>RARA_NOTVI (P18514) Retinoic acid receptor alpha (RAR-alpha)|
          Length = 458

 Score = 33.9 bits (76), Expect = 0.098
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +2

Query: 50  PPRSSSSEHPPGSCVPGATPFASPSDAGLH*P 145
           PPR+SS   PPGSC P  +P ++ S    H P
Sbjct: 427 PPRASSLAPPPGSCSPSLSPSSNRSSPTSHSP 458

>ALX4_HUMAN (Q9H161) Homeobox protein aristaless-like 4|
          Length = 411

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 41  EALPPRSSSSEHPPGSCVPGATPFASPSDAGLH 139
           + +P   S   HPPGS     T F S S AG H
Sbjct: 326 DPVPACMSPHAHPPGSGASSVTDFLSVSGAGSH 358

>RARA_CHICK (Q90966) Retinoic acid receptor alpha (RAR-alpha)|
          Length = 460

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 53  PRSSSSEHPPGSCVPGATPFASPSDAGLH*P 145
           PR+     PPGSC P  +P ++ S    H P
Sbjct: 430 PRTGGLGPPPGSCSPSLSPSSTRSSPATHSP 460

>SF3A2_HUMAN (Q15428) Splicing factor 3A subunit 2 (Spliceosome-associated|
           protein 62) (SAP 62) (SF3a66)
          Length = 464

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +2

Query: 11  PSRCGIHWRREALPPRSSSSEHPPGSCVPGATPFASPSDAGLH*PA 148
           P   G+H     + P  S+  HP    V  A P   P   G+H PA
Sbjct: 352 PPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPA 397

>NAP5_HUMAN (O14513) Nck-associated protein 5 (NAP-5) (Fragment)|
          Length = 416

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 50  PPRSSSSEHPPGSCVPGATPFASPSDAGLH*P 145
           PP  SS++  PGS V    PF SP   G+  P
Sbjct: 288 PPAPSSTKSKPGSPVNSKDPFKSPLLKGISAP 319

>ROBO3_MOUSE (Q9Z2I4) Roundabout homolog 3 precursor (Retinoblastoma-inhibiting|
            gene 1) (Rig-1)
          Length = 1366

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 50   PPRSSSSEHPPGSCVP 97
            PPRS S++ P GSC P
Sbjct: 969  PPRSPSAQEPRGSCCP 984

>SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-associated|
           protein 62) (SAP 62) (SF3a66)
          Length = 475

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +2

Query: 2   QHAPSRCGIHWRREALPPRSSSSEHPPGSCVPGATPFASPSDAGLH*PA 148
           Q  P   G+H     + P  +S  HPP   V    P   P  +G+H PA
Sbjct: 269 QMPPPAPGVHPPAPVVHP-PTSGVHPPAPGVHPPAPVVHPPTSGVHPPA 316

>MARK2_MOUSE (Q05512) Serine/threonine-protein kinase MARK2 (EC 2.7.11.1)|
           (MAP/microtubule affinity-regulating kinase 2) (ELKL
           Motif Kinase) (EMK1)
          Length = 776

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 35  RREALPPRSSSSEHPPGSCVPGATPFASPS 124
           +   LPP  S+ E P  S  P   P ASPS
Sbjct: 539 KASGLPPTESNCEVPRPSTAPQRVPVASPS 568

>GPC5_HUMAN (P78333) Glypican-5 precursor|
          Length = 572

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 138 WSPASLGLANGVAPGTQLPGGCSDEDERGGSAS 40
           W    LG   G+    Q+ G C DED  GGS S
Sbjct: 479 WELLQLGSGGGMVE--QVSGDCDDEDGCGGSGS 509

>ALX4_MOUSE (O35137) Homeobox protein aristaless-like 4 (ALX-4)|
          Length = 399

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 41  EALPPRSSSSEHPPGSCVPGATPFASPSDAGLH 139
           + +P   S   HPPGS     + F S S AG H
Sbjct: 314 DPVPACMSPHAHPPGSGASSVSDFLSVSGAGSH 346

>MARK2_HUMAN (Q7KZI7) Serine/threonine-protein kinase MARK2 (EC 2.7.11.1)|
           (MAP/microtubule affinity-regulating kinase 2) (ELKL
           motif kinase) (EMK1) (PAR1 homolog)
          Length = 788

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 35  RREALPPRSSSSEHPPGSCVPGATPFASPS 124
           +   LPP  S+ E P  S  P   P ASPS
Sbjct: 542 KASGLPPTESNCEVPRPSTAPQRVPVASPS 571

>P66B_HUMAN (Q8WXI9) Transcriptional repressor p66 beta (p66/p68) (GATA zinc|
           finger domain-containing protein 2B)
          Length = 593

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 134 VRHHWDSRTASRPGHSSLVDAQMRTSAEEA 45
           +R H D+RTA RPG  ++ D  +  SA  +
Sbjct: 83  LRPHGDNRTAGRPGKENINDEPVDMSARRS 112

>YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
           (ZAP113)
          Length = 1951

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 105 VAPGT---QLPGGCSDEDERGGSASRRQ*MPQREGA 7
           V PG+   ++PGG     +RG + SR +  P+R G+
Sbjct: 889 VRPGSSREKVPGGLQGSQDRGAAGSRERGPPRRAGS 924


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,828,625
Number of Sequences: 219361
Number of extensions: 575720
Number of successful extensions: 2320
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2310
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)