ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal18n04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y046_CLOPE (Q8XPB9) UPF0133 protein CPE0046 36 0.031
2Y4556_STRAW (Q82EQ8) UPF0133 protein SAV4556 29 2.9
3Y3619_STRCO (Q9XAI3) UPF0133 protein SCO3619 29 3.8
4Y808_CHLPN (Q9Z798) Protein CPn_0808/CP1063/CPj0808/CpB0837 29 3.8
5Y3498_GLOVI (Q7NFM6) UPF0133 protein glr3498 29 3.8

>Y046_CLOPE (Q8XPB9) UPF0133 protein CPE0046|
          Length = 112

 Score = 35.8 bits (81), Expect = 0.031
 Identities = 21/48 (43%), Positives = 31/48 (64%)
 Frame = +1

Query: 67  AKGGIFGNIGNMQNLYETVKKAQMVVQVEAVRVQKELAATEIEGYCEG 210
           A+GG  G +GNM NL   +K+AQM +Q +   +Q+E+ A+E EG   G
Sbjct: 2   ARGGFPGGMGNMNNL---MKQAQM-LQKQMQSMQEEIEASEFEGSAGG 45



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>Y4556_STRAW (Q82EQ8) UPF0133 protein SAV4556|
          Length = 113

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 94  GNMQNLYETVKKAQMVVQVEAVRVQKELAATEIEGYCEGEL 216
           G   N+ + +++AQ + Q +    Q+ELA TE+EG   G L
Sbjct: 5   GGQPNMQQLLQQAQKMQQ-DLANAQEELARTEVEGQAGGGL 44



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>Y3619_STRCO (Q9XAI3) UPF0133 protein SCO3619|
          Length = 115

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 94  GNMQNLYETVKKAQMVVQVEAVRVQKELAATEIEGYCEGEL 216
           G   N+ + +++AQ + Q +  + Q+ELA TE++G   G L
Sbjct: 5   GGQPNMQQLLQQAQKMQQ-DLAKAQEELARTEVDGQAGGGL 44



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>Y808_CHLPN (Q9Z798) Protein CPn_0808/CP1063/CPj0808/CpB0837|
          Length = 444

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 67  AKGGIFGNIGNMQNLYETVKKAQMVVQVEAVRV 165
           A GG+FG + N  N  E V +   VV+ +  RV
Sbjct: 310 ASGGLFGEVLNKPNWSEKVSRGMNVVKTQGARV 342



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>Y3498_GLOVI (Q7NFM6) UPF0133 protein glr3498|
          Length = 111

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 82  FGNIGNMQNLYETVKKAQMVVQVEAVRVQKELAATEIEGYCEGEL 216
           FG +G  Q   + VK+    +Q  + ++Q ELAA  IEG   G L
Sbjct: 5   FGPMGQFQEALKRVKQ----IQEGSAKLQDELAALSIEGVAGGGL 45


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.134    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,707,876
Number of Sequences: 219361
Number of extensions: 316595
Number of successful extensions: 1431
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 80,573,946
effective HSP length: 47
effective length of database: 70,263,979
effective search space used: 1686335496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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