggtactttgcctgtaccggcaggatg 583 Query: 241 caccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcct 300 ||||||||| | ||||||||||| |||||||||||| ||||| ||||||||||||||||| Sbjct: 584 caccgaccagactgccaagaacttcgacccaacggcgaggagtgacgacggcagctgcct 643 Query: 301 ttacaccttttaagcatgccacttttaatatctgatgttttacc-----tacctaagt-c 354 ||||||||||||||||||||| ||||||||||||||||||| | ||||||||| | Sbjct: 644 ttacaccttttaagcatgcca-atttaatatctgatgttttatcctttgtacctaagtac 702 Query: 355 cgcatcgnatccaagcgattgctgggcatgttttgttaatatatctctaaatatattgag 414 ||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 703 cgcatcgcatccaagcgattgctgggcatgttttgttaatata----taaagatattgag 758 Query: 415 tatacccattt 425 |||||| |||| Sbjct: 759 tatacctattt 769
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 605 bits (305), Expect = e-170 Identities = 381/404 (94%), Gaps = 7/404 (1%) Strand = Plus / Plus Query: 1 tgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtca 60 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1194 tgacagtggagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtca 1253 Query: 61 agcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1254 agcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagg 1313 Query: 121 atgcgatgaagactggttccttctacggttagaaaattctccatacacacccaccatctc 180 ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1314 atgcgatgaagactggtaccttctacggttagaacattctccatacacacccaccatctc 1373 Query: 181 ttgctgcataggaggaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttg 240 |||||||||||||||||||||||| |||||||||||||||||||| || |||| ||| || Sbjct: 1374 ttgctgcataggaggaggtaaaggggcacagcaaggtactttgcctgtaccggcaggatg 1433 Query: 241 caccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcct 300 ||||||||| | ||||||||||| |||||||||||| ||||| ||||||||||||||||| Sbjct: 1434 caccgaccagactgccaagaacttcgacccaacggcgaggagtgacgacggcagctgcct 1493 Query: 301 ttacaccttttaagcatgccacttttaatatctgatgttttacc-----tacctaagt-c 354 ||||||||||||||||||||| ||||||||||||||||||| | ||||||||| | Sbjct: 1494 ttacaccttttaagcatgcca-atttaatatctgatgttttatcctttgtacctaagtac 1552 Query: 355 cgcatcgnatccaagcgattgctgggcatgttttgttaatatat 398 ||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1553 cgcatcgcatccaagcgattgctgggcatgttttgttaatatat 1596
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 444 bits (224), Expect = e-121 Identities = 229/231 (99%) Strand = Plus / Plus Query: 195 gaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatg 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7523 gaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatg 7582 Query: 255 ccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaag 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7583 ccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaag 7642 Query: 315 catgccacttttaatatctgatgttttacctacctaagtccgcatcgnatccaagcgatt 374 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 7643 catgccacttttaatatctgatgttttacctacctaagtccgcatcgcatccaagcgatt 7702 Query: 375 gctgggcatgttttgttaatatatctctaaatatattgagtatacccattt 425 |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 7703 gctgggcatgttttgttaatatatctctaaatatattgtgtatacccattt 7753 Score = 394 bits (199), Expect = e-107 Identities = 199/199 (100%) Strand = Plus / Plus Query: 1 tgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7157 tgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtca 7216 Query: 61 agcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7217 agcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagg 7276 Query: 121 atgcgatgaagactggttccttctacggttagaaaattctccatacacacccaccatctc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7277 atgcgatgaagactggttccttctacggttagaaaattctccatacacacccaccatctc 7336 Query: 181 ttgctgcataggaggaggt 199 ||||||||||||||||||| Sbjct: 7337 ttgctgcataggaggaggt 7355 Score = 73.8 bits (37), Expect = 4e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 21 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagct 73 |||||||| |||||||| |||||||||||||| || ||||||||||||||||| Sbjct: 3909 gagtacggccacatgctggtccaggagcaggagaacgtcaagcgtgtgcagct 3961
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 440 bits (222), Expect = e-120 Identities = 227/229 (99%) Strand = Plus / Plus Query: 197 ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1165 ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 1224 Query: 257 aagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaagca 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1225 aagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaagca 1284 Query: 317 tgccacttttaatatctgatgttttacctacctaagtccgcatcgnatccaagcgattgc 376 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1285 tgccacttttaatatctgatgttttacctacctaagtccgcatcgcatccaagcgattgc 1344 Query: 377 tgggcatgttttgttaatatatctctaaatatattgagtatacccattt 425 |||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1345 tgggcatgttttgttaatatatctctaaatatattgtgtatacccattt 1393 Score = 295 bits (149), Expect = 6e-77 Identities = 149/149 (100%) Strand = Plus / Plus Query: 1 tgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1019 tgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtca 1078 Query: 61 agcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1079 agcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagg 1138 Query: 121 atgcgatgaagactggttccttctacggt 149 ||||||||||||||||||||||||||||| Sbjct: 1139 atgcgatgaagactggttccttctacggt 1167
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 432 bits (218), Expect = e-118 Identities = 293/317 (92%), Gaps = 2/317 (0%) Strand = Plus / Plus Query: 9 gagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtg 68 |||||| |||| |||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 1213 gagaagttgctggagtacggccacatgcttgtccaggagcaggacaatgtcaagcgtgtg 1272 Query: 69 cagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatg 128 |||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||| ||| Sbjct: 1273 cagcttgcggacacttacatgagccaggcagctctgggtgatgcgaacaaggatgccatg 1332 Query: 129 aagactggttccttctacggttagaaaattctccatacacacccaccatctcttgctgca 188 |||||||||||||||||||||||||| | ||| ||||||| |||||||||||||||||| Sbjct: 1333 aagactggttccttctacggttagaacactcttcatacac--ccaccatctcttgctgca 1390 Query: 189 taggaggaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgacc 248 |||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||||| Sbjct: 1391 taggaggaggtaaaggagcacaacaaggcactttgcctgtgccggaaggttgtaccgacc 1450 Query: 249 aaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacacct 308 |||||||||||| ||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 1451 gggatgccaagaacttcgacccaaccgcgaggagcgacgacggcagctgcctttacacct 1510 Query: 309 tttaagcatgccacttt 325 ||||||||||||||||| Sbjct: 1511 tttaagcatgccacttt 1527
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 331 bits (167), Expect = 1e-87 Identities = 170/171 (99%) Strand = Plus / Plus Query: 1 tgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 tgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtca 197 Query: 61 agcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 agcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagg 257 Query: 121 atgcgatgaagactggttccttctacggttagaaaattctccatacacacc 171 |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 258 atgcgatgaagactggttccttctacggttagaacattctccatacacacc 308
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 208 bits (105), Expect = 1e-50 Identities = 132/141 (93%) Strand = Plus / Plus Query: 9 gagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtg 68 |||||| |||| |||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 1223 gagaagttgctggagtacggccacatgcttgtccaggagcaggacaatgtcaagcgtgtg 1282 Query: 69 cagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatg 128 |||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||| ||| Sbjct: 1283 cagcttgcggacacttacatgagccaggcagctctgggtgatgcgaacaaggatgccatg 1342 Query: 129 aagactggttccttctacggt 149 ||||||||||||||||||||| Sbjct: 1343 aagactggttccttctacggt 1363 Score = 176 bits (89), Expect = 4e-41 Identities = 119/129 (92%) Strand = Plus / Plus Query: 197 ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 256 |||||||||||||| ||||| |||||||| |||||||||||||| ||||||| ||||| Sbjct: 1361 ggtaaaggagcacaacaaggcactttgcctgtgccggaaggttgtaccgaccgggatgcc 1420 Query: 257 aagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaagca 316 ||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 1421 aagaacttcgacccaaccgcgaggagcgacgacggcagctgcctttacaccttttaagca 1480 Query: 317 tgccacttt 325 ||||||||| Sbjct: 1481 tgccacttt 1489
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Plus Query: 190 aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 246 ||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||| Sbjct: 1385 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1444 Query: 247 ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 306 || ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1445 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1504 Query: 307 cttttaagca 316 |||||||||| Sbjct: 1505 cttttaagca 1514 Score = 83.8 bits (42), Expect = 4e-13 Identities = 108/130 (83%) Strand = Plus / Plus Query: 21 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 80 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 1181 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 1240 Query: 81 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 140 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 1241 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 1300 Query: 141 ttctacggtt 150 |||||||||| Sbjct: 1301 ttctacggtt 1310
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Plus Query: 190 aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 246 ||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||| Sbjct: 1423 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1482 Query: 247 ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 306 || ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1483 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1542 Query: 307 cttttaagca 316 |||||||||| Sbjct: 1543 cttttaagca 1552 Score = 83.8 bits (42), Expect = 4e-13 Identities = 108/130 (83%) Strand = Plus / Plus Query: 21 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 80 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 1219 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 1278 Query: 81 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 140 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 1279 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 1338 Query: 141 ttctacggtt 150 |||||||||| Sbjct: 1339 ttctacggtt 1348
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Plus Query: 190 aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 246 ||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||| Sbjct: 1422 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1481 Query: 247 ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 306 || ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1482 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1541 Query: 307 cttttaagca 316 |||||||||| Sbjct: 1542 cttttaagca 1551 Score = 83.8 bits (42), Expect = 4e-13 Identities = 108/130 (83%) Strand = Plus / Plus Query: 21 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 80 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 1218 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 1277 Query: 81 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 140 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 1278 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 1337 Query: 141 ttctacggtt 150 |||||||||| Sbjct: 1338 ttctacggtt 1347
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Plus Query: 190 aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 246 ||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||| Sbjct: 1206 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1265 Query: 247 ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 306 || ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1266 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1325 Query: 307 cttttaagca 316 |||||||||| Sbjct: 1326 cttttaagca 1335 Score = 83.8 bits (42), Expect = 4e-13 Identities = 108/130 (83%) Strand = Plus / Plus Query: 21 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 80 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 1002 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 1061 Query: 81 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 140 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 1062 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 1121 Query: 141 ttctacggtt 150 |||||||||| Sbjct: 1122 ttctacggtt 1131
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Plus Query: 190 aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 246 ||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||| Sbjct: 1427 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1486 Query: 247 ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 306 || ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1487 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1546 Query: 307 cttttaagca 316 |||||||||| Sbjct: 1547 cttttaagca 1556 Score = 83.8 bits (42), Expect = 4e-13 Identities = 108/130 (83%) Strand = Plus / Plus Query: 21 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 80 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 1223 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 1282 Query: 81 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 140 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 1283 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 1342 Query: 141 ttctacggtt 150 |||||||||| Sbjct: 1343 ttctacggtt 1352
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 222 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 281 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 107252 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 107193 Query: 282 gcgacgacggcagctgcctttacaccttttaagca 316 ||||||||||||||||||||||||||||||||||| Sbjct: 107192 gcgacgacggcagctgcctttacaccttttaagca 107158 Score = 89.7 bits (45), Expect = 7e-15 Identities = 111/133 (83%) Strand = Plus / Minus Query: 21 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 80 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 108438 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 108379 Query: 81 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 140 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 108378 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 108319 Query: 141 ttctacggttaga 153 ||||||||||||| Sbjct: 108318 ttctacggttaga 108306 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 224 cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 283 |||||||||| || |||||||||||| ||| ||||||||||| || || |||||| Sbjct: 112127 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 112068 Query: 284 gacgacggcagctgc 298 ||||||||||||||| Sbjct: 112067 gacgacggcagctgc 112053
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 222 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 281 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 29133 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 29074 Query: 282 gcgacgacggcagctgcctttacaccttttaagca 316 ||||||||||||||||||||||||||||||||||| Sbjct: 29073 gcgacgacggcagctgcctttacaccttttaagca 29039 Score = 89.7 bits (45), Expect = 7e-15 Identities = 111/133 (83%) Strand = Plus / Minus Query: 21 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 80 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 30315 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 30256 Query: 81 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 140 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 30255 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 30196 Query: 141 ttctacggttaga 153 ||||||||||||| Sbjct: 30195 ttctacggttaga 30183 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 224 cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 283 |||||||||| || |||||||||||| ||| ||||||||||| || || |||||| Sbjct: 34004 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 33945 Query: 284 gacgacggcagctgc 298 ||||||||||||||| Sbjct: 33944 gacgacggcagctgc 33930
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 222 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 281 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 1426 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 1485 Query: 282 gcgacgacggcagctgcctttacaccttttaagca 316 ||||||||||||||||||||||||||||||||||| Sbjct: 1486 gcgacgacggcagctgcctttacaccttttaagca 1520 Score = 83.8 bits (42), Expect = 4e-13 Identities = 108/130 (83%) Strand = Plus / Plus Query: 21 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 80 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 1187 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 1246 Query: 81 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 140 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 1247 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 1306 Query: 141 ttctacggtt 150 |||||||||| Sbjct: 1307 ttctacggtt 1316
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 222 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 281 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 1336 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 1395 Query: 282 gcgacgacggcagctgcctttacaccttttaagca 316 ||||||||||||||||||||||||||||||||||| Sbjct: 1396 gcgacgacggcagctgcctttacaccttttaagca 1430 Score = 79.8 bits (40), Expect = 7e-12 Identities = 106/128 (82%) Strand = Plus / Plus Query: 21 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 80 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 1182 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 1241 Query: 81 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 140 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 1242 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 1301 Query: 141 ttctacgg 148 |||||||| Sbjct: 1302 ttctacgg 1309
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 222 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 281 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 28302395 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 28302336 Query: 282 gcgacgacggcagctgcctttacaccttttaagca 316 ||||||||||||||||||||||||||||||||||| Sbjct: 28302335 gcgacgacggcagctgcctttacaccttttaagca 28302301 Score = 89.7 bits (45), Expect = 7e-15 Identities = 111/133 (83%) Strand = Plus / Minus Query: 21 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 80 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 28303577 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 28303518 Query: 81 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 140 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 28303517 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 28303458 Query: 141 ttctacggttaga 153 ||||||||||||| Sbjct: 28303457 ttctacggttaga 28303445 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 224 cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 283 |||||||||| || |||||||||||| ||| ||||||||||| || || |||||| Sbjct: 28307266 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 28307207 Query: 284 gacgacggcagctgc 298 ||||||||||||||| Sbjct: 28307206 gacgacggcagctgc 28307192
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 222 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 281 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 28284844 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 28284785 Query: 282 gcgacgacggcagctgcctttacaccttttaagca 316 ||||||||||||||||||||||||||||||||||| Sbjct: 28284784 gcgacgacggcagctgcctttacaccttttaagca 28284750 Score = 89.7 bits (45), Expect = 7e-15 Identities = 111/133 (83%) Strand = Plus / Minus Query: 21 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 80 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 28286026 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 28285967 Query: 81 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 140 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 28285966 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 28285907 Query: 141 ttctacggttaga 153 ||||||||||||| Sbjct: 28285906 ttctacggttaga 28285894 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 224 cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 283 |||||||||| || |||||||||||| ||| ||||||||||| || || |||||| Sbjct: 28289715 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 28289656 Query: 284 gacgacggcagctgc 298 ||||||||||||||| Sbjct: 28289655 gacgacggcagctgc 28289641
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 222 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 281 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 1371 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 1430 Query: 282 gcgacgacggcagctgcctttacaccttttaagca 316 ||||||||||||||||||||||||||||||||||| Sbjct: 1431 gcgacgacggcagctgcctttacaccttttaagca 1465 Score = 79.8 bits (40), Expect = 7e-12 Identities = 106/128 (82%) Strand = Plus / Plus Query: 21 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 80 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 1217 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 1276 Query: 81 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 140 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 1277 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 1336 Query: 141 ttctacgg 148 |||||||| Sbjct: 1337 ttctacgg 1344
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 2e-24 Identities = 82/89 (92%) Strand = Plus / Plus Query: 222 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 281 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 5 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 64 Query: 282 gcgacgacggcagctgcctttacaccttt 310 ||||||||||||||||||||||||||||| Sbjct: 65 gcgacgacggcagctgcctttacaccttt 93
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 119 bits (60), Expect = 8e-24 Identities = 114/130 (87%), Gaps = 4/130 (3%) Strand = Plus / Plus Query: 190 aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 246 ||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||| Sbjct: 1434 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1493 Query: 247 ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 306 || ||||||||| | |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1494 ccctgttgccaagaatt-cgacccaacggcgaggagcgacgacggcagctgcctttacac 1552 Query: 307 cttttaagca 316 |||||||||| Sbjct: 1553 cttttaagca 1562 Score = 83.8 bits (42), Expect = 4e-13 Identities = 108/130 (83%) Strand = Plus / Plus Query: 21 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 80 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 1230 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 1289 Query: 81 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 140 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 1290 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 1349 Query: 141 ttctacggtt 150 |||||||||| Sbjct: 1350 ttctacggtt 1359
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 222 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 281 |||| |||||||||||||| |||||| ||||||||||| |||||||||||| |||| Sbjct: 41 tgcctgtgccggaaggttgacccgaccctgttgccaagaacttcgacccaacggcgagga 100 Query: 282 gcgacgacggcagctgcctttacaccttttaagca 316 |||||||||||||||||||||| | |||||||||| Sbjct: 101 gcgacgacggcagctgcctttaaaacttttaagca 135
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 89.7 bits (45), Expect = 7e-15 Identities = 117/141 (82%) Strand = Plus / Plus Query: 12 aagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcag 71 |||||||| |||||||| ||||||| || ||||||||||| || || ||| | |||||| Sbjct: 867 aagctgctggagtacggcaacatgctggtgcaggagcaggagaacgtgaagagggtgcag 926 Query: 72 cttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaag 131 || || |||| ||| ||||| |||||||||| ||||| || || ||||| ||||| ||| Sbjct: 927 ctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcgatcaag 986 Query: 132 actggttccttctacggttag 152 ||||| |||||||| |||||| Sbjct: 987 actggatccttctatggttag 1007 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 233 gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 292 |||||||| ||||||| ||||||| |||| |||||| ||||| ||||||||||| ||| Sbjct: 1076 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1135 Query: 293 agctgcctttacac 306 |||||||| ||||| Sbjct: 1136 agctgcctgtacac 1149
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 83.8 bits (42), Expect = 4e-13 Identities = 114/138 (82%) Strand = Plus / Plus Query: 7 tcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtg 66 |||||||||| | |||||||| |||||||| || ||||||||| || |||||||||| Sbjct: 782 tcgagaagctcttggagtacggacacatgctggtggcggagcaggagaacgtcaagcgtg 841 Query: 67 tgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcga 126 ||||||||||||||| ||| | | | |||| ||||| ||||| || ||| |||| || | Sbjct: 842 tgcagcttgctgacaagtacctcaacgaggctgctcttggtgaagccaacgaggacgcca 901 Query: 127 tgaagactggttccttct 144 |||||||||| ||||||| Sbjct: 902 tgaagactggctccttct 919
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 83.8 bits (42), Expect = 4e-13 Identities = 114/138 (82%) Strand = Plus / Plus Query: 7 tcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtg 66 |||||||||| | |||||||| |||||||| || ||||||||| || |||||||||| Sbjct: 1177 tcgagaagctcttggagtacggacacatgctggtggcggagcaggagaacgtcaagcgtg 1236 Query: 67 tgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcga 126 ||||||||||||||| ||| | | | |||| ||||| ||||| || ||| |||| || | Sbjct: 1237 tgcagcttgctgacaagtacctcaacgaggctgctcttggtgaagccaacgaggacgcca 1296 Query: 127 tgaagactggttccttct 144 |||||||||| ||||||| Sbjct: 1297 tgaagactggctccttct 1314
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 83.8 bits (42), Expect = 4e-13 Identities = 108/130 (83%) Strand = Plus / Plus Query: 21 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 80 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 436 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 495 Query: 81 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 140 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 496 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 555 Query: 141 ttctacggtt 150 |||||||||| Sbjct: 556 ttctacggtt 565
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Plus Query: 12 aagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcag 71 |||||||| |||||||| ||||||| || ||||||||||| || || ||| | |||||| Sbjct: 1061 aagctgctggagtacggcaacatgctggtgcaggagcaggagaacgtgaagagggtgcag 1120 Query: 72 cttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaag 131 || || |||| ||| ||||| |||||||||| ||||| || || ||||| ||||| ||| Sbjct: 1121 ctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcgatcaag 1180 Query: 132 actggttccttcta 145 ||||| |||||||| Sbjct: 1181 actggatccttcta 1194 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 233 gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 292 |||||||| ||||||| ||||||| |||| |||||| ||||| ||||||||||| ||| Sbjct: 1232 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1291 Query: 293 agctgcctttacac 306 |||||||| ||||| Sbjct: 1292 agctgcctgtacac 1305
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 83.8 bits (42), Expect = 4e-13 Identities = 114/138 (82%) Strand = Plus / Plus Query: 7 tcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtg 66 |||||||||| | |||||||| |||||||| || ||||||||| || |||||||||| Sbjct: 1177 tcgagaagctcttggagtacggacacatgctggtggcggagcaggagaacgtcaagcgtg 1236 Query: 67 tgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcga 126 ||||||||||||||| ||| | | | |||| ||||| ||||| || ||| |||| || | Sbjct: 1237 tgcagcttgctgacaagtacctcaacgaggctgctcttggtgaagccaacgaggacgcca 1296 Query: 127 tgaagactggttccttct 144 |||||||||| ||||||| Sbjct: 1297 tgaagactggctccttct 1314
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 7e-12 Identities = 97/116 (83%) Strand = Plus / Plus Query: 12 aagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcag 71 |||||||||||||| || ||||||| |||||||||||||||||||| ||| | || || Sbjct: 3 aagctgctagagtatggaaacatgcttgtccaggagcaggacaatgtgaagagagttcaa 62 Query: 72 cttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgat 127 || || ||||| ||| ||||||| |||||||| || ||||| ||| ||||| |||| Sbjct: 63 ctggcagacacgtacttgagccaagcagctcttggagatgcaaacgaggattcgat 118
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 222 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 281 |||| |||||||||||||||||||||| |||||| |||| ||||||||||| | || Sbjct: 4541319 tgcctgtgccggaaggttgcaccgaccctgttgccaacaactttgacccaacggcgatga 4541378 Query: 282 gcgacgacggcagctgcctttacaccttttaagca 316 || ||||| ||| ||||||||||||||| |||||| Sbjct: 4541379 gcaacgacagcatctgcctttacaccttctaagca 4541413
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 222 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 281 |||| |||||||||||||||||||||| |||||| |||| ||||||||||| | || Sbjct: 84693 tgcctgtgccggaaggttgcaccgaccctgttgccaacaactttgacccaacggcgatga 84752 Query: 282 gcgacgacggcagctgcctttacaccttttaagca 316 || ||||| ||| ||||||||||||||| |||||| Sbjct: 84753 gcaacgacagcatctgcctttacaccttctaagca 84787
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 73.8 bits (37), Expect = 4e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 21 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagct 73 |||||||| |||||||| |||||||||||||| || ||||||||||||||||| Sbjct: 1340 gagtacggccacatgctggtccaggagcaggagaacgtcaagcgtgtgcagct 1392
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 233 gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 292 |||||||| ||||||| ||||||| |||| |||||| ||||| ||||||||||| ||| Sbjct: 1377 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1436 Query: 293 agctgcctttacac 306 |||||||| ||||| Sbjct: 1437 agctgcctgtacac 1450
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 233 gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 292 |||||||| ||||||| ||||||| |||| |||||| ||||| ||||||||||| ||| Sbjct: 1202 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1261 Query: 293 agctgcctttacac 306 |||||||| ||||| Sbjct: 1262 agctgcctgtacac 1275
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 7 tcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtg 66 |||||||||| | |||||||| |||||||| |||||||||||||| || || ||||| | Sbjct: 1176 tcgagaagctcatggagtacggccacatgctggtccaggagcaggagaacgtgaagcgcg 1235 Query: 67 tgcagct 73 ||||||| Sbjct: 1236 tgcagct 1242
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 44.1 bits (22), Expect = 0.37 Identities = 43/50 (86%) Strand = Plus / Plus Query: 75 gctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgc 124 ||||||| |||||||| |||| || || |||||||||||||||||||| Sbjct: 1306 gctgacaagtacatgagtgaggctgcccttggtgatgctaaccaggatgc 1355
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 90 agccaggcagctctgggtgatg 111 |||||||||||||||||||||| Sbjct: 51254 agccaggcagctctgggtgatg 51275
>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence Length = 153155 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 390 ttaatatatctctaaatatatt 411 |||||||||||||||||||||| Sbjct: 67963 ttaatatatctctaaatatatt 67942
>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence Length = 177245 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 gttaatatatctctaaatata 409 ||||||||||||||||||||| Sbjct: 12335 gttaatatatctctaaatata 12315
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence Length = 98660 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 gttaatatatctctaaatata 409 ||||||||||||||||||||| Sbjct: 66367 gttaatatatctctaaatata 66387
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 cacttttaatatctgatgttt 340 ||||||||||||||||||||| Sbjct: 3040420 cacttttaatatctgatgttt 3040440
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence Length = 75381 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 acccaccatctcttgctgcat 189 ||||||||||||||||||||| Sbjct: 63550 acccaccatctcttgctgcat 63530
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 45 gagcaggacaatgtcaagcgtgtgcagct 73 |||||||| ||||||||||| |||||||| Sbjct: 2105 gagcaggagaatgtcaagcgcgtgcagct 2133
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 cacttttaatatctgatgttt 340 ||||||||||||||||||||| Sbjct: 3040365 cacttttaatatctgatgttt 3040385
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 cacttttaatatctgatgttt 340 ||||||||||||||||||||| Sbjct: 114423 cacttttaatatctgatgttt 114403
>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence Length = 105452 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 gttaatatatctctaaatata 409 ||||||||||||||||||||| Sbjct: 6197 gttaatatatctctaaatata 6217
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 tgcataggaggaggtaaagg 204 |||||||||||||||||||| Sbjct: 46378 tgcataggaggaggtaaagg 46359
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 tgagccaggcagctctgggtgatg 111 ||||||||||||||||||| |||| Sbjct: 1565 tgagccaggcagctctgggcgatg 1542
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18, and complete cds Length = 16432 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 tgcataggaggaggtaaagg 204 |||||||||||||||||||| Sbjct: 1656 tgcataggaggaggtaaagg 1637
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 40.1 bits (20), Expect = 5.7 Identities = 68/84 (80%) Strand = Plus / Plus Query: 32 catgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgag 91 |||||| |||||||||||||| || |||||| | || || | ||||||| |||||| Sbjct: 1263 catgcttgtccaggagcaggagaacgtcaagagagttcaattagctgacaaatacatgtc 1322 Query: 92 ccaggcagctctgggtgatgctaa 115 | |||| ||||| ||||||||||| Sbjct: 1323 cgaggctgctcttggtgatgctaa 1346
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 tgcataggaggaggtaaagg 204 |||||||||||||||||||| Sbjct: 32964 tgcataggaggaggtaaagg 32945
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 agcgtgtgcagcttgctgac 80 |||||||||||||||||||| Sbjct: 223 agcgtgtgcagcttgctgac 242
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 atgccacttttaatatctga 335 |||||||||||||||||||| Sbjct: 141077 atgccacttttaatatctga 141058
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 atgccacttttaatatctga 335 |||||||||||||||||||| Sbjct: 142583 atgccacttttaatatctga 142564
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 atgccacttttaatatctga 335 |||||||||||||||||||| Sbjct: 95911 atgccacttttaatatctga 95930
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 tgagccaggcagctctgggtgatg 111 ||||||||||||||||||| |||| Sbjct: 1619 tgagccaggcagctctgggcgatg 1596
>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166149 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 aatatatctctaaatatatt 411 |||||||||||||||||||| Sbjct: 30473 aatatatctctaaatatatt 30454
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 caggagcaggacaatgtcaa 61 |||||||||||||||||||| Sbjct: 126419 caggagcaggacaatgtcaa 126438
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 tgagccaggcagctctgggtgatg 111 ||||||||||||||||||| |||| Sbjct: 1935 tgagccaggcagctctgggcgatg 1912
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 280 gagcgacgacggcagctgcctttacacc 307 |||||||||||||||| |||| |||||| Sbjct: 5133 gagcgacgacggcagcagcctgtacacc 5160
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 Length = 504369 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 364 tccaagcgattgctgggcatgttt 387 ||||| |||||||||||||||||| Sbjct: 41715 tccaatcgattgctgggcatgttt 41692
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 tgcataggaggaggtaaagg 204 |||||||||||||||||||| Sbjct: 34681 tgcataggaggaggtaaagg 34662
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 tgagccaggcagctctgggtgatg 111 ||||||||||||||||||| |||| Sbjct: 1659 tgagccaggcagctctgggcgatg 1636
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 tgagccaggcagctctgggtgatg 111 ||||||||||||||||||| |||| Sbjct: 2026 tgagccaggcagctctgggcgatg 2003
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 tgagccaggcagctctgggtgatg 111 ||||||||||||||||||| |||| Sbjct: 1935 tgagccaggcagctctgggcgatg 1912
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 tacaccttttaagcatgcca 321 |||||||||||||||||||| Sbjct: 78254 tacaccttttaagcatgcca 78235
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 caggagcaggacaatgtcaa 61 |||||||||||||||||||| Sbjct: 106979 caggagcaggacaatgtcaa 106960
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 tgagccaggcagctctgggtgatg 111 ||||||||||||||||||| |||| Sbjct: 1619 tgagccaggcagctctgggcgatg 1596
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle) (predicted) (Lmod1_predicted), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 192 gaggaggtaaaggagcacagcaag 215 |||||||||||||||| ||||||| Sbjct: 625 gaggaggtaaaggagcccagcaag 648
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 tgcataggaggaggtaaagg 204 |||||||||||||||||||| Sbjct: 27736 tgcataggaggaggtaaagg 27755
>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18, complete sequence Length = 174701 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 aatatatctctaaatatatt 411 |||||||||||||||||||| Sbjct: 62485 aatatatctctaaatatatt 62504
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 agcatgccacttttaatatctgat 336 |||||| ||||||||||||||||| Sbjct: 127852 agcatggcacttttaatatctgat 127875 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,421,461 Number of Sequences: 3902068 Number of extensions: 3421461 Number of successful extensions: 68510 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 68241 Number of HSP's gapped (non-prelim): 220 length of query: 425 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 403 effective length of database: 17,147,199,772 effective search space: 6910321508116 effective search space used: 6910321508116 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
