ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal19b18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190943.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1206 Score = 615 bits (310), Expect = e-173 Identities = 508/574 (88%) Strand = Plus / Plus Query: 13 agagtcgccgcgtcggccgagcaagggaggaagaaaatcgagcttacgtatgacgcacaa 72 ||||||||||||||||| ||||||||||||| | || | ||| || |||||| |||| Sbjct: 148 agagtcgccgcgtcggcggagcaagggaggaggcaagtggaggttgagtatgatctacaa 207 Query: 73 gccaagtttaaccagctagccgaccaaattgacaaggatgtggggattacacggctcaac 132 || ||||| ||| ||||||| |||||||||||| || ||| |||||||||||||| ||| Sbjct: 208 gcaaagttcaacaagctagcggaccaaattgaccagaatgctgggattacacggctgaac 267 Query: 133 ctgttctcaccttgcaaaattaatgtcttcttgaggataaccgggaagagaccagatggg 192 || ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||| Sbjct: 268 ctattctcaccttgcaaaattaatgtgttcttgaggataacgggtaagagaccagatggg 327 Query: 193 ttccatgacctggcttctctgtttcacgtggttagtttgggtgatactatcaaattctca 252 |||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||| Sbjct: 328 ttccatgacctggcttctctgtttcatgtgataagtttgggtgatactatcaaattctca 387 Query: 253 ctgtcgccaagtaagagcaaagatcggctatcaaccaatgttgcaggtgtcccagttgat 312 |||| |||||||||||||||||||| | ||||||||||| |||||||||||||||||| Sbjct: 388 ttgtcaccaagtaagagcaaagatcgcttgtcaaccaatgtagcaggtgtcccagttgat 447 Query: 313 gagagtaacttgatcatcagggcacttgatctgtaccgcaagaaaactggcaccgataag 372 || || || |||||||||| |||||| |||| ||||||||||||||||| || || || Sbjct: 448 gaaagcaatttgatcatcaaggcactcaatctttaccgcaagaaaactggaactgacaac 507 Query: 373 cacttttggatacatcttgataagaaggtcccaactggtgctggtcttggtggaggaagc 432 |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 508 tttttttggattcatcttgataagaaggtccctactggtgctggtcttggtggtggaagc 567 Query: 433 agtaatgctgcaactgcactatgggctgctaaccagtttagtggtagcattgcttcagaa 492 ||||||||||||||||| || ||||| || |||||||||||||| |||||||||||||| Sbjct: 568 agtaatgctgcaactgcgctgtgggccgccaaccagtttagtggctgcattgcttcagaa 627 Query: 493 aaagatcttcaagaatggtctggtgagattggatcagatatccccttcttcttttcacga 552 || || ||||| || |||||||| ||||| ||||| ||||| |||||||||||||||| | Sbjct: 628 aaggagcttcaggagtggtctggagagataggatcggatattcccttcttcttttcacaa 687 Query: 553 ggagcagcatattgtaccggtagaggagagattg 586 |||||||| ||||||||||||||||||||||||| Sbjct: 688 ggagcagcgtattgtaccggtagaggagagattg 721
>dbj|AK067589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111G19, full insert sequence Length = 1612 Score = 615 bits (310), Expect = e-173 Identities = 508/574 (88%) Strand = Plus / Plus Query: 13 agagtcgccgcgtcggccgagcaagggaggaagaaaatcgagcttacgtatgacgcacaa 72 ||||||||||||||||| ||||||||||||| | || | ||| || |||||| |||| Sbjct: 235 agagtcgccgcgtcggcggagcaagggaggaggcaagtggaggttgagtatgatctacaa 294 Query: 73 gccaagtttaaccagctagccgaccaaattgacaaggatgtggggattacacggctcaac 132 || ||||| ||| ||||||| |||||||||||| || ||| |||||||||||||| ||| Sbjct: 295 gcaaagttcaacaagctagcggaccaaattgaccagaatgctgggattacacggctgaac 354 Query: 133 ctgttctcaccttgcaaaattaatgtcttcttgaggataaccgggaagagaccagatggg 192 || ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||| Sbjct: 355 ctattctcaccttgcaaaattaatgtgttcttgaggataacgggtaagagaccagatggg 414 Query: 193 ttccatgacctggcttctctgtttcacgtggttagtttgggtgatactatcaaattctca 252 |||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||| Sbjct: 415 ttccatgacctggcttctctgtttcatgtgataagtttgggtgatactatcaaattctca 474 Query: 253 ctgtcgccaagtaagagcaaagatcggctatcaaccaatgttgcaggtgtcccagttgat 312 |||| |||||||||||||||||||| | ||||||||||| |||||||||||||||||| Sbjct: 475 ttgtcaccaagtaagagcaaagatcgcttgtcaaccaatgtagcaggtgtcccagttgat 534 Query: 313 gagagtaacttgatcatcagggcacttgatctgtaccgcaagaaaactggcaccgataag 372 || || || |||||||||| |||||| |||| ||||||||||||||||| || || || Sbjct: 535 gaaagcaatttgatcatcaaggcactcaatctttaccgcaagaaaactggaactgacaac 594 Query: 373 cacttttggatacatcttgataagaaggtcccaactggtgctggtcttggtggaggaagc 432 |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 595 tttttttggattcatcttgataagaaggtccctactggtgctggtcttggtggtggaagc 654 Query: 433 agtaatgctgcaactgcactatgggctgctaaccagtttagtggtagcattgcttcagaa 492 ||||||||||||||||| || ||||| || |||||||||||||| |||||||||||||| Sbjct: 655 agtaatgctgcaactgcgctgtgggccgccaaccagtttagtggctgcattgcttcagaa 714 Query: 493 aaagatcttcaagaatggtctggtgagattggatcagatatccccttcttcttttcacga 552 || || ||||| || |||||||| ||||| ||||| ||||| |||||||||||||||| | Sbjct: 715 aaggagcttcaggagtggtctggagagataggatcggatattcccttcttcttttcacaa 774 Query: 553 ggagcagcatattgtaccggtagaggagagattg 586 |||||||| ||||||||||||||||||||||||| Sbjct: 775 ggagcagcgtattgtaccggtagaggagagattg 808
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 250 bits (126), Expect = 4e-63 Identities = 180/198 (90%) Strand = Plus / Plus Query: 385 catcttgataagaaggtcccaactggtgctggtcttggtggaggaagcagtaatgctgca 444 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 33967068 catcttgataagaaggtccctactggtgctggtcttggtggtggaagcagtaatgctgca 33967127 Query: 445 actgcactatgggctgctaaccagtttagtggtagcattgcttcagaaaaagatcttcaa 504 ||||| || ||||| || |||||||||||||| |||||||||||||||| || ||||| Sbjct: 33967128 actgcgctgtgggccgccaaccagtttagtggctgcattgcttcagaaaaggagcttcag 33967187 Query: 505 gaatggtctggtgagattggatcagatatccccttcttcttttcacgaggagcagcatat 564 || |||||||| ||||| ||||| ||||| |||||||||||||||| ||||||||| ||| Sbjct: 33967188 gagtggtctggagagataggatcggatattcccttcttcttttcacaaggagcagcgtat 33967247 Query: 565 tgtaccggtagaggagag 582 |||||||||||||||||| Sbjct: 33967248 tgtaccggtagaggagag 33967265 Score = 129 bits (65), Expect = 1e-26 Identities = 83/89 (93%) Strand = Plus / Plus Query: 226 agtttgggtgatactatcaaattctcactgtcgccaagtaagagcaaagatcggctatca 285 ||||||||||||||||||||||||||| |||| |||||||||||||||||||| | ||| Sbjct: 33966650 agtttgggtgatactatcaaattctcattgtcaccaagtaagagcaaagatcgcttgtca 33966709 Query: 286 accaatgttgcaggtgtcccagttgatga 314 |||||||| |||||||||||||||||||| Sbjct: 33966710 accaatgtagcaggtgtcccagttgatga 33966738 Score = 111 bits (56), Expect = 3e-21 Identities = 65/68 (95%) Strand = Plus / Plus Query: 151 attaatgtcttcttgaggataaccgggaagagaccagatgggttccatgacctggcttct 210 |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct: 33965855 attaatgtgttcttgaggataacgggtaagagaccagatgggttccatgacctggcttct 33965914 Query: 211 ctgtttca 218 |||||||| Sbjct: 33965915 ctgtttca 33965922 Score = 83.8 bits (42), Expect = 6e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 69 acaagccaagtttaaccagctagccgaccaaattgacaaggatgtggggattacacggct 128 |||||| ||||| ||| ||||||| |||||||||||| || ||| |||||||||||||| Sbjct: 33965678 acaagcaaagttcaacaagctagcggaccaaattgaccagaatgctgggattacacggct 33965737 Query: 129 caacctgttctcaccttgcaaa 150 ||||| ||||||||||||||| Sbjct: 33965738 gaacctattctcaccttgcaaa 33965759 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 13 agagtcgccgcgtcggccgagcaagggagga 43 ||||||||||||||||| ||||||||||||| Sbjct: 33964717 agagtcgccgcgtcggcggagcaagggagga 33964747 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 324 gatcatcagggcacttgatctgtaccgcaagaaaactgg 362 |||||||| |||||| |||| ||||||||||||||||| Sbjct: 33966851 gatcatcaaggcactcaatctttaccgcaagaaaactgg 33966889
>dbj|AP003221.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0003D09 Length = 161970 Score = 250 bits (126), Expect = 4e-63 Identities = 180/198 (90%) Strand = Plus / Plus Query: 385 catcttgataagaaggtcccaactggtgctggtcttggtggaggaagcagtaatgctgca 444 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 98511 catcttgataagaaggtccctactggtgctggtcttggtggtggaagcagtaatgctgca 98570 Query: 445 actgcactatgggctgctaaccagtttagtggtagcattgcttcagaaaaagatcttcaa 504 ||||| || ||||| || |||||||||||||| |||||||||||||||| || ||||| Sbjct: 98571 actgcgctgtgggccgccaaccagtttagtggctgcattgcttcagaaaaggagcttcag 98630 Query: 505 gaatggtctggtgagattggatcagatatccccttcttcttttcacgaggagcagcatat 564 || |||||||| ||||| ||||| ||||| |||||||||||||||| ||||||||| ||| Sbjct: 98631 gagtggtctggagagataggatcggatattcccttcttcttttcacaaggagcagcgtat 98690 Query: 565 tgtaccggtagaggagag 582 |||||||||||||||||| Sbjct: 98691 tgtaccggtagaggagag 98708 Score = 129 bits (65), Expect = 1e-26 Identities = 83/89 (93%) Strand = Plus / Plus Query: 226 agtttgggtgatactatcaaattctcactgtcgccaagtaagagcaaagatcggctatca 285 ||||||||||||||||||||||||||| |||| |||||||||||||||||||| | ||| Sbjct: 98093 agtttgggtgatactatcaaattctcattgtcaccaagtaagagcaaagatcgcttgtca 98152 Query: 286 accaatgttgcaggtgtcccagttgatga 314 |||||||| |||||||||||||||||||| Sbjct: 98153 accaatgtagcaggtgtcccagttgatga 98181 Score = 111 bits (56), Expect = 3e-21 Identities = 65/68 (95%) Strand = Plus / Plus Query: 151 attaatgtcttcttgaggataaccgggaagagaccagatgggttccatgacctggcttct 210 |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct: 97298 attaatgtgttcttgaggataacgggtaagagaccagatgggttccatgacctggcttct 97357 Query: 211 ctgtttca 218 |||||||| Sbjct: 97358 ctgtttca 97365 Score = 83.8 bits (42), Expect = 6e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 69 acaagccaagtttaaccagctagccgaccaaattgacaaggatgtggggattacacggct 128 |||||| ||||| ||| ||||||| |||||||||||| || ||| |||||||||||||| Sbjct: 97121 acaagcaaagttcaacaagctagcggaccaaattgaccagaatgctgggattacacggct 97180 Query: 129 caacctgttctcaccttgcaaa 150 ||||| ||||||||||||||| Sbjct: 97181 gaacctattctcaccttgcaaa 97202 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 13 agagtcgccgcgtcggccgagcaagggagga 43 ||||||||||||||||| ||||||||||||| Sbjct: 96160 agagtcgccgcgtcggcggagcaagggagga 96190 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 324 gatcatcagggcacttgatctgtaccgcaagaaaactgg 362 |||||||| |||||| |||| ||||||||||||||||| Sbjct: 98294 gatcatcaaggcactcaatctttaccgcaagaaaactgg 98332
>emb|AJ249324.1|MXP249324 Mentha x piperita mRNA for isopentenyl monophosphate kinase (ipk gene) Length = 1481 Score = 145 bits (73), Expect = 2e-31 Identities = 178/213 (83%) Strand = Plus / Plus Query: 370 aagcacttttggatacatcttgataagaaggtcccaactggtgctggtcttggtggagga 429 |||||||||||||| ||||||||||||||||| || ||||| ||||| ||||| || || Sbjct: 537 aagcacttttggattcatcttgataagaaggttccgactggagctgggcttgggggtggc 596 Query: 430 agcagtaatgctgcaactgcactatgggctgctaaccagtttagtggtagcattgcttca 489 || || |||||||| ||||| ||||||| || || ||||| ||||| ||||||| | Sbjct: 597 agtagcaatgctgctactgctttatgggcagcaaatcagttcagtggctgcattgcaact 656 Query: 490 gaaaaagatcttcaagaatggtctggtgagattggatcagatatccccttcttcttttca 549 ||||| |||||||||||||||||||| || ||||| || |||||||| ||||| || || Sbjct: 657 gaaaaggatcttcaagaatggtctggagaaattggctctgatatcccgttctttttctct 716 Query: 550 cgaggagcagcatattgtaccggtagaggagag 582 | ||||| ||||||||||| |||||||||||| Sbjct: 717 catggagctgcatattgtacgggtagaggagag 749
>gb|AF179283.1|AF179283 Mentha x piperita isopentenyl monophosphate kinase (IPK) mRNA, complete cds Length = 1481 Score = 145 bits (73), Expect = 2e-31 Identities = 178/213 (83%) Strand = Plus / Plus Query: 370 aagcacttttggatacatcttgataagaaggtcccaactggtgctggtcttggtggagga 429 |||||||||||||| ||||||||||||||||| || ||||| ||||| ||||| || || Sbjct: 537 aagcacttttggattcatcttgataagaaggttccgactggagctgggcttgggggtggc 596 Query: 430 agcagtaatgctgcaactgcactatgggctgctaaccagtttagtggtagcattgcttca 489 || || |||||||| ||||| ||||||| || || ||||| ||||| ||||||| | Sbjct: 597 agtagcaatgctgctactgctttatgggcagcaaatcagttcagtggctgcattgcaact 656 Query: 490 gaaaaagatcttcaagaatggtctggtgagattggatcagatatccccttcttcttttca 549 ||||| |||||||||||||||||||| || ||||| || |||||||| ||||| || || Sbjct: 657 gaaaaggatcttcaagaatggtctggagaaattggctctgatatcccgttctttttctct 716 Query: 550 cgaggagcagcatattgtaccggtagaggagag 582 | ||||| ||||||||||| |||||||||||| Sbjct: 717 catggagctgcatattgtacgggtagaggagag 749
>gb|DQ269453.1| Stevia rebaudiana 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase mRNA, partial cds Length = 428 Score = 135 bits (68), Expect = 2e-28 Identities = 164/196 (83%) Strand = Plus / Plus Query: 374 acttttggatacatcttgataagaaggtcccaactggtgctggtcttggtggaggaagca 433 |||||||||| ||||| ||||||||||| ||||| |||||||| |||||||| || |||| Sbjct: 233 acttttggattcatctggataagaaggtgccaacaggtgctgggcttggtggtggtagca 292 Query: 434 gtaatgctgcaactgcactatgggctgctaaccagtttagtggtagcattgcttcagaaa 493 | ||||| |||||||| ||||||| || || |||||||||||| | ||||| | |||| Sbjct: 293 gcaatgcagcaactgctttatgggcagcaaatcagtttagtggttgtattgccactgaaa 352 Query: 494 aagatcttcaagaatggtctggtgagattggatcagatatccccttcttcttttcacgag 553 | || || |||||||||||||| || ||||| || ||||| || ||||| ||||||| | Sbjct: 353 aggagctccaagaatggtctggcgaaattggttctgatattccgttctttttttcacatg 412 Query: 554 gagcagcatattgtac 569 |||||||||| ||||| Sbjct: 413 gagcagcatactgtac 428
>gb|U62773.1|SLU62773 Lycopersicon esculentum ripening-associated protein (pTOM41) gene, partial cds; nuclear gene for chromoplast product Length = 1423 Score = 107 bits (54), Expect = 4e-20 Identities = 165/202 (81%) Strand = Plus / Plus Query: 374 acttttggatacatcttgataagaaggtcccaactggtgctggtcttggtggaggaagca 433 |||||||||| |||||||||||||| || || ||||| |||||||||||||| || |||| Sbjct: 589 acttttggattcatcttgataagaaagtgcctactggagctggtcttggtggtgggagca 648 Query: 434 gtaatgctgcaactgcactatgggctgctaaccagtttagtggtagcattgcttcagaaa 493 ||||||||||||| | || ||||| || || || || |||||| | |||| | |||| Sbjct: 649 gtaatgctgcaacaactctgtgggcagcaaatcaattcagtggttgtgttgccactgaaa 708 Query: 494 aagatcttcaagaatggtctggtgagattggatcagatatccccttcttcttttcacgag 553 | || || ||||| ||||||||||||||||| || ||||| || |||||||| || | | Sbjct: 709 aggagctccaagagtggtctggtgagattggttctgatattcctttcttcttctctcatg 768 Query: 554 gagcagcatattgtaccggtag 575 ||||||| || ||||| ||||| Sbjct: 769 gagcagcctactgtacgggtag 790
>gb|AF263101.1|AF263101 Lycopersicon esculentum 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (ispE) mRNA, partial cds; chloroplast gene for chloroplast product Length = 1206 Score = 107 bits (54), Expect = 4e-20 Identities = 165/202 (81%) Strand = Plus / Plus Query: 374 acttttggatacatcttgataagaaggtcccaactggtgctggtcttggtggaggaagca 433 |||||||||| |||||||||||||| || || ||||| |||||||||||||| || |||| Sbjct: 512 acttttggattcatcttgataagaaagtgcctactggagctggtcttggtggtgggagca 571 Query: 434 gtaatgctgcaactgcactatgggctgctaaccagtttagtggtagcattgcttcagaaa 493 ||||||||||||| | || ||||| || || || || |||||| | |||| | |||| Sbjct: 572 gtaatgctgcaacaactctgtgggcagcaaatcaattcagtggttgtgttgccactgaaa 631 Query: 494 aagatcttcaagaatggtctggtgagattggatcagatatccccttcttcttttcacgag 553 | || || ||||| ||||||||||||||||| || ||||| || |||||||| || | | Sbjct: 632 aggagctccaagagtggtctggtgagattggttctgatattcctttcttcttctctcatg 691 Query: 554 gagcagcatattgtaccggtag 575 ||||||| || ||||| ||||| Sbjct: 692 gagcagcctactgtacgggtag 713
>gb|AF258339.1|AF258339 Expression vector pNCO-HIS6-TM-YCHB 4-diphosphocytidyl-2C-methyl-D-erythritol kinase mRNA, complete cds Length = 4441 Score = 107 bits (54), Expect = 4e-20 Identities = 165/202 (81%) Strand = Plus / Plus Query: 374 acttttggatacatcttgataagaaggtcccaactggtgctggtcttggtggaggaagca 433 |||||||||| |||||||||||||| || || ||||| |||||||||||||| || |||| Sbjct: 416 acttttggattcatcttgataagaaagtgcctactggagctggtcttggtggtgggagca 475 Query: 434 gtaatgctgcaactgcactatgggctgctaaccagtttagtggtagcattgcttcagaaa 493 ||||||||||||| | || ||||| || || || || |||||| | |||| | |||| Sbjct: 476 gtaatgctgcaacaactctgtgggcagcaaatcaattcagtggttgtgttgccactgaaa 535 Query: 494 aagatcttcaagaatggtctggtgagattggatcagatatccccttcttcttttcacgag 553 | || || ||||| ||||||||||||||||| || ||||| || |||||||| || | | Sbjct: 536 aggagctccaagagtggtctggtgagattggttctgatattcctttcttcttctctcatg 595 Query: 554 gagcagcatattgtaccggtag 575 ||||||| || ||||| ||||| Sbjct: 596 gagcagcctactgtacgggtag 617
>ref|NM_128250.2| Arabidopsis thaliana ATCDPMEK; ATP binding / kinase AT2G26930 (ATCDPMEK) mRNA, complete cds Length = 1777 Score = 67.9 bits (34), Expect = 4e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 136 ttctcaccttgcaaaattaatgtcttcttgaggataaccgggaagagaccagatgggttc 195 |||||||||||||| || ||||| ||||||||||| ||||| ||| || ||||||||| Sbjct: 243 ttctcaccttgcaagatcaatgttttcttgaggatcaccggaaagcgagaagatgggttt 302 Query: 196 catgacctggcttctctgtttcacgtggttagtttgggtgatactatcaaattctcactg 255 ||||| | || ||| ||||||| ||| |||| || || || ||||| ||||||||| || Sbjct: 303 catgatttagcctctttgtttcatgtgattagcttaggagacactattaaattctcattg 362 Query: 256 tc 257 || Sbjct: 363 tc 364 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 391 gataagaaggtcccaactggtgctggtcttggtggaggaagcagtaatgctgcaactgca 450 ||||||||||| || || || ||||| || ||||| ||||| |||||||||||||||||| Sbjct: 498 gataagaaggtgcctaccggggctggactcggtggtggaagtagtaatgctgcaactgca 557 Query: 451 ctatgggc 458 || ||||| Sbjct: 558 ctctgggc 565 Score = 48.1 bits (24), Expect = 0.033 Identities = 60/72 (83%) Strand = Plus / Plus Query: 515 gtgagattggatcagatatccccttcttcttttcacgaggagcagcatattgtaccggta 574 |||| ||||| |||||||| || |||||||| || | ||||| || ||||||||||| | Sbjct: 622 gtgaaattgggtcagatattcctttcttcttctcgcatggagctgcctattgtaccggga 681 Query: 575 gaggagagattg 586 |||| ||||||| Sbjct: 682 gaggtgagattg 693
>gb|BT000208.1| Arabidopsis thaliana putative ripening-associated protein (At2g26930) mRNA, complete cds Length = 1222 Score = 67.9 bits (34), Expect = 4e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 136 ttctcaccttgcaaaattaatgtcttcttgaggataaccgggaagagaccagatgggttc 195 |||||||||||||| || ||||| ||||||||||| ||||| ||| || ||||||||| Sbjct: 226 ttctcaccttgcaagatcaatgttttcttgaggatcaccggaaagcgagaagatgggttt 285 Query: 196 catgacctggcttctctgtttcacgtggttagtttgggtgatactatcaaattctcactg 255 ||||| | || ||| ||||||| ||| |||| || || || ||||| ||||||||| || Sbjct: 286 catgatttagcctctttgtttcatgtgattagcttaggagacactattaaattctcattg 345 Query: 256 tc 257 || Sbjct: 346 tc 347 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 391 gataagaaggtcccaactggtgctggtcttggtggaggaagcagtaatgctgcaactgca 450 ||||||||||| || || || ||||| || ||||| ||||| |||||||||||||||||| Sbjct: 481 gataagaaggtgcctaccggggctggactcggtggtggaagtagtaatgctgcaactgca 540 Query: 451 ctatgggc 458 || ||||| Sbjct: 541 ctctgggc 548
>gb|AY136394.1| Arabidopsis thaliana putative ripening-associated protein (At2g26930) mRNA, complete cds Length = 1285 Score = 67.9 bits (34), Expect = 4e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 136 ttctcaccttgcaaaattaatgtcttcttgaggataaccgggaagagaccagatgggttc 195 |||||||||||||| || ||||| ||||||||||| ||||| ||| || ||||||||| Sbjct: 243 ttctcaccttgcaagatcaatgttttcttgaggatcaccggaaagcgagaagatgggttt 302 Query: 196 catgacctggcttctctgtttcacgtggttagtttgggtgatactatcaaattctcactg 255 ||||| | || ||| ||||||| ||| |||| || || || ||||| ||||||||| || Sbjct: 303 catgatttagcctctttgtttcatgtgattagcttaggagacactattaaattctcattg 362 Query: 256 tc 257 || Sbjct: 363 tc 364 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 391 gataagaaggtcccaactggtgctggtcttggtggaggaagcagtaatgctgcaactgca 450 ||||||||||| || || || ||||| || ||||| ||||| |||||||||||||||||| Sbjct: 498 gataagaaggtgcctaccggggctggactcggtggtggaagtagtaatgctgcaactgca 557 Query: 451 ctatgggc 458 || ||||| Sbjct: 558 ctctgggc 565
>emb|BX818922.1|CNS0AAEF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB27ZF02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1252 Score = 67.9 bits (34), Expect = 4e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 136 ttctcaccttgcaaaattaatgtcttcttgaggataaccgggaagagaccagatgggttc 195 |||||||||||||| || ||||| ||||||||||| ||||| ||| || ||||||||| Sbjct: 234 ttctcaccttgcaagatcaatgttttcttgaggatcaccggaaagcgagaagatgggttt 293 Query: 196 catgacctggcttctctgtttcacgtggttagtttgggtgatactatcaaattctcactg 255 ||||| | || ||| ||||||| ||| |||| || || || ||||| ||||||||| || Sbjct: 294 catgatttagcctctttgtttcatgtgattagcttaggagacactattaaattctcattg 353 Query: 256 tc 257 || Sbjct: 354 tc 355 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 391 gataagaaggtcccaactggtgctggtcttggtggaggaagcagtaatgctgcaactgca 450 ||||||||||| || || || ||||| || ||||| ||||| |||||||||||||||||| Sbjct: 489 gataagaaggtgcctaccggggctggactcggtggtggaagtagtaatgctgcaactgca 548 Query: 451 ctatgggc 458 || ||||| Sbjct: 549 ctctgggc 556
>emb|BX821564.1|CNS0A98L Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL54ZA07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1237 Score = 67.9 bits (34), Expect = 4e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 136 ttctcaccttgcaaaattaatgtcttcttgaggataaccgggaagagaccagatgggttc 195 |||||||||||||| || ||||| ||||||||||| ||||| ||| || ||||||||| Sbjct: 231 ttctcaccttgcaagatcaatgttttcttgaggatcaccggaaagcgagaagatgggttt 290 Query: 196 catgacctggcttctctgtttcacgtggttagtttgggtgatactatcaaattctcactg 255 ||||| | || ||| ||||||| ||| |||| || || || ||||| ||||||||| || Sbjct: 291 catgatttagcctctttgtttcatgtgattagcttaggagacactattaaattctcattg 350 Query: 256 tc 257 || Sbjct: 351 tc 352 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 391 gataagaaggtcccaactggtgctggtcttggtggaggaagcagtaatgctgcaactgca 450 ||||||||||| || || || ||||| || ||||| ||||| |||||||||||||||||| Sbjct: 486 gataagaaggtgcctaccggggctggactcggtggtggaagtagtaatgctgcaactgca 545 Query: 451 ctatgggc 458 || ||||| Sbjct: 546 ctctgggc 553 Score = 48.1 bits (24), Expect = 0.033 Identities = 60/72 (83%) Strand = Plus / Plus Query: 515 gtgagattggatcagatatccccttcttcttttcacgaggagcagcatattgtaccggta 574 |||| ||||| |||||||| || |||||||| || | ||||| || ||||||||||| | Sbjct: 610 gtgaaattgggtcagatattcctttcttcttctcgcatggagctgcctattgtaccggga 669 Query: 575 gaggagagattg 586 |||| ||||||| Sbjct: 670 gaggtgagattg 681
>dbj|AB037877.1| Arabidopsis thaliana ATCDPMEK mRNA for 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase, complete cds Length = 1288 Score = 67.9 bits (34), Expect = 4e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 136 ttctcaccttgcaaaattaatgtcttcttgaggataaccgggaagagaccagatgggttc 195 |||||||||||||| || ||||| ||||||||||| ||||| ||| || ||||||||| Sbjct: 231 ttctcaccttgcaagatcaatgttttcttgaggatcaccggaaagcgagaagatgggttt 290 Query: 196 catgacctggcttctctgtttcacgtggttagtttgggtgatactatcaaattctcactg 255 ||||| | || ||| ||||||| ||| |||| || || || ||||| ||||||||| || Sbjct: 291 catgatttagcctctttgtttcatgtgattagcttaggagacactattaaattctcattg 350 Query: 256 tc 257 || Sbjct: 351 tc 352 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 391 gataagaaggtcccaactggtgctggtcttggtggaggaagcagtaatgctgcaactgca 450 ||||||||||| || || || ||||| || ||||| ||||| |||||||||||||||||| Sbjct: 486 gataagaaggtgcctaccggggctggactcggtggtggaagtagtaatgctgcaactgca 545 Query: 451 ctatgggc 458 || ||||| Sbjct: 546 ctctgggc 553 Score = 48.1 bits (24), Expect = 0.033 Identities = 60/72 (83%) Strand = Plus / Plus Query: 515 gtgagattggatcagatatccccttcttcttttcacgaggagcagcatattgtaccggta 574 |||| ||||| |||||||| || |||||||| || | ||||| || ||||||||||| | Sbjct: 610 gtgaaattgggtcagatattcctttcttcttctcgcatggagctgcctattgtaccggga 669 Query: 575 gaggagagattg 586 |||| ||||||| Sbjct: 670 gaggtgagattg 681
>gb|AC005168.3| Arabidopsis thaliana chromosome 2 clone F12C20 map B68, complete sequence Length = 87978 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 391 gataagaaggtcccaactggtgctggtcttggtggaggaagcagtaatgctgcaactgca 450 ||||||||||| || || || ||||| || ||||| ||||| |||||||||||||||||| Sbjct: 11332 gataagaaggtgcctaccggggctggactcggtggtggaagtagtaatgctgcaactgca 11391 Query: 451 ctatgggc 458 || ||||| Sbjct: 11392 ctctgggc 11399 Score = 40.1 bits (20), Expect = 8.0 Identities = 53/64 (82%) Strand = Plus / Plus Query: 515 gtgagattggatcagatatccccttcttcttttcacgaggagcagcatattgtaccggta 574 |||| ||||| |||||||| || |||||||| || | ||||| || ||||||||||| | Sbjct: 11456 gtgaaattgggtcagatattcctttcttcttctcgcatggagctgcctattgtaccggga 11515 Query: 575 gagg 578 |||| Sbjct: 11516 gagg 11519
>gb|AF288615.1|AF288615 Arabidopsis thaliana 4-diphosphocytidyl-2C-methyl-D-erythritol kinase (ISPE) mRNA, complete cds; chloroplast gene for chloroplast product Length = 1152 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 391 gataagaaggtcccaactggtgctggtcttggtggaggaagcagtaatgctgcaactgca 450 ||||||||||| || || || ||||| || ||||| ||||| |||||||||||||||||| Sbjct: 481 gataagaaggtgcctaccggggctggactcggtggtggaagtagtaatgctgcaactgca 540 Query: 451 ctatgggc 458 || ||||| Sbjct: 541 ctctgggc 548 Score = 60.0 bits (30), Expect = 9e-06 Identities = 99/122 (81%) Strand = Plus / Plus Query: 136 ttctcaccttgcaaaattaatgtcttcttgaggataaccgggaagagaccagatgggttc 195 |||||||||||||| || ||||| ||||||||||| ||||| ||| || ||||||||| Sbjct: 226 ttctcaccttgcaagatcaatgttttcttgaggatcaccggaaagcgagaagatgggttt 285 Query: 196 catgacctggcttctctgtttcacgtggttagtttgggtgatactatcaaattctcactg 255 ||||| | || ||| ||||||| ||| |||| || || | ||||| ||||||||| || Sbjct: 286 catgatttagcctctttgtttcatgtgattagcttaggaggcactattaaattctcattg 345 Query: 256 tc 257 || Sbjct: 346 tc 347 Score = 48.1 bits (24), Expect = 0.033 Identities = 60/72 (83%) Strand = Plus / Plus Query: 515 gtgagattggatcagatatccccttcttcttttcacgaggagcagcatattgtaccggta 574 |||| ||||| |||||||| || |||||||| || | ||||| || ||||||||||| | Sbjct: 605 gtgaaattgggtcagatattcctttcttcttctcgcatggagctgcctattgtaccggga 664 Query: 575 gaggagagattg 586 |||| ||||||| Sbjct: 665 gaggtgagattg 676
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 415 ggtcttggtggaggaagcagta 436 |||||||||||||||||||||| Sbjct: 3998096 ggtcttggtggaggaagcagta 3998075
>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome Length = 2201561 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 418 cttggtggaggaagcagtaatgctgcaac 446 |||||||||||||||||| | |||||||| Sbjct: 442193 cttggtggaggaagcagtgacgctgcaac 442221
>gb|AC132262.2| Mus musculus chromosome 5 clone RP24-370J24, complete sequence Length = 176466 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 489 agaaaaagatcttcaagaatg 509 ||||||||||||||||||||| Sbjct: 118466 agaaaaagatcttcaagaatg 118446
>gb|AC104101.5| Mus musculus BAC clone RP24-377D2 from chromosome 5, complete sequence Length = 185414 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 489 agaaaaagatcttcaagaatg 509 ||||||||||||||||||||| Sbjct: 70309 agaaaaagatcttcaagaatg 70329
>gb|AC165051.2| Phakopsora pachyrhizi clone JGIAFNA-1077C21, complete sequence Length = 35591 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 tcagaaaaagatcttcaagaa 507 ||||||||||||||||||||| Sbjct: 15318 tcagaaaaagatcttcaagaa 15298
>ref|XM_641841.1| Dictyostelium discoideum hypothetical protein (DDB0190011), partial mRNA Length = 1182 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 caactggtgctggtcttggt 423 |||||||||||||||||||| Sbjct: 299 caactggtgctggtcttggt 318
>ref|NM_012804.1| Rattus norvegicus ATP-binding cassette, sub-family D (ALD), member 3 (Abcd3), mRNA Length = 3324 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 526 tcagatatccccttcttctt 545 |||||||||||||||||||| Sbjct: 1651 tcagatatccccttcttctt 1632
>gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, complete sequence Length = 131860 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 ataagcacttttggatacat 387 |||||||||||||||||||| Sbjct: 36900 ataagcacttttggatacat 36881
>gb|AC134908.5| Mus musculus BAC clone RP23-377L13 from chromosome 17, complete sequence Length = 189458 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 401 tcccaactggtgctggtcttggtg 424 ||||| |||||||||||||||||| Sbjct: 60382 tcccatctggtgctggtcttggtg 60359
>gb|AC161425.3| Mus musculus BAC clone RP23-265K1 from chromosome 3, complete sequence Length = 214631 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 541 ttcttttcacgaggagcagcatat 564 ||||||||| |||||||||||||| Sbjct: 13805 ttcttttcaagaggagcagcatat 13782
>gb|AC073208.4| Homo sapiens BAC clone RP11-418B19 from 7, complete sequence Length = 71606 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 caaattgacaaggatgtggg 116 |||||||||||||||||||| Sbjct: 19249 caaattgacaaggatgtggg 19230
>gb|AC125464.4| Mus musculus BAC clone RP23-113C9 from 14, complete sequence Length = 203804 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 attggatcagatatcccctt 539 |||||||||||||||||||| Sbjct: 14101 attggatcagatatcccctt 14120
>gb|AC122320.4| Mus musculus BAC clone RP23-315F17 from 14, complete sequence Length = 197655 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 attggatcagatatcccctt 539 |||||||||||||||||||| Sbjct: 48999 attggatcagatatcccctt 48980
>gb|AC146048.3| Pan troglodytes BAC clone RP43-44J1 from 7, complete sequence Length = 135620 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 caaattgacaaggatgtggg 116 |||||||||||||||||||| Sbjct: 46248 caaattgacaaggatgtggg 46229
>emb|AL390205.17| Human DNA sequence from clone RP11-15H7 on chromosome 6 Contains an ATP synthase H+ transporting mitochondrial F0 complex subunit b variant 1 (ATP5F1) pseudogene and a thyroid hormone receptor interactor 4 (TRIP4) pseudogene, complete sequence Length = 155680 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cttgcaaaattaatgtcttc 162 |||||||||||||||||||| Sbjct: 153055 cttgcaaaattaatgtcttc 153074
>emb|AL009176.1|HS137D17 Human DNA sequence from clone RP1-137D17 on chromosome 6q27 Contains a novel gene (FLJ21008) and two CpG islands, complete sequence Length = 87903 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 aggaagaaaatcgagcttac 59 |||||||||||||||||||| Sbjct: 29031 aggaagaaaatcgagcttac 29050
>emb|BX682552.9| Zebrafish DNA sequence from clone DKEY-120C6 in linkage group 3, complete sequence Length = 228044 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 tggtgctggtcttggtggag 427 |||||||||||||||||||| Sbjct: 224971 tggtgctggtcttggtggag 224990
>dbj|AK055570.1| Homo sapiens cDNA FLJ31008 fis, clone HLUNG2000130 Length = 2281 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 aggaagaaaatcgagcttac 59 |||||||||||||||||||| Sbjct: 737 aggaagaaaatcgagcttac 718
>gb|AC011356.6| Homo sapiens chromosome 5 clone CTC-359M8, complete sequence Length = 62242 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 141 accttgcaaaattaatgtcttcttgaggataa 172 ||||||| |||||||| | ||||||||||||| Sbjct: 17129 accttgccaaattaattttttcttgaggataa 17160
>gb|AE002160.2| Chlamydia muridarum Nigg, complete genome Length = 1072950 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 418 cttggtggaggaagcagtaatgctgcaactgc 449 |||| |||||| ||||| |||||||||||||| Sbjct: 219473 cttgctggaggtagcagcaatgctgcaactgc 219504
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 ataagcacttttggatacat 387 |||||||||||||||||||| Sbjct: 22335265 ataagcacttttggatacat 22335246
>gb|AC090502.11| Homo sapiens 12 BAC RP11-274M17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 173301 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ggtagcattgcttcagaaaa 494 |||||||||||||||||||| Sbjct: 52501 ggtagcattgcttcagaaaa 52482
>dbj|D90038.1|RATPMP70 Rattus norvegicus PMP70 mRNA for 70-kDa peroxisomal membrane protein, complete cds Length = 3324 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 526 tcagatatccccttcttctt 545 |||||||||||||||||||| Sbjct: 1651 tcagatatccccttcttctt 1632
>gb|AC134448.4| Mus musculus BAC clone RP24-186G11 from 3, complete sequence Length = 160223 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 541 ttcttttcacgaggagcagcatat 564 ||||||||| |||||||||||||| Sbjct: 98862 ttcttttcaagaggagcagcatat 98839 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,071,548 Number of Sequences: 3902068 Number of extensions: 5071548 Number of successful extensions: 89804 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89614 Number of HSP's gapped (non-prelim): 186 length of query: 586 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 563 effective length of database: 17,143,297,704 effective search space: 9651676607352 effective search space used: 9651676607352 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
