| Clone Name | baal19c11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0486C01, complete sequence Length = 146432 Score = 484 bits (244), Expect = e-133 Identities = 434/496 (87%), Gaps = 1/496 (0%) Strand = Plus / Minus Query: 3 ttcgacatcgcccgctggnatcccagccttcaacatggtcttccgcattctgattcccag 62 |||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| Sbjct: 43027 ttcgacatcgcccgctgg-atcccggccttcaacatggtgttccgtattctgattcccag 42969 Query: 63 cgagcgccgcctatgcgaccgcgtcttcgacggtctcgcccccttcggcgacctcgcctt 122 |||||||| ||||| ||||||||||||||||| ||||||||||| || ||||| ||||| Sbjct: 42968 tgagcgccggctatgtgaccgcgtcttcgacggcctcgccccctttggggaccttgcctt 42909 Query: 123 tatagctgctgtgcgcactcaggcactgcagctcatatcattcggcgacgccatttcttc 182 | | || || |||||||| || || |||||||||||||||||||||| || || ||||| Sbjct: 42908 tgtcgccgccgtgcgcacacaagccttgcagctcatatcattcggcgatgctatctcttc 42849 Query: 183 ctccagccgctcgcctgagcgcctcttccgagttgtggacatgtatgaggctgtgcggga 242 |||||||||| | || ||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 42848 ctccagccgcgctccggagcgcctcttccgagtggtggacatgtacgaggctgtgcggga 42789 Query: 243 catcctcccggaccttgaccctgtgttctccgacccttactctgctgcactccgtgcaga 302 | | ||||| |||||||| ||||||||| ||||||| ||||||||||| ||||||||||| Sbjct: 42788 ccttctccctgaccttgatcctgtgttcgccgacccgtactctgctgcgctccgtgcaga 42729 Query: 303 ggtctctgccgtgcgcaacaccctcggttcctcaatcaaaggtatattcatggaattgga 362 |||| | || ||| ||||||||||||| || || |||||||| ||||||||||| || || Sbjct: 42728 ggtcacggcggtgtgcaacaccctcggctcatcgatcaaaggcatattcatggagttaga 42669 Query: 363 aaatctcatccgccgagatcctgcccgggttgccacccctggtggtggtatacaccccat 422 ||||||||||||||| |||||||| || ||||| ||| ||||| || ||||| ||||| Sbjct: 42668 aaatctcatccgccgtgatcctgctcgagttgcagcccaaggtggaggcatacatcccat 42609 Query: 423 cactcggtacgtcatgaactatctccgagccgcatgcggttcacgacagacattggaaga 482 ||||||||| ||||||||||||||||| || || || || || || |||||||||||||| Sbjct: 42608 cactcggtatgtcatgaactatctccgtgctgcttgtgggtcgcggcagacattggaaga 42549 Query: 483 ggtgatggaaggtgac 498 |||||||||||||||| Sbjct: 42548 ggtgatggaaggtgac 42533
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 484 bits (244), Expect = e-133 Identities = 434/496 (87%), Gaps = 1/496 (0%) Strand = Plus / Minus Query: 3 ttcgacatcgcccgctggnatcccagccttcaacatggtcttccgcattctgattcccag 62 |||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| Sbjct: 23111252 ttcgacatcgcccgctgg-atcccggccttcaacatggtgttccgtattctgattcccag 23111194 Query: 63 cgagcgccgcctatgcgaccgcgtcttcgacggtctcgcccccttcggcgacctcgcctt 122 |||||||| ||||| ||||||||||||||||| ||||||||||| || ||||| ||||| Sbjct: 23111193 tgagcgccggctatgtgaccgcgtcttcgacggcctcgccccctttggggaccttgcctt 23111134 Query: 123 tatagctgctgtgcgcactcaggcactgcagctcatatcattcggcgacgccatttcttc 182 | | || || |||||||| || || |||||||||||||||||||||| || || ||||| Sbjct: 23111133 tgtcgccgccgtgcgcacacaagccttgcagctcatatcattcggcgatgctatctcttc 23111074 Query: 183 ctccagccgctcgcctgagcgcctcttccgagttgtggacatgtatgaggctgtgcggga 242 |||||||||| | || ||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 23111073 ctccagccgcgctccggagcgcctcttccgagtggtggacatgtacgaggctgtgcggga 23111014 Query: 243 catcctcccggaccttgaccctgtgttctccgacccttactctgctgcactccgtgcaga 302 | | ||||| |||||||| ||||||||| ||||||| ||||||||||| ||||||||||| Sbjct: 23111013 ccttctccctgaccttgatcctgtgttcgccgacccgtactctgctgcgctccgtgcaga 23110954 Query: 303 ggtctctgccgtgcgcaacaccctcggttcctcaatcaaaggtatattcatggaattgga 362 |||| | || ||| ||||||||||||| || || |||||||| ||||||||||| || || Sbjct: 23110953 ggtcacggcggtgtgcaacaccctcggctcatcgatcaaaggcatattcatggagttaga 23110894 Query: 363 aaatctcatccgccgagatcctgcccgggttgccacccctggtggtggtatacaccccat 422 ||||||||||||||| |||||||| || ||||| ||| ||||| || ||||| ||||| Sbjct: 23110893 aaatctcatccgccgtgatcctgctcgagttgcagcccaaggtggaggcatacatcccat 23110834 Query: 423 cactcggtacgtcatgaactatctccgagccgcatgcggttcacgacagacattggaaga 482 ||||||||| ||||||||||||||||| || || || || || || |||||||||||||| Sbjct: 23110833 cactcggtatgtcatgaactatctccgtgctgcttgtgggtcgcggcagacattggaaga 23110774 Query: 483 ggtgatggaaggtgac 498 |||||||||||||||| Sbjct: 23110773 ggtgatggaaggtgac 23110758
>dbj|AK101630.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033054N12, full insert sequence Length = 2314 Score = 484 bits (244), Expect = e-133 Identities = 434/496 (87%), Gaps = 1/496 (0%) Strand = Plus / Plus Query: 3 ttcgacatcgcccgctggnatcccagccttcaacatggtcttccgcattctgattcccag 62 |||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| Sbjct: 865 ttcgacatcgcccgctgg-atcccggccttcaacatggtgttccgtattctgattcccag 923 Query: 63 cgagcgccgcctatgcgaccgcgtcttcgacggtctcgcccccttcggcgacctcgcctt 122 |||||||| ||||| ||||||||||||||||| ||||||||||| || ||||| ||||| Sbjct: 924 tgagcgccggctatgtgaccgcgtcttcgacggcctcgccccctttggggaccttgcctt 983 Query: 123 tatagctgctgtgcgcactcaggcactgcagctcatatcattcggcgacgccatttcttc 182 | | || || |||||||| || || |||||||||||||||||||||| || || ||||| Sbjct: 984 tgtcgccgccgtgcgcacacaagccttgcagctcatatcattcggcgatgctatctcttc 1043 Query: 183 ctccagccgctcgcctgagcgcctcttccgagttgtggacatgtatgaggctgtgcggga 242 |||||||||| | || ||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 1044 ctccagccgcgctccggagcgcctcttccgagtggtggacatgtacgaggctgtgcggga 1103 Query: 243 catcctcccggaccttgaccctgtgttctccgacccttactctgctgcactccgtgcaga 302 | | ||||| |||||||| ||||||||| ||||||| ||||||||||| ||||||||||| Sbjct: 1104 ccttctccctgaccttgatcctgtgttcgccgacccgtactctgctgcgctccgtgcaga 1163 Query: 303 ggtctctgccgtgcgcaacaccctcggttcctcaatcaaaggtatattcatggaattgga 362 |||| | || ||| ||||||||||||| || || |||||||| ||||||||||| || || Sbjct: 1164 ggtcacggcggtgtgcaacaccctcggctcatcgatcaaaggcatattcatggagttaga 1223 Query: 363 aaatctcatccgccgagatcctgcccgggttgccacccctggtggtggtatacaccccat 422 ||||||||||||||| |||||||| || ||||| ||| ||||| || ||||| ||||| Sbjct: 1224 aaatctcatccgccgtgatcctgctcgagttgcagcccaaggtggaggcatacatcccat 1283 Query: 423 cactcggtacgtcatgaactatctccgagccgcatgcggttcacgacagacattggaaga 482 ||||||||| ||||||||||||||||| || || || || || || |||||||||||||| Sbjct: 1284 cactcggtatgtcatgaactatctccgtgctgcttgtgggtcgcggcagacattggaaga 1343 Query: 483 ggtgatggaaggtgac 498 |||||||||||||||| Sbjct: 1344 ggtgatggaaggtgac 1359
>dbj|AK059362.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-E02, full insert sequence Length = 1302 Score = 367 bits (185), Expect = 2e-98 Identities = 347/401 (86%) Strand = Plus / Plus Query: 98 tcgcccccttcggcgacctcgcctttatagctgctgtgcgcactcaggcactgcagctca 157 |||||||||| || ||||| |||||| | || || |||||||| || || ||||||||| Sbjct: 1 tcgccccctttggggaccttgcctttgtcgccgccgtgcgcacacaagccttgcagctca 60 Query: 158 tatcattcggcgacgccatttcttcctccagccgctcgcctgagcgcctcttccgagttg 217 ||||||||||||| || || ||||||||||||||| | || ||||||||||||||||| | Sbjct: 61 tatcattcggcgatgctatctcttcctccagccgcgctccggagcgcctcttccgagtgg 120 Query: 218 tggacatgtatgaggctgtgcgggacatcctcccggaccttgaccctgtgttctccgacc 277 |||||||||| ||||||||||||||| | ||||| |||||||| ||||||||| |||||| Sbjct: 121 tggacatgtacgaggctgtgcgggaccttctccctgaccttgatcctgtgttcgccgacc 180 Query: 278 cttactctgctgcactccgtgcagaggtctctgccgtgcgcaacaccctcggttcctcaa 337 | ||||||||||| ||||||||||||||| | || ||| ||||||||||||| || || | Sbjct: 181 cgtactctgctgcgctccgtgcagaggtcacggcggtgtgcaacaccctcggctcatcga 240 Query: 338 tcaaaggtatattcatggaattggaaaatctcatccgccgagatcctgcccgggttgcca 397 ||||||| ||||||||||| || ||||||||||||||||| |||||||| || ||||| Sbjct: 241 tcaaaggcatattcatggagttagaaaatctcatccgccgtgatcctgctcgagttgcag 300 Query: 398 cccctggtggtggtatacaccccatcactcggtacgtcatgaactatctccgagccgcat 457 ||| ||||| || ||||| |||||||||||||| ||||||||||||||||| || || | Sbjct: 301 cccaaggtggaggcatacatcccatcactcggtatgtcatgaactatctccgtgctgctt 360 Query: 458 gcggttcacgacagacattggaagaggtgatggaaggtgac 498 | || || || |||||||||||||||||||||||||||||| Sbjct: 361 gtgggtcgcggcagacattggaagaggtgatggaaggtgac 401
>ref|NM_190417.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1959 Score = 335 bits (169), Expect = 9e-89 Identities = 416/497 (83%), Gaps = 1/497 (0%) Strand = Plus / Plus Query: 2 gttcgacatcgcccgctggnatcccagccttcaacatggtcttccgcattctgattccca 61 ||||||||| ||||| ||| ||||| |||||||| ||||| |||||||| ||||| |||| Sbjct: 858 gttcgacattgcccgatgg-atcccggccttcaagatggtgttccgcatcctgatcccca 916 Query: 62 gcgagcgccgcctatgcgaccgcgtcttcgacggtctcgcccccttcggcgacctcgcct 121 ||||||||||||| |||||||| ||||| ||||| |||||||| | ||||||||||| | Sbjct: 917 gcgagcgccgcctctgcgaccgtgtctttgacggcctcgccccttatggcgacctcgctt 976 Query: 122 ttatagctgctgtgcgcactcaggcactgcagctcatatcattcggcgacgccatttctt 181 || | ||||| || || || |||| |||||||| || || ||||||||||| ||||| Sbjct: 977 ttgttgctgcagttcgtacccaggtgctgcagcttatctccttcggcgacgcagtttctg 1036 Query: 182 cctccagccgctcgcctgagcgcctcttccgagttgtggacatgtatgaggctgtgcggg 241 | | || || | || |||||||||||||| || | |||||||||||||| ||||| | Sbjct: 1037 ctgctagtcgtgctccagagcgcctcttccgtgtcattgacatgtatgaggccgtgcgag 1096 Query: 242 acatcctcccggaccttgaccctgtgttctccgacccttactctgctgcactccgtgcag 301 || |||| || ||||| |||||||| || | || || |||||||||||||| ||||| | Sbjct: 1097 acctccttcctgacctcgaccctgtctttgctgatccctactctgctgcacttcgtgccg 1156 Query: 302 aggtctctgccgtgcgcaacaccctcggttcctcaatcaaaggtatattcatggaattgg 361 |||||||||| || |||||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 1157 aggtctctgctgtttgcaacacccttggttcctctatcaaaggtatattcatggaattgg 1216 Query: 362 aaaatctcatccgccgagatcctgcccgggttgccacccctggtggtggtatacacccca 421 ||||||||||||| || ||||||||||| ||| | ||||||||||| |||||||| | Sbjct: 1217 aaaatctcatccgacgtgatcctgcccgtgtttctgttcctggtggtggcatacacccaa 1276 Query: 422 tcactcggtacgtcatgaactatctccgagccgcatgcggttcacgacagacattggaag 481 |||| ||||| || |||||||||||||| || || || || ||| |||||||| |||||| Sbjct: 1277 tcacccggtatgtgatgaactatctccgtgctgcgtgtggatcaagacagacactggaag 1336 Query: 482 aggtgatggaaggtgac 498 ||||||||||||||||| Sbjct: 1337 aggtgatggaaggtgac 1353
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 335 bits (169), Expect = 9e-89 Identities = 416/497 (83%), Gaps = 1/497 (0%) Strand = Plus / Plus Query: 2 gttcgacatcgcccgctggnatcccagccttcaacatggtcttccgcattctgattccca 61 ||||||||| ||||| ||| ||||| |||||||| ||||| |||||||| ||||| |||| Sbjct: 35403604 gttcgacattgcccgatgg-atcccggccttcaagatggtgttccgcatcctgatcccca 35403662 Query: 62 gcgagcgccgcctatgcgaccgcgtcttcgacggtctcgcccccttcggcgacctcgcct 121 ||||||||||||| |||||||| ||||| ||||| |||||||| | ||||||||||| | Sbjct: 35403663 gcgagcgccgcctctgcgaccgtgtctttgacggcctcgccccttatggcgacctcgctt 35403722 Query: 122 ttatagctgctgtgcgcactcaggcactgcagctcatatcattcggcgacgccatttctt 181 || | ||||| || || || |||| |||||||| || || ||||||||||| ||||| Sbjct: 35403723 ttgttgctgcagttcgtacccaggtgctgcagcttatctccttcggcgacgcagtttctg 35403782 Query: 182 cctccagccgctcgcctgagcgcctcttccgagttgtggacatgtatgaggctgtgcggg 241 | | || || | || |||||||||||||| || | |||||||||||||| ||||| | Sbjct: 35403783 ctgctagtcgtgctccagagcgcctcttccgtgtcattgacatgtatgaggccgtgcgag 35403842 Query: 242 acatcctcccggaccttgaccctgtgttctccgacccttactctgctgcactccgtgcag 301 || |||| || ||||| |||||||| || | || || |||||||||||||| ||||| | Sbjct: 35403843 acctccttcctgacctcgaccctgtctttgctgatccctactctgctgcacttcgtgccg 35403902 Query: 302 aggtctctgccgtgcgcaacaccctcggttcctcaatcaaaggtatattcatggaattgg 361 |||||||||| || |||||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 35403903 aggtctctgctgtttgcaacacccttggttcctctatcaaaggtatattcatggaattgg 35403962 Query: 362 aaaatctcatccgccgagatcctgcccgggttgccacccctggtggtggtatacacccca 421 ||||||||||||| || ||||||||||| ||| | ||||||||||| |||||||| | Sbjct: 35403963 aaaatctcatccgacgtgatcctgcccgtgtttctgttcctggtggtggcatacacccaa 35404022 Query: 422 tcactcggtacgtcatgaactatctccgagccgcatgcggttcacgacagacattggaag 481 |||| ||||| || |||||||||||||| || || || || ||| |||||||| |||||| Sbjct: 35404023 tcacccggtatgtgatgaactatctccgtgctgcgtgtggatcaagacagacactggaag 35404082 Query: 482 aggtgatggaaggtgac 498 ||||||||||||||||| Sbjct: 35404083 aggtgatggaaggtgac 35404099
>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088C09 Length = 154084 Score = 335 bits (169), Expect = 9e-89 Identities = 416/497 (83%), Gaps = 1/497 (0%) Strand = Plus / Plus Query: 2 gttcgacatcgcccgctggnatcccagccttcaacatggtcttccgcattctgattccca 61 ||||||||| ||||| ||| ||||| |||||||| ||||| |||||||| ||||| |||| Sbjct: 27553 gttcgacattgcccgatgg-atcccggccttcaagatggtgttccgcatcctgatcccca 27611 Query: 62 gcgagcgccgcctatgcgaccgcgtcttcgacggtctcgcccccttcggcgacctcgcct 121 ||||||||||||| |||||||| ||||| ||||| |||||||| | ||||||||||| | Sbjct: 27612 gcgagcgccgcctctgcgaccgtgtctttgacggcctcgccccttatggcgacctcgctt 27671 Query: 122 ttatagctgctgtgcgcactcaggcactgcagctcatatcattcggcgacgccatttctt 181 || | ||||| || || || |||| |||||||| || || ||||||||||| ||||| Sbjct: 27672 ttgttgctgcagttcgtacccaggtgctgcagcttatctccttcggcgacgcagtttctg 27731 Query: 182 cctccagccgctcgcctgagcgcctcttccgagttgtggacatgtatgaggctgtgcggg 241 | | || || | || |||||||||||||| || | |||||||||||||| ||||| | Sbjct: 27732 ctgctagtcgtgctccagagcgcctcttccgtgtcattgacatgtatgaggccgtgcgag 27791 Query: 242 acatcctcccggaccttgaccctgtgttctccgacccttactctgctgcactccgtgcag 301 || |||| || ||||| |||||||| || | || || |||||||||||||| ||||| | Sbjct: 27792 acctccttcctgacctcgaccctgtctttgctgatccctactctgctgcacttcgtgccg 27851 Query: 302 aggtctctgccgtgcgcaacaccctcggttcctcaatcaaaggtatattcatggaattgg 361 |||||||||| || |||||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 27852 aggtctctgctgtttgcaacacccttggttcctctatcaaaggtatattcatggaattgg 27911 Query: 362 aaaatctcatccgccgagatcctgcccgggttgccacccctggtggtggtatacacccca 421 ||||||||||||| || ||||||||||| ||| | ||||||||||| |||||||| | Sbjct: 27912 aaaatctcatccgacgtgatcctgcccgtgtttctgttcctggtggtggcatacacccaa 27971 Query: 422 tcactcggtacgtcatgaactatctccgagccgcatgcggttcacgacagacattggaag 481 |||| ||||| || |||||||||||||| || || || || ||| |||||||| |||||| Sbjct: 27972 tcacccggtatgtgatgaactatctccgtgctgcgtgtggatcaagacagacactggaag 28031 Query: 482 aggtgatggaaggtgac 498 ||||||||||||||||| Sbjct: 28032 aggtgatggaaggtgac 28048
>dbj|AK111814.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013133L14, full insert sequence Length = 2390 Score = 335 bits (169), Expect = 9e-89 Identities = 416/497 (83%), Gaps = 1/497 (0%) Strand = Plus / Plus Query: 2 gttcgacatcgcccgctggnatcccagccttcaacatggtcttccgcattctgattccca 61 ||||||||| ||||| ||| ||||| |||||||| ||||| |||||||| ||||| |||| Sbjct: 1056 gttcgacattgcccgatgg-atcccggccttcaagatggtgttccgcatcctgatcccca 1114 Query: 62 gcgagcgccgcctatgcgaccgcgtcttcgacggtctcgcccccttcggcgacctcgcct 121 ||||||||||||| |||||||| ||||| ||||| |||||||| | ||||||||||| | Sbjct: 1115 gcgagcgccgcctctgcgaccgtgtctttgacggcctcgccccttatggcgacctcgctt 1174 Query: 122 ttatagctgctgtgcgcactcaggcactgcagctcatatcattcggcgacgccatttctt 181 || | ||||| || || || |||| |||||||| || || ||||||||||| ||||| Sbjct: 1175 ttgttgctgcagttcgtacccaggtgctgcagcttatctccttcggcgacgcagtttctg 1234 Query: 182 cctccagccgctcgcctgagcgcctcttccgagttgtggacatgtatgaggctgtgcggg 241 | | || || | || |||||||||||||| || | |||||||||||||| ||||| | Sbjct: 1235 ctgctagtcgtgctccagagcgcctcttccgtgtcattgacatgtatgaggccgtgcgag 1294 Query: 242 acatcctcccggaccttgaccctgtgttctccgacccttactctgctgcactccgtgcag 301 || |||| || ||||| |||||||| || | || || |||||||||||||| ||||| | Sbjct: 1295 acctccttcctgacctcgaccctgtctttgctgatccctactctgctgcacttcgtgccg 1354 Query: 302 aggtctctgccgtgcgcaacaccctcggttcctcaatcaaaggtatattcatggaattgg 361 |||||||||| || |||||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 1355 aggtctctgctgtttgcaacacccttggttcctctatcaaaggtatattcatggaattgg 1414 Query: 362 aaaatctcatccgccgagatcctgcccgggttgccacccctggtggtggtatacacccca 421 ||||||||||||| || ||||||||||| ||| | ||||||||||| |||||||| | Sbjct: 1415 aaaatctcatccgacgtgatcctgcccgtgtttctgttcctggtggtggcatacacccaa 1474 Query: 422 tcactcggtacgtcatgaactatctccgagccgcatgcggttcacgacagacattggaag 481 |||| ||||| || |||||||||||||| || || || || ||| |||||||| |||||| Sbjct: 1475 tcacccggtatgtgatgaactatctccgtgctgcgtgtggatcaagacagacactggaag 1534 Query: 482 aggtgatggaaggtgac 498 ||||||||||||||||| Sbjct: 1535 aggtgatggaaggtgac 1551
>gb|BT018513.1| Zea mays clone EL01N0430C01.d mRNA sequence Length = 1245 Score = 216 bits (109), Expect = 6e-53 Identities = 268/321 (83%) Strand = Plus / Plus Query: 178 tcttcctccagccgctcgcctgagcgcctcttccgagttgtggacatgtatgaggctgtg 237 |||||||| |||||| |||| |||||||| ||||| || || |||||||| ||||||||| Sbjct: 15 tcttcctcaagccgcgcgccggagcgccttttccgcgtcgttgacatgtacgaggctgtg 74 Query: 238 cgggacatcctcccggaccttgaccctgtgttctccgacccttactctgctgcactccgt 297 || ||||||||||| |||||||| ||||||||||| ||||| ||||| |||||||||||| Sbjct: 75 cgtgacatcctccctgaccttgatcctgtgttctctgacccatactccgctgcactccgt 134 Query: 298 gcagaggtctctgccgtgcgcaacaccctcggttcctcaatcaaaggtatattcatggaa 357 || |||||||| | || ||||||| || || | ||||| |||||||| |||||| Sbjct: 135 gcggaggtctcctcgatgtgcaacacactggggtggggtatcaagggtatatttatggaa 194 Query: 358 ttggaaaatctcatccgccgagatcctgcccgggttgccacccctggtggtggtatacac 417 |||||||||||||||||||| || |||||||| |||| ||| || || | ||||| Sbjct: 195 ttggaaaatctcatccgccgtgaccctgcccgaattgctgcccaagggggcgtcatacat 254 Query: 418 cccatcactcggtacgtcatgaactatctccgagccgcatgcggttcacgacagacattg 477 || ||||||||| | || ||||||||||||||||| || || || || || ||||||||| Sbjct: 255 cctatcactcgggatgttatgaactatctccgagctgcgtgtggatcgcggcagacattg 314 Query: 478 gaagaggtgatggaaggtgac 498 ||||||||||||||||||||| Sbjct: 315 gaagaggtgatggaaggtgac 335
>ref|XM_959480.1| Neurospora crassa OR74A hypothetical protein (NCU03167.1) partial mRNA Length = 402 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 130 gctgtgcgcactcaggcactgc 151 |||||||||||||||||||||| Sbjct: 221 gctgtgcgcactcaggcactgc 242
>ref|XM_330602.1| Neurospora crassa OR74A hypothetical protein (NCU03167.1) partial mRNA Length = 402 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 130 gctgtgcgcactcaggcactgc 151 |||||||||||||||||||||| Sbjct: 221 gctgtgcgcactcaggcactgc 242
>gb|AC165082.2| Mus musculus BAC clone RP23-412H17 from chromosome 17, complete sequence Length = 196132 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 504 tgctggtggtagagctgctgct 525 |||||||||||||||||||||| Sbjct: 148043 tgctggtggtagagctgctgct 148064 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 501 tagtgctggtggtagagctgctgct 525 ||||| ||||||||||||||||||| Sbjct: 148367 tagtggtggtggtagagctgctgct 148391 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 501 tagtgctggtggtagagctgctgct 525 ||||| ||||||||||||||||||| Sbjct: 148295 tagtggtggtggtagagctgctgct 148319 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 501 tagtgctggtggtagagctgctgct 525 ||||| ||||||||||||||||||| Sbjct: 148247 tagtggtggtggtagagctgctgct 148271 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 501 tagtgctggtggtagagctgctgct 525 ||||| ||||||||||||||||||| Sbjct: 148202 tagtggtggtggtagagctgctgct 148226 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 501 tagtgctggtggtagagctgctgct 525 ||||| ||||||||||||||||||| Sbjct: 148085 tagtggtggtggtagagctgctgct 148109
>emb|BX842636.1| Neurospora crassa DNA linkage group I cosmid contig 7C14 Length = 68050 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 130 gctgtgcgcactcaggcactgc 151 |||||||||||||||||||||| Sbjct: 62386 gctgtgcgcactcaggcactgc 62365
>gb|AC102334.10| Mus musculus chromosome 15, clone RP24-544N15, complete sequence Length = 162721 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 221 acatgtatgaggctgtgcgggacat 245 ||||||||||| ||||||||||||| Sbjct: 45495 acatgtatgagcctgtgcgggacat 45519
>gb|AY049011.1| Mus musculus melanin-concentrating hormone receptor 1 gene, complete cds, alternatively spliced Length = 5027 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 221 acatgtatgaggctgtgcgggacat 245 ||||||||||| ||||||||||||| Sbjct: 163 acatgtatgagcctgtgcgggacat 187
>gb|AY293839.1| Canavalia bonariensis small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence Length = 633 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 ggaccttgaccctgtgttctc 272 ||||||||||||||||||||| Sbjct: 588 ggaccttgaccctgtgttctc 608
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 gaccgcgtcttcgacggtctcgcc 102 ||||||||||||| |||||||||| Sbjct: 1859978 gaccgcgtcttcgccggtctcgcc 1859955
>gb|BC104459.1| Homo sapiens testis/prostate/placenta-expressed protein, isoform 2, transcript variant 2, mRNA (cDNA clone MGC:129931 IMAGE:40030657), complete cds Length = 865 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 ggtggtagagctgctgcttc 527 |||||||||||||||||||| Sbjct: 323 ggtggtagagctgctgcttc 304
>gb|BC104458.1| Homo sapiens testis/prostate/placenta-expressed protein, isoform 2, transcript variant 2, mRNA (cDNA clone MGC:129930 IMAGE:40030655), complete cds Length = 865 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 ggtggtagagctgctgcttc 527 |||||||||||||||||||| Sbjct: 323 ggtggtagagctgctgcttc 304
>gb|AC183432.1| Ornithorhynchus anatinus BAC clone OABb-35B8 from chromosome unknown, complete sequence Length = 142253 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ttggaagaggtgatggaagg 494 |||||||||||||||||||| Sbjct: 114906 ttggaagaggtgatggaagg 114887
>ref|NM_199456.1| Homo sapiens testis/prostate/placenta-expressed protein, isoform 2 (TEPP), transcript variant 2, mRNA Length = 875 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 ggtggtagagctgctgcttc 527 |||||||||||||||||||| Sbjct: 332 ggtggtagagctgctgcttc 313
>ref|NM_199046.1| Homo sapiens testis/prostate/placenta-expressed protein, isoform 2 (TEPP), transcript variant 1, mRNA Length = 956 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 ggtggtagagctgctgcttc 527 |||||||||||||||||||| Sbjct: 332 ggtggtagagctgctgcttc 313
>gb|AY216323.1| Inula britannica tRNA-Ala (trnA) gene, partial sequence; chloroplast Length = 619 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 ttctccgacccttactctgc 287 |||||||||||||||||||| Sbjct: 131 ttctccgacccttactctgc 112
>gb|AY363223.1| Homo sapiens testis/prostate/placenta-expressed protein splice variant mRNA, complete cds, alternatively spliced Length = 956 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 ggtggtagagctgctgcttc 527 |||||||||||||||||||| Sbjct: 332 ggtggtagagctgctgcttc 313
>gb|AY363222.1| Homo sapiens testis/prostate/placenta-expressed protein mRNA, complete cds, alternatively spliced Length = 875 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 ggtggtagagctgctgcttc 527 |||||||||||||||||||| Sbjct: 332 ggtggtagagctgctgcttc 313
>gb|AC149585.7| Mus musculus BAC clone RP24-316M20 from chromosome y, complete sequence Length = 172093 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 tcatggaattggaaaatctcatcc 373 |||||||||| ||||||||||||| Sbjct: 20389 tcatggaattagaaaatctcatcc 20412
>emb|AL360236.26| Human DNA sequence from clone RP11-380M3 on chromosome 6 Contains a novel pseudogene, part of the KCNQ5 gene for potassium voltage-gated channel KQT-like subfamily member 5, and a phosphoglycerate mutase 1 (brain) (PGAM1) pseudogene, complete sequence Length = 154998 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 atgtatgaggctgtgcggga 242 |||||||||||||||||||| Sbjct: 89470 atgtatgaggctgtgcggga 89451
>emb|X71659.1|RSBLNBAA R.sphaeroides genes glnA and glnB Length = 2460 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 gaccgcgtcttcgacggtctcgcc 102 ||||||||||||| |||||||||| Sbjct: 904 gaccgcgtcttcgccggtctcgcc 881
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 gcgaccgcgtcttcgacggtctcg 100 ||||||||||| |||||||||||| Sbjct: 1528725 gcgaccgcgtcgtcgacggtctcg 1528748
>gb|AC012182.7| Homo sapiens chromosome 16 clone RP11-332G1, complete sequence Length = 188926 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 ggtggtagagctgctgcttc 527 |||||||||||||||||||| Sbjct: 53155 ggtggtagagctgctgcttc 53136
>gb|AE012054.1| Xanthomonas axonopodis pv. citri str. 306, section 432 of 469 of the complete genome Length = 14572 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 ttgccacccctggtggtggt 411 |||||||||||||||||||| Sbjct: 13529 ttgccacccctggtggtggt 13548
>gb|AC163691.4| Mus musculus BAC clone RP24-1D8 from chromosome y, complete sequence Length = 165543 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 tcatggaattggaaaatctcatcc 373 |||||||||| ||||||||||||| Sbjct: 105885 tcatggaattagaaaatctcatcc 105908
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ggttcgacatcgcccgctgg 20 |||||||||||||||||||| Sbjct: 517132 ggttcgacatcgcccgctgg 517151
>gb|AC010543.9| Homo sapiens chromosome 16 clone RP11-440K14, complete sequence Length = 180286 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 ggtggtagagctgctgcttc 527 |||||||||||||||||||| Sbjct: 140814 ggtggtagagctgctgcttc 140795
>tpg|BK001513.1| TPA: TPA_exp: Sus scrofa Tepp (Tepp) mRNA, complete cds Length = 770 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 ggtggtagagctgctgcttc 527 |||||||||||||||||||| Sbjct: 198 ggtggtagagctgctgcttc 179
>gb|AC160967.4| Mus musculus BAC clone RP24-385N6 from chromosome y, complete sequence Length = 150231 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 tcatggaattggaaaatctcatcc 373 |||||||||| ||||||||||||| Sbjct: 90470 tcatggaattagaaaatctcatcc 90493
>gb|AF032116.1|AF032116 Rhodobacter sphaeroides PII protein (glnB) gene, complete cds Length = 907 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 gaccgcgtcttcgacggtctcgcc 102 ||||||||||||| |||||||||| Sbjct: 904 gaccgcgtcttcgccggtctcgcc 881
>gb|AC124527.5| Mus musculus BAC clone RP23-411B11 from 1, complete sequence Length = 189288 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 tcccagccttcaacatggtcttcc 46 ||||||||||||||||||| |||| Sbjct: 122743 tcccagccttcaacatggtgttcc 122720 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,413,846 Number of Sequences: 3902068 Number of extensions: 3413846 Number of successful extensions: 67973 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67680 Number of HSP's gapped (non-prelim): 286 length of query: 536 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 513 effective length of database: 17,143,297,704 effective search space: 8794511722152 effective search space used: 8794511722152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)