ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal18n20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial ... 46 0.083
2ref|XM_857622.1| PREDICTED: Canis familiaris similar to lipocali... 42 1.3
3ref|XM_857599.1| PREDICTED: Canis familiaris similar to lipocali... 42 1.3
4ref|XM_857570.1| PREDICTED: Canis familiaris similar to lipocali... 42 1.3
5ref|XM_857545.1| PREDICTED: Canis familiaris similar to lipocali... 42 1.3
6ref|XM_845798.1| PREDICTED: Canis familiaris similar to lipocali... 42 1.3
7gb|AC025726.2| Caenorhabditis elegans cosmid Y71G12B, complete s... 42 1.3
8gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence 40 5.1
9gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 40 5.1
10gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 5.1

>gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequence
          Length = 114045

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 197   gggaggccgagggccacgaggcg 219
             |||||||||||||||||||||||
Sbjct: 33650 gggaggccgagggccacgaggcg 33628



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>ref|XM_857622.1| PREDICTED: Canis familiaris similar to lipocalin-interacting
           membrane receptor, transcript variant 8 (LOC612809),
           mRNA
          Length = 1959

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 46  gcttcctccgcgctcgtcctc 66
           |||||||||||||||||||||
Sbjct: 203 gcttcctccgcgctcgtcctc 223



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>ref|XM_857599.1| PREDICTED: Canis familiaris similar to lipocalin-interacting
           membrane receptor, transcript variant 7 (LOC612809),
           mRNA
          Length = 1959

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 46  gcttcctccgcgctcgtcctc 66
           |||||||||||||||||||||
Sbjct: 203 gcttcctccgcgctcgtcctc 223



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>ref|XM_857570.1| PREDICTED: Canis familiaris similar to lipocalin-interacting
           membrane receptor, transcript variant 6 (LOC612809),
           mRNA
          Length = 2025

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 46  gcttcctccgcgctcgtcctc 66
           |||||||||||||||||||||
Sbjct: 203 gcttcctccgcgctcgtcctc 223



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>ref|XM_857545.1| PREDICTED: Canis familiaris similar to lipocalin-interacting
           membrane receptor, transcript variant 5 (LOC612809),
           mRNA
          Length = 1494

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 46  gcttcctccgcgctcgtcctc 66
           |||||||||||||||||||||
Sbjct: 203 gcttcctccgcgctcgtcctc 223



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>ref|XM_845798.1| PREDICTED: Canis familiaris similar to lipocalin-interacting
           membrane receptor, transcript variant 2 (LOC612809),
           mRNA
          Length = 2261

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 46  gcttcctccgcgctcgtcctc 66
           |||||||||||||||||||||
Sbjct: 203 gcttcctccgcgctcgtcctc 223



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>gb|AC025726.2| Caenorhabditis elegans cosmid Y71G12B, complete sequence
          Length = 191954

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 255   tcgcaggagttggcgagggta 275
             |||||||||||||||||||||
Sbjct: 86682 tcgcaggagttggcgagggta 86702



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>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 100     cgcgacgccgttcgcgagtc 119
               ||||||||||||||||||||
Sbjct: 1325373 cgcgacgccgttcgcgagtc 1325354



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>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 202    gccgagggccacgaggcgac 221
              ||||||||||||||||||||
Sbjct: 275394 gccgagggccacgaggcgac 275413



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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 199     gaggccgagggccacgaggc 218
               ||||||||||||||||||||
Sbjct: 3034885 gaggccgagggccacgaggc 3034866


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,389,255
Number of Sequences: 3902068
Number of extensions: 2389255
Number of successful extensions: 34516
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34444
Number of HSP's gapped (non-prelim): 72
length of query: 382
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 360
effective length of database: 17,147,199,772
effective search space: 6172991917920
effective search space used: 6172991917920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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