ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal18n02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009293.1| Triticum aestivum clone wlm0.pk039.d17:fis, full ... 264 2e-67
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
3dbj|AP003545.2| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
4dbj|AK063588.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
5gb|AY111038.1| Zea mays CL826_-1 mRNA sequence 109 8e-21
6gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome 52 0.002
7gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 48 0.026
8gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 46 0.10
9dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 46 0.10
10gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete g... 44 0.40
11ref|XM_950999.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.6
12ref|XM_330887.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.6
13emb|BX284753.1|NCB2G14 Neurospora crassa DNA linkage group II BA... 42 1.6
14gb|DQ200260.1| Taphozous mauritianus mast cell growth factor gen... 40 6.3
15gb|AC127256.4| Mus musculus BAC clone RP24-296G17 from chromosom... 40 6.3
16gb|AC145021.14| Medicago truncatula clone mth2-23a16, complete s... 40 6.3
17gb|AF398900.1| Phomopsis longicolla isolate NEB94 translation el... 40 6.3
18gb|AF398899.1| Phomopsis longicolla isolate AK76 translation elo... 40 6.3
19gb|AF398898.1| Phomopsis longicolla isolate 95-VS-24 translation... 40 6.3
20gb|AF398897.1| Phomopsis longicolla isolate 628 translation elon... 40 6.3
21gb|AF398896.1| Phomopsis longicolla isolate 600 translation elon... 40 6.3
22gb|AF398894.1| Diaporthe phaseolorum isolate SW93-5 translation ... 40 6.3
23emb|BX842631.1| Neurospora crassa DNA linkage group I BAC contig... 40 6.3
24gb|AC078985.14| Homo sapiens 3q BAC RP11-82C9 (Roswell Park Canc... 40 6.3
25dbj|AK079818.1| Mus musculus 0 day neonate thymus cDNA, RIKEN fu... 40 6.3
26ref|NM_001002094.1| Danio rerio zgc:86909 (zgc:86909), mRNA 40 6.3
27gb|BC071530.1| Danio rerio zgc:86909, mRNA (cDNA clone MGC:86909... 40 6.3
28dbj|AP000610.5| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 6.3
29gb|AC149054.3| Mus musculus BAC clone RP23-443H21 from 18, compl... 40 6.3 
>gb|BT009293.1| Triticum aestivum clone wlm0.pk039.d17:fis, full insert mRNA
           sequence
          Length = 870

 Score =  264 bits (133), Expect = 2e-67
 Identities = 156/164 (95%)
 Strand = Plus / Plus

                                                                       
Query: 302 gtcatctaccaagtttgatagtggtactggatggccgtcctattatcagccggttggcga 361
           |||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct: 343 gtcatcaaccaagtttgatagtggcactggatggccgtcctattaccagccggttagcga 402

                                                                       
Query: 362 caatgtgaaaagcaagcttgatatgtcaatcttcttcatgcctcggaccgagtccctgtg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 caatgtgaaaagcaagcttgatatgtcaatcttcttcatgcctcggaccgagtccctgtg 462

                                                       
Query: 422 cgctgtctgcgacgctcatctcgggcatgttttcgacgacnggc 465
           ||| |||||||||||||| || |||||||||||||||||| |||
Sbjct: 463 cgccgtctgcgacgctcacctggggcatgttttcgacgacgggc 506



 Score =  258 bits (130), Expect = 1e-65
 Identities = 146/150 (97%), Gaps = 1/150 (0%)
 Strand = Plus / Plus

                                                                       
Query: 11  tgatgaggagttgaagaagcgcctcacaaaagtaacagtattatgtcactcggcagaagg 70
           |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 196 tgatgaggagttgaagaagcgcctcacaaaag-aacagtattacgtcactcggcagaagg 254

                                                                       
Query: 71  gaactgagagggcattcacaggggaatactggaacactaaaaccccaggcgtctaccact 130
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 255 gaactgagagggcattcacaggggaatactggaacactaaaaccccaggcatctaccatt 314

                                         
Query: 131 gcatctgctgtgacacccctctgtttgagt 160
           ||||||||||||||||||||||||||||||
Sbjct: 315 gcatctgctgtgacacccctctgtttgagt 344
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  125 bits (63), Expect = 1e-25
 Identities = 129/151 (85%)
 Strand = Plus / Minus

                                                                            
Query: 298      ttaggtcatctaccaagtttgatagtggtactggatggccgtcctattatcagccggttg 357
                |||||||||| ||||| ||||||||||||||||| |||||||| |||||||| ||  |||
Sbjct: 15501557 ttaggtcatcgaccaaatttgatagtggtactgggtggccgtcatattatcaacccattg 15501498

                                                                            
Query: 358      gcgacaatgtgaaaagcaagcttgatatgtcaatcttcttcatgcctcggaccgagtccc 417
                | || ||||| ||  |||||||||||||||| ||| | |||||||||||||| |||   |
Sbjct: 15501497 gagataatgtaaagtgcaagcttgatatgtccatcatattcatgcctcggactgaggtgc 15501438

                                               
Query: 418      tgtgcgctgtctgcgacgctcatctcgggca 448
                |||| |||||||| ||||||||||| |||||
Sbjct: 15501437 tgtgtgctgtctgtgacgctcatctggggca 15501407



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 69/76 (90%)
 Strand = Plus / Minus

                                                                            
Query: 92       gggaatactggaacactaaaaccccaggcgtctaccactgcatctgctgtgacacccctc 151
                |||||||||||||||| |||||||| ||| ||||||| ||  ||||||||||||||||||
Sbjct: 15501761 gggaatactggaacaccaaaaccccgggcatctaccattgtgtctgctgtgacacccctc 15501702

                                
Query: 152      tgtttgagtaagcact 167
                | ||||||||||||||
Sbjct: 15501701 tttttgagtaagcact 15501686



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 54/62 (87%), Gaps = 1/62 (1%)
 Strand = Plus / Minus

                                                                            
Query: 10       ctgatgaggagttgaagaagcgcctcacaaaagtaacagtattatgtcactcggcagaag 69
                |||||||||||| || ||||||||| ||||||| | ||||||||  | ||||||||||||
Sbjct: 15501929 ctgatgaggagtggaggaagcgcctgacaaaag-atcagtattacattactcggcagaag 15501871

                  
Query: 70       gg 71
                ||
Sbjct: 15501870 gg 15501869
to top
>dbj|AP003545.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0613F06
          Length = 184289

 Score =  125 bits (63), Expect = 1e-25
 Identities = 129/151 (85%)
 Strand = Plus / Minus

                                                                          
Query: 298    ttaggtcatctaccaagtttgatagtggtactggatggccgtcctattatcagccggttg 357
              |||||||||| ||||| ||||||||||||||||| |||||||| |||||||| ||  |||
Sbjct: 169072 ttaggtcatcgaccaaatttgatagtggtactgggtggccgtcatattatcaacccattg 169013

                                                                          
Query: 358    gcgacaatgtgaaaagcaagcttgatatgtcaatcttcttcatgcctcggaccgagtccc 417
              | || ||||| ||  |||||||||||||||| ||| | |||||||||||||| |||   |
Sbjct: 169012 gagataatgtaaagtgcaagcttgatatgtccatcatattcatgcctcggactgaggtgc 168953

                                             
Query: 418    tgtgcgctgtctgcgacgctcatctcgggca 448
              |||| |||||||| ||||||||||| |||||
Sbjct: 168952 tgtgtgctgtctgtgacgctcatctggggca 168922



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 69/76 (90%)
 Strand = Plus / Minus

                                                                          
Query: 92     gggaatactggaacactaaaaccccaggcgtctaccactgcatctgctgtgacacccctc 151
              |||||||||||||||| |||||||| ||| ||||||| ||  ||||||||||||||||||
Sbjct: 169276 gggaatactggaacaccaaaaccccgggcatctaccattgtgtctgctgtgacacccctc 169217

                              
Query: 152    tgtttgagtaagcact 167
              | ||||||||||||||
Sbjct: 169216 tttttgagtaagcact 169201



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 54/62 (87%), Gaps = 1/62 (1%)
 Strand = Plus / Minus

                                                                          
Query: 10     ctgatgaggagttgaagaagcgcctcacaaaagtaacagtattatgtcactcggcagaag 69
              |||||||||||| || ||||||||| ||||||| | ||||||||  | ||||||||||||
Sbjct: 169444 ctgatgaggagtggaggaagcgcctgacaaaag-atcagtattacattactcggcagaag 169386

                
Query: 70     gg 71
              ||
Sbjct: 169385 gg 169384
to top
>dbj|AK063588.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-A09, full
           insert sequence
          Length = 856

 Score =  125 bits (63), Expect = 1e-25
 Identities = 130/151 (86%), Gaps = 1/151 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  ctgatgaggagttgaagaagcgcctcacaaaagtaacagtattatgtcactcggcagaag 69
           |||||||||||| || ||||||||| ||||||| | ||||||||  | ||||||||||||
Sbjct: 263 ctgatgaggagtggaggaagcgcctgacaaaag-atcagtattacattactcggcagaag 321

                                                                       
Query: 70  ggaactgagagggcattcacaggggaatactggaacactaaaaccccaggcgtctaccac 129
           || || || || ||||| || ||||||||||||||||| |||||||| ||| ||||||| 
Sbjct: 322 ggcacagaaagagcatttactggggaatactggaacaccaaaaccccgggcatctaccat 381

                                          
Query: 130 tgcatctgctgtgacacccctctgtttgagt 160
           ||  ||||||||||||||||||| |||||||
Sbjct: 382 tgtgtctgctgtgacacccctctttttgagt 412



 Score =  117 bits (59), Expect = 3e-23
 Identities = 125/147 (85%)
 Strand = Plus / Plus

                                                                       
Query: 302 gtcatctaccaagtttgatagtggtactggatggccgtcctattatcagccggttggcga 361
           |||||| ||||| ||||||||||||||||| |||||||| |||||||| ||  |||| ||
Sbjct: 411 gtcatcgaccaaatttgatagtggtactgggtggccgtcatattatcaacccattggaga 470

                                                                       
Query: 362 caatgtgaaaagcaagcttgatatgtcaatcttcttcatgcctcggaccgagtccctgtg 421
            ||||| ||  |||||||||||||||| ||| | |||||||||||||| |||   |||||
Sbjct: 471 taatgtaaagtgcaagcttgatatgtccatcatattcatgcctcggactgaggtgctgtg 530

                                      
Query: 422 cgctgtctgcgacgctcatctcgggca 448
            |||||||| ||||||||||| |||||
Sbjct: 531 tgctgtctgtgacgctcatctggggca 557
to top
>gb|AY111038.1| Zea mays CL826_-1 mRNA sequence
          Length = 839

 Score =  109 bits (55), Expect = 8e-21
 Identities = 97/111 (87%)
 Strand = Plus / Plus

                                                                       
Query: 46  cagtattatgtcactcggcagaagggaactgagagggcattcacaggggaatactggaac 105
           ||||||||||| |||||||||||||| ||||| || ||||| || |||||||||||||| 
Sbjct: 326 cagtattatgttactcggcagaagggcactgaaagagcatttactggggaatactggaat 385

                                                              
Query: 106 actaaaaccccaggcgtctaccactgcatctgctgtgacacccctctgttt 156
           ||||||||||||||| | || || ||  ||||||| |||||||||||||||
Sbjct: 386 actaaaaccccaggcatttatcagtgtgtctgctgcgacacccctctgttt 436



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 79/91 (86%)
 Strand = Plus / Plus

                                                                       
Query: 302 gtcatctaccaagtttgatagtggtactggatggccgtcctattatcagccggttggcga 361
           |||||| ||||| ||||||||||||||||| ||||| ||||||||| | ||  |||| ||
Sbjct: 439 gtcatcaaccaaatttgatagtggtactgggtggccatcctattataaaccaattggtga 498

                                          
Query: 362 caatgtgaaaagcaagcttgatatgtcaatc 392
            ||||| || |||||||||||||||||||||
Sbjct: 499 aaatgtcaagagcaagcttgatatgtcaatc 529
to top
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                         
Query: 80      gggcattcacaggggaatactggaac 105
               ||||||||||||||||||||||||||
Sbjct: 2408046 gggcattcacaggggaatactggaac 2408071
to top
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 117     aggcgtctaccactgcatctgctg 140
               ||||||||||||||||||||||||
Sbjct: 4174671 aggcgtctaccactgcatctgctg 4174648
to top
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 118     ggcgtctaccactgcatctgctg 140
               |||||||||||||||||||||||
Sbjct: 4511379 ggcgtctaccactgcatctgctg 4511357
to top
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                     
Query: 428     ctgcgacgctcatctcgggcatgttttcgacgacnggc 465
               ||||||||| ||||||||||| || ||||||||| |||
Sbjct: 4524016 ctgcgacgcccatctcgggcacgtcttcgacgacgggc 4524053
to top
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome
          Length = 1709204

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 312   aagtttgatagtggtactggatggcc 337
             |||| |||||||||||||||||||||
Sbjct: 18050 aagtatgatagtggtactggatggcc 18075
to top
>ref|XM_950999.1| Neurospora crassa OR74A hypothetical protein (NCU08771.1) partial
            mRNA
          Length = 1737

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 10   ctgatgaggagttgaagaagc 30
            |||||||||||||||||||||
Sbjct: 1004 ctgatgaggagttgaagaagc 1024
to top
>ref|XM_330887.1| Neurospora crassa OR74A hypothetical protein (NCU08771.1) partial
            mRNA
          Length = 1737

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 10   ctgatgaggagttgaagaagc 30
            |||||||||||||||||||||
Sbjct: 1004 ctgatgaggagttgaagaagc 1024
to top
>emb|BX284753.1|NCB2G14 Neurospora crassa DNA linkage group II BAC clone B2G14
          Length = 53957

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 10    ctgatgaggagttgaagaagc 30
             |||||||||||||||||||||
Sbjct: 38582 ctgatgaggagttgaagaagc 38602
to top
>gb|DQ200260.1| Taphozous mauritianus mast cell growth factor gene, intron 5-6
          Length = 520

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 363 aatgtgaaaagcaagcttga 382
           ||||||||||||||||||||
Sbjct: 74  aatgtgaaaagcaagcttga 93
to top
>gb|AC127256.4| Mus musculus BAC clone RP24-296G17 from chromosome 18, complete sequence
          Length = 178519

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 142    gacacccctctgtttgagtaagca 165
              ||||||||||| ||||||||||||
Sbjct: 172968 gacacccctctctttgagtaagca 172991
to top
>gb|AC145021.14| Medicago truncatula clone mth2-23a16, complete sequence
          Length = 119096

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   ttccttgtgttttaggtcat 306
             ||||||||||||||||||||
Sbjct: 18375 ttccttgtgttttaggtcat 18394
to top
>gb|AF398900.1| Phomopsis longicolla isolate NEB94 translation elongation factor
           1-alpha gene, partial cds
          Length = 367

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 419 gtgcgctgtctgcgacgctc 438
           ||||||||||||||||||||
Sbjct: 93  gtgcgctgtctgcgacgctc 112
to top
>gb|AF398899.1| Phomopsis longicolla isolate AK76 translation elongation factor
           1-alpha gene, partial cds
          Length = 367

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 419 gtgcgctgtctgcgacgctc 438
           ||||||||||||||||||||
Sbjct: 93  gtgcgctgtctgcgacgctc 112
to top
>gb|AF398898.1| Phomopsis longicolla isolate 95-VS-24 translation elongation factor
           1-alpha gene, partial cds
          Length = 367

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 419 gtgcgctgtctgcgacgctc 438
           ||||||||||||||||||||
Sbjct: 93  gtgcgctgtctgcgacgctc 112
to top
>gb|AF398897.1| Phomopsis longicolla isolate 628 translation elongation factor
           1-alpha gene, partial cds
          Length = 367

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 419 gtgcgctgtctgcgacgctc 438
           ||||||||||||||||||||
Sbjct: 93  gtgcgctgtctgcgacgctc 112
to top
>gb|AF398896.1| Phomopsis longicolla isolate 600 translation elongation factor
           1-alpha gene, partial cds
          Length = 367

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 419 gtgcgctgtctgcgacgctc 438
           ||||||||||||||||||||
Sbjct: 93  gtgcgctgtctgcgacgctc 112
to top
>gb|AF398894.1| Diaporthe phaseolorum isolate SW93-5 translation elongation factor
           1-alpha gene, partial cds
          Length = 361

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 419 gtgcgctgtctgcgacgctc 438
           ||||||||||||||||||||
Sbjct: 93  gtgcgctgtctgcgacgctc 112
to top
>emb|BX842631.1| Neurospora crassa DNA linkage group I BAC contig B1O14
          Length = 119219

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   tgcacctgaaatgctatctg 257
             ||||||||||||||||||||
Sbjct: 64966 tgcacctgaaatgctatctg 64947
to top
>gb|AC078985.14| Homo sapiens 3q BAC RP11-82C9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 180982

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 254    tctgccattgtgctcattgt 273
              ||||||||||||||||||||
Sbjct: 162360 tctgccattgtgctcattgt 162379
to top
>dbj|AK079818.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A430076E10 product:weakly similar to
            GLUCOSAMINE-6-PHOSPHATE ISOMERASE [Homo sapiens], full
            insert sequence
          Length = 1736

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 142  gacacccctctgtttgagtaagca 165
            ||||||||||| ||||||||||||
Sbjct: 1470 gacacccctctctttgagtaagca 1447
to top
>ref|NM_001002094.1| Danio rerio zgc:86909 (zgc:86909), mRNA
          Length = 1983

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 53  atgtcactcggcagaagggaactgagagggcattcacagg 92
           |||| |||| ||||||||| || ||||| |||||||||||
Sbjct: 324 atgttactcagcagaagggcacagagagcgcattcacagg 363
to top
>gb|BC071530.1| Danio rerio zgc:86909, mRNA (cDNA clone MGC:86909 IMAGE:6905546),
           complete cds
          Length = 1983

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 53  atgtcactcggcagaagggaactgagagggcattcacagg 92
           |||| |||| ||||||||| || ||||| |||||||||||
Sbjct: 324 atgttactcagcagaagggcacagagagcgcattcacagg 363
to top
>dbj|AP000610.5| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-21K8, complete
            sequence
          Length = 26000

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 435  gctcatctcgggcatgtttt 454
            ||||||||||||||||||||
Sbjct: 5863 gctcatctcgggcatgtttt 5844
to top
>gb|AC149054.3| Mus musculus BAC clone RP23-443H21 from 18, complete sequence
          Length = 210613

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 142   gacacccctctgtttgagtaagca 165
             ||||||||||| ||||||||||||
Sbjct: 60696 gacacccctctctttgagtaagca 60719


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,523,270
Number of Sequences: 3902068
Number of extensions: 3523270
Number of successful extensions: 57068
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56935
Number of HSP's gapped (non-prelim): 129
length of query: 465
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 443
effective length of database: 17,147,199,772
effective search space: 7596209498996
effective search space used: 7596209498996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top