| Clone Name | baal18m18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469368.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2349 Score = 630 bits (318), Expect = e-177 Identities = 458/505 (90%) Strand = Plus / Plus Query: 8 tttgctattatacaacactcatatcttgtggggttcttggtgtacatacttctcaatctt 67 |||||||| ||||| ||||| ||| |||| |||||||| ||||||||| || ||||| | Sbjct: 319 tttgctataatacagcactcgtattttgttgggttctttgtgtacatagttttcaattta 378 Query: 68 gccctcgtcttctcttctgtatacatagtcacacaatttgcaccagcagctgctggatct 127 |||||||||||||| |||||||||||||| ||| | || ||||||||||| ||||||||| Sbjct: 379 gccctcgtcttctcatctgtatacatagtaacaaacttcgcaccagcagcagctggatct 438 Query: 128 ggtatcccggagatcaaaggttacttaaatggagttgatacacatggaatcctccttttt 187 ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 439 ggtattccggagatcaaaggttacttaaatggagtggatacacatggaatcctccttttc 498 Query: 188 aggacattagttgggaagatttttgggagcatcggatcagttggaggtggattggctcta 247 |||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||| Sbjct: 499 aggacattagttgggaagatctttgggagcattggatcagttggaggaggtttggctcta 558 Query: 248 ggaaaagaaggtcctcttgttcacactggagcctgcattgcttctcttcttgggcaaggt 307 ||||||||||| ||||||||||| ||||| || ||||| ||||||||||| || || ||| Sbjct: 559 ggaaaagaagggcctcttgttcatactggggcatgcatcgcttctcttctgggacagggt 618 Query: 308 ggatcagcgaagtaccacttgaattctagatgggtacagatttttgaaagtgatcgagat 367 |||||||| || ||||| |||| |||||| ||||||| |||||||||||| || |||||| Sbjct: 619 ggatcagcaaaataccatttgagttctaggtgggtacggatttttgaaagcgaccgagat 678 Query: 368 cggcgagatcttgtgacatgtggatgtgcagctggagttgctgccgccttcagagctccg 427 |||||||| |||||||||||||||||||||||||| |||||||| || |||||||||||| Sbjct: 679 cggcgagaccttgtgacatgtggatgtgcagctggggttgctgcagcattcagagctccg 738 Query: 428 gttggtggggtactatttgctctggaggaagttacatcctggtggagaagccatcttatg 487 |||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| Sbjct: 739 gttggtggggtactatttgccctggaggaagttacatcctggtggcgaagtcatcttatg 798 Query: 488 tggagagnattctttacatctgctg 512 ||||||| ||||||||||||||||| Sbjct: 799 tggagagtattctttacatctgctg 823
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 167 bits (84), Expect = 4e-38 Identities = 135/152 (88%) Strand = Plus / Minus Query: 8 tttgctattatacaacactcatatcttgtggggttcttggtgtacatacttctcaatctt 67 |||||||| ||||| ||||| ||| |||| |||||||| ||||||||| || ||||| | Sbjct: 27578481 tttgctataatacagcactcgtattttgttgggttctttgtgtacatagttttcaattta 27578422 Query: 68 gccctcgtcttctcttctgtatacatagtcacacaatttgcaccagcagctgctggatct 127 |||||||||||||| |||||||||||||| ||| | || ||||||||||| ||||||||| Sbjct: 27578421 gccctcgtcttctcatctgtatacatagtaacaaacttcgcaccagcagcagctggatct 27578362 Query: 128 ggtatcccggagatcaaaggttacttaaatgg 159 ||||| |||||||||||||||||||||||||| Sbjct: 27578361 ggtattccggagatcaaaggttacttaaatgg 27578330 Score = 149 bits (75), Expect = 1e-32 Identities = 87/91 (95%) Strand = Plus / Minus Query: 380 gtgacatgtggatgtgcagctggagttgctgccgccttcagagctccggttggtggggta 439 ||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||| Sbjct: 27576232 gtgacatgtggatgtgcagctggggttgctgcagcattcagagctccggttggtggggta 27576173 Query: 440 ctatttgctctggaggaagttacatcctggt 470 |||||||| |||||||||||||||||||||| Sbjct: 27576172 ctatttgccctggaggaagttacatcctggt 27576142 Score = 115 bits (58), Expect = 1e-22 Identities = 85/94 (90%) Strand = Plus / Minus Query: 204 agatttttgggagcatcggatcagttggaggtggattggctctaggaaaagaaggtcctc 263 |||| ||||||||||| |||||||||||||| || |||||||||||||||||||| |||| Sbjct: 27578080 agatctttgggagcattggatcagttggaggaggtttggctctaggaaaagaagggcctc 27578021 Query: 264 ttgttcacactggagcctgcattgcttctcttct 297 ||||||| ||||| || ||||| ||||||||||| Sbjct: 27578020 ttgttcatactggggcatgcatcgcttctcttct 27577987 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 305 ggtggatcagcgaagtaccacttgaattctagatgggtacagatttttgaaagtgatcga 364 ||||||||||| || ||||| |||| |||||| ||||||| |||||||||||| || ||| Sbjct: 27577408 ggtggatcagcaaaataccatttgagttctaggtgggtacggatttttgaaagcgaccga 27577349 Query: 365 gatcggcgagatcttgt 381 ||||||||||| ||||| Sbjct: 27577348 gatcggcgagaccttgt 27577332 Score = 79.8 bits (40), Expect = 8e-12 Identities = 46/48 (95%) Strand = Plus / Minus Query: 158 ggagttgatacacatggaatcctcctttttaggacattagttgggaag 205 ||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 27578250 ggagtggatacacatggaatcctccttttcaggacattagttgggaag 27578203 Score = 67.9 bits (34), Expect = 3e-08 Identities = 42/45 (93%) Strand = Plus / Minus Query: 468 ggtggagaagccatcttatgtggagagnattctttacatctgctg 512 ||||| |||| |||||||||||||||| ||||||||||||||||| Sbjct: 27575367 ggtggcgaagtcatcttatgtggagagtattctttacatctgctg 27575323
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 167 bits (84), Expect = 4e-38 Identities = 135/152 (88%) Strand = Plus / Minus Query: 8 tttgctattatacaacactcatatcttgtggggttcttggtgtacatacttctcaatctt 67 |||||||| ||||| ||||| ||| |||| |||||||| ||||||||| || ||||| | Sbjct: 27669804 tttgctataatacagcactcgtattttgttgggttctttgtgtacatagttttcaattta 27669745 Query: 68 gccctcgtcttctcttctgtatacatagtcacacaatttgcaccagcagctgctggatct 127 |||||||||||||| |||||||||||||| ||| | || ||||||||||| ||||||||| Sbjct: 27669744 gccctcgtcttctcatctgtatacatagtaacaaacttcgcaccagcagcagctggatct 27669685 Query: 128 ggtatcccggagatcaaaggttacttaaatgg 159 ||||| |||||||||||||||||||||||||| Sbjct: 27669684 ggtattccggagatcaaaggttacttaaatgg 27669653 Score = 149 bits (75), Expect = 1e-32 Identities = 87/91 (95%) Strand = Plus / Minus Query: 380 gtgacatgtggatgtgcagctggagttgctgccgccttcagagctccggttggtggggta 439 ||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||| Sbjct: 27667555 gtgacatgtggatgtgcagctggggttgctgcagcattcagagctccggttggtggggta 27667496 Query: 440 ctatttgctctggaggaagttacatcctggt 470 |||||||| |||||||||||||||||||||| Sbjct: 27667495 ctatttgccctggaggaagttacatcctggt 27667465 Score = 115 bits (58), Expect = 1e-22 Identities = 85/94 (90%) Strand = Plus / Minus Query: 204 agatttttgggagcatcggatcagttggaggtggattggctctaggaaaagaaggtcctc 263 |||| ||||||||||| |||||||||||||| || |||||||||||||||||||| |||| Sbjct: 27669403 agatctttgggagcattggatcagttggaggaggtttggctctaggaaaagaagggcctc 27669344 Query: 264 ttgttcacactggagcctgcattgcttctcttct 297 ||||||| ||||| || ||||| ||||||||||| Sbjct: 27669343 ttgttcatactggggcatgcatcgcttctcttct 27669310 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 305 ggtggatcagcgaagtaccacttgaattctagatgggtacagatttttgaaagtgatcga 364 ||||||||||| || ||||| |||| |||||| ||||||| |||||||||||| || ||| Sbjct: 27668731 ggtggatcagcaaaataccatttgagttctaggtgggtacggatttttgaaagcgaccga 27668672 Query: 365 gatcggcgagatcttgt 381 ||||||||||| ||||| Sbjct: 27668671 gatcggcgagaccttgt 27668655 Score = 79.8 bits (40), Expect = 8e-12 Identities = 46/48 (95%) Strand = Plus / Minus Query: 158 ggagttgatacacatggaatcctcctttttaggacattagttgggaag 205 ||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 27669573 ggagtggatacacatggaatcctccttttcaggacattagttgggaag 27669526 Score = 67.9 bits (34), Expect = 3e-08 Identities = 42/45 (93%) Strand = Plus / Minus Query: 468 ggtggagaagccatcttatgtggagagnattctttacatctgctg 512 ||||| |||| |||||||||||||||| ||||||||||||||||| Sbjct: 27666690 ggtggcgaagtcatcttatgtggagagtattctttacatctgctg 27666646
>gb|AC123974.6| Oryza sativa chromosome 3 BAC OSJNBb0021P10 genomic sequence, complete sequence Length = 136982 Score = 167 bits (84), Expect = 4e-38 Identities = 135/152 (88%) Strand = Plus / Minus Query: 8 tttgctattatacaacactcatatcttgtggggttcttggtgtacatacttctcaatctt 67 |||||||| ||||| ||||| ||| |||| |||||||| ||||||||| || ||||| | Sbjct: 20178 tttgctataatacagcactcgtattttgttgggttctttgtgtacatagttttcaattta 20119 Query: 68 gccctcgtcttctcttctgtatacatagtcacacaatttgcaccagcagctgctggatct 127 |||||||||||||| |||||||||||||| ||| | || ||||||||||| ||||||||| Sbjct: 20118 gccctcgtcttctcatctgtatacatagtaacaaacttcgcaccagcagcagctggatct 20059 Query: 128 ggtatcccggagatcaaaggttacttaaatgg 159 ||||| |||||||||||||||||||||||||| Sbjct: 20058 ggtattccggagatcaaaggttacttaaatgg 20027 Score = 149 bits (75), Expect = 1e-32 Identities = 87/91 (95%) Strand = Plus / Minus Query: 380 gtgacatgtggatgtgcagctggagttgctgccgccttcagagctccggttggtggggta 439 ||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||| Sbjct: 17929 gtgacatgtggatgtgcagctggggttgctgcagcattcagagctccggttggtggggta 17870 Query: 440 ctatttgctctggaggaagttacatcctggt 470 |||||||| |||||||||||||||||||||| Sbjct: 17869 ctatttgccctggaggaagttacatcctggt 17839 Score = 115 bits (58), Expect = 1e-22 Identities = 85/94 (90%) Strand = Plus / Minus Query: 204 agatttttgggagcatcggatcagttggaggtggattggctctaggaaaagaaggtcctc 263 |||| ||||||||||| |||||||||||||| || |||||||||||||||||||| |||| Sbjct: 19777 agatctttgggagcattggatcagttggaggaggtttggctctaggaaaagaagggcctc 19718 Query: 264 ttgttcacactggagcctgcattgcttctcttct 297 ||||||| ||||| || ||||| ||||||||||| Sbjct: 19717 ttgttcatactggggcatgcatcgcttctcttct 19684 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 305 ggtggatcagcgaagtaccacttgaattctagatgggtacagatttttgaaagtgatcga 364 ||||||||||| || ||||| |||| |||||| ||||||| |||||||||||| || ||| Sbjct: 19105 ggtggatcagcaaaataccatttgagttctaggtgggtacggatttttgaaagcgaccga 19046 Query: 365 gatcggcgagatcttgt 381 ||||||||||| ||||| Sbjct: 19045 gatcggcgagaccttgt 19029 Score = 79.8 bits (40), Expect = 8e-12 Identities = 46/48 (95%) Strand = Plus / Minus Query: 158 ggagttgatacacatggaatcctcctttttaggacattagttgggaag 205 ||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 19947 ggagtggatacacatggaatcctccttttcaggacattagttgggaag 19900 Score = 67.9 bits (34), Expect = 3e-08 Identities = 42/45 (93%) Strand = Plus / Minus Query: 468 ggtggagaagccatcttatgtggagagnattctttacatctgctg 512 ||||| |||| |||||||||||||||| ||||||||||||||||| Sbjct: 17064 ggtggcgaagtcatcttatgtggagagtattctttacatctgctg 17020
>ref|NM_122525.2| Arabidopsis thaliana CLC-D; anion channel/ voltage-gated chloride channel AT5G26240 (CLC-D) mRNA, complete cds Length = 2861 Score = 153 bits (77), Expect = 7e-34 Identities = 239/293 (81%) Strand = Plus / Plus Query: 198 ttgggaagatttttgggagcatcggatcagttggaggtggattggctctaggaaaagaag 257 |||| ||||| ||||| ||||| || || ||||| ||||| || || | || ||||||| Sbjct: 616 ttggaaagatatttggaagcattggttctgttgggggtggcttagccttggggaaagaag 675 Query: 258 gtcctcttgttcacactggagcctgcattgcttctcttcttgggcaaggtggatcagcga 317 |||||||||| || || || ||||||||||| || | ||||| || |||||||| ||| Sbjct: 676 gtcctcttgtgcatacaggtgcctgcattgcatcgttgcttggtcagggtggatctacga 735 Query: 318 agtaccacttgaattctagatgggtacagatttttgaaagtgatcgagatcggcgagatc 377 | || || ||||||||||||||| || ||||| | |||||| |||||||||| |||| Sbjct: 736 aatatcatttgaattctagatggccgcaactttttaagagtgatagagatcggcgtgatc 795 Query: 378 ttgtgacatgtggatgtgcagctggagttgctgccgccttcagagctccggttggtgggg 437 |||| || |||||||||||||||||||||||||| ||||| ||||| || |||||||| | Sbjct: 796 ttgtcacttgtggatgtgcagctggagttgctgctgcctttagagccccagttggtggag 855 Query: 438 tactatttgctctggaggaagttacatcctggtggagaagccatcttatgtgg 490 | ||||||| | ||||| || ||||| ||||||||||| || ||||||||| Sbjct: 856 tgttatttgcattagaggaggtcacatcatggtggagaagtcaacttatgtgg 908
>emb|Z71450.1|ATCLCD A.thaliana mRNA for CLC-d chloride channel protein Length = 2861 Score = 153 bits (77), Expect = 7e-34 Identities = 239/293 (81%) Strand = Plus / Plus Query: 198 ttgggaagatttttgggagcatcggatcagttggaggtggattggctctaggaaaagaag 257 |||| ||||| ||||| ||||| || || ||||| ||||| || || | || ||||||| Sbjct: 616 ttggaaagatatttggaagcattggttctgttgggggtggcttagccttggggaaagaag 675 Query: 258 gtcctcttgttcacactggagcctgcattgcttctcttcttgggcaaggtggatcagcga 317 |||||||||| || || || ||||||||||| || | ||||| || |||||||| ||| Sbjct: 676 gtcctcttgtgcatacaggtgcctgcattgcatcgttgcttggtcagggtggatctacga 735 Query: 318 agtaccacttgaattctagatgggtacagatttttgaaagtgatcgagatcggcgagatc 377 | || || ||||||||||||||| || ||||| | |||||| |||||||||| |||| Sbjct: 736 aatatcatttgaattctagatggccgcaactttttaagagtgatagagatcggcgtgatc 795 Query: 378 ttgtgacatgtggatgtgcagctggagttgctgccgccttcagagctccggttggtgggg 437 |||| || |||||||||||||||||||||||||| ||||| ||||| || |||||||| | Sbjct: 796 ttgtcacttgtggatgtgcagctggagttgctgctgcctttagagccccagttggtggag 855 Query: 438 tactatttgctctggaggaagttacatcctggtggagaagccatcttatgtgg 490 | ||||||| | ||||| || ||||| ||||||||||| || ||||||||| Sbjct: 856 tgttatttgcattagaggaggtcacatcatggtggagaagtcaacttatgtgg 908
>dbj|AK117364.1| Arabidopsis thaliana At5g26240 mRNA for putative CLC-d chloride channel protein, complete cds, clone: RAFL16-93-G11 Length = 2771 Score = 151 bits (76), Expect = 3e-33 Identities = 199/240 (82%) Strand = Plus / Plus Query: 251 aaagaaggtcctcttgttcacactggagcctgcattgcttctcttcttgggcaaggtgga 310 ||||||||||||||||| || || || ||||||||||| || | ||||| || |||||| Sbjct: 653 aaagaaggtcctcttgtgcatacaggtgcctgcattgcatcgttgcttggtcagggtgga 712 Query: 311 tcagcgaagtaccacttgaattctagatgggtacagatttttgaaagtgatcgagatcgg 370 || |||| || || ||||||||||||||| || ||||| | |||||| |||||||| Sbjct: 713 tctacgaaatatcatttgaattctagatggccgcaactttttaagagtgatagagatcgg 772 Query: 371 cgagatcttgtgacatgtggatgtgcagctggagttgctgccgccttcagagctccggtt 430 || |||||||| || |||||||||||||||||||||||||| ||||| ||||| || ||| Sbjct: 773 cgtgatcttgtcacttgtggatgtgcagctggagttgctgctgcctttagagccccagtt 832 Query: 431 ggtggggtactatttgctctggaggaagttacatcctggtggagaagccatcttatgtgg 490 ||||| || ||||||| | ||||| || ||||| ||||||||||| || ||||||||| Sbjct: 833 ggtggagtgttatttgcattagaggaggtcacatcatggtggagaagtcaacttatgtgg 892
>emb|CR932964.2| Medicago truncatula chromosome 5 clone mte1-60l18, COMPLETE SEQUENCE Length = 93777 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 96 tcacacaatttgcaccagcagctgctggatctggtatcccggagatcaaaggttacttaa 155 ||||||||||| ||||||||||||||||||||||||| || || ||||| |||||||||| Sbjct: 77887 tcacacaattttcaccagcagctgctggatctggtattcctgaaatcaagggttacttaa 77946 Query: 156 a 156 | Sbjct: 77947 a 77947 Score = 65.9 bits (33), Expect = 1e-07 Identities = 72/85 (84%) Strand = Plus / Plus Query: 386 tgtggatgtgcagctggagttgctgccgccttcagagctccggttggtggggtactattt 445 ||||| |||||||||||||||||||| || || |||||||| |||||||| ||| | ||| Sbjct: 80050 tgtgggtgtgcagctggagttgctgctgcatttagagctccagttggtggcgtattgttt 80109 Query: 446 gctctggaggaagttacatcctggt 470 || |||| || |||||||| |||| Sbjct: 80110 gcattggaagaggttacatcgtggt 80134
>gb|AC005965.1| Arabidopsis thaliana BAC T19G15, from chromosome V near 60.5 cM, complete sequence Length = 77036 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 386 tgtggatgtgcagctggagttgctgccgccttcagagctccggttggtgg 435 |||||||||||||||||||||||||| ||||| ||||| || |||||||| Sbjct: 46318 tgtggatgtgcagctggagttgctgctgcctttagagccccagttggtgg 46367 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Plus Query: 251 aaagaaggtcctcttgttcacactggagcctgcattgc 288 ||||||||||||||||| || || || ||||||||||| Sbjct: 45992 aaagaaggtcctcttgtgcatacaggtgcctgcattgc 46029 Score = 42.1 bits (21), Expect = 1.8 Identities = 63/77 (81%) Strand = Plus / Plus Query: 305 ggtggatcagcgaagtaccacttgaattctagatgggtacagatttttgaaagtgatcga 364 |||||||| |||| || || ||||||||||||||| || ||||| | |||||| || Sbjct: 46125 ggtggatctacgaaatatcatttgaattctagatggccgcaactttttaagagtgataga 46184 Query: 365 gatcggcgagatcttgt 381 |||||||| |||||||| Sbjct: 46185 gatcggcgtgatcttgt 46201
>gb|AF077407.1|F9D12 Arabidopsis thaliana BAC F9D12 Length = 112253 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 386 tgtggatgtgcagctggagttgctgccgccttcagagctccggttggtgg 435 |||||||||||||||||||||||||| ||||| ||||| || |||||||| Sbjct: 35069 tgtggatgtgcagctggagttgctgctgcctttagagccccagttggtgg 35118 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Plus Query: 251 aaagaaggtcctcttgttcacactggagcctgcattgc 288 ||||||||||||||||| || || || ||||||||||| Sbjct: 34743 aaagaaggtcctcttgtgcatacaggtgcctgcattgc 34780 Score = 42.1 bits (21), Expect = 1.8 Identities = 63/77 (81%) Strand = Plus / Plus Query: 305 ggtggatcagcgaagtaccacttgaattctagatgggtacagatttttgaaagtgatcga 364 |||||||| |||| || || ||||||||||||||| || ||||| | |||||| || Sbjct: 34876 ggtggatctacgaaatatcatttgaattctagatggccgcaactttttaagagtgataga 34935 Query: 365 gatcggcgagatcttgt 381 |||||||| |||||||| Sbjct: 34936 gatcggcgtgatcttgt 34952
>ref|XM_466225.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2928 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 394 tgcagctggagttgctgccgccttcagagctccggttggtggggtactatttgctctgga 453 |||||||||||| || || |||||| | ||||| |||||||| || ||||||||||| || Sbjct: 1070 tgcagctggagtggcagctgccttccgtgctcctgttggtggtgtcctatttgctcttga 1129 Query: 454 ggaag 458 ||||| Sbjct: 1130 ggaag 1134
>dbj|AB069968.1| Oryza sativa (japonica cultivar-group) OsCLC-2 gene for chloride channel, paritial cds Length = 6803 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 394 tgcagctggagttgctgccgccttcagagctccggttggtggggtactatttgctctgga 453 |||||||||||| || || |||||| | ||||| |||||||| || ||||||||||| || Sbjct: 3377 tgcagctggagtggcagctgccttccgtgctcctgttggtggtgtcctatttgctcttga 3436 Query: 454 ggaag 458 ||||| Sbjct: 3437 ggaag 3441
>dbj|AB069967.1| Oryza sativa (japonica cultivar-group) OsCLC-2 mRNA for chloride channel, partial cds Length = 2539 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 394 tgcagctggagttgctgccgccttcagagctccggttggtggggtactatttgctctgga 453 |||||||||||| || || |||||| | ||||| |||||||| || ||||||||||| || Sbjct: 681 tgcagctggagtggcagctgccttccgtgctcctgttggtggtgtcctatttgctcttga 740 Query: 454 ggaag 458 ||||| Sbjct: 741 ggaag 745
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 394 tgcagctggagttgctgccgccttcagagctccggttggtggggtactatttgctctgga 453 |||||||||||| || || |||||| | ||||| |||||||| || ||||||||||| || Sbjct: 21173117 tgcagctggagtggcagctgccttccgtgctcctgttggtggtgtcctatttgctcttga 21173058 Query: 454 ggaag 458 ||||| Sbjct: 21173057 ggaag 21173053
>dbj|AP005808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0038F20 Length = 129595 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 394 tgcagctggagttgctgccgccttcagagctccggttggtggggtactatttgctctgga 453 |||||||||||| || || |||||| | ||||| |||||||| || ||||||||||| || Sbjct: 79833 tgcagctggagtggcagctgccttccgtgctcctgttggtggtgtcctatttgctcttga 79774 Query: 454 ggaag 458 ||||| Sbjct: 79773 ggaag 79769
>dbj|AK069669.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028O13, full insert sequence Length = 2927 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 394 tgcagctggagttgctgccgccttcagagctccggttggtggggtactatttgctctgga 453 |||||||||||| || || |||||| | ||||| |||||||| || ||||||||||| || Sbjct: 1070 tgcagctggagtggcagctgccttccgtgctcctgttggtggtgtcctatttgctcttga 1129 Query: 454 ggaag 458 ||||| Sbjct: 1130 ggaag 1134
>dbj|AK066353.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063B06, full insert sequence Length = 3084 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 394 tgcagctggagttgctgccgccttcagagctccggttggtggggtactatttgctctgga 453 |||||||||||| || || |||||| | ||||| |||||||| || ||||||||||| || Sbjct: 1219 tgcagctggagtggcagctgccttccgtgctcctgttggtggtgtcctatttgctcttga 1278 Query: 454 ggaag 458 ||||| Sbjct: 1279 ggaag 1283
>dbj|AB069966.1| Oryza sativa (japonica cultivar-group) OsCLC-1 mRNA for chloride channel, complete cds Length = 2669 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 107 gcaccagcagctgctggatctggtat 132 |||||||| ||||||||||||||||| Sbjct: 610 gcaccagctgctgctggatctggtat 635 Score = 40.1 bits (20), Expect = 7.0 Identities = 100/127 (78%) Strand = Plus / Plus Query: 386 tgtggatgtgcagctggagttgctgccgccttcagagctccggttggtggggtactattt 445 ||||||| |||||||||||||| || || || | || || |||||||| || || ||| Sbjct: 889 tgtggatcagcagctggagttgcagcagcatttcgtgcaccagttggtggtgtgctcttt 948 Query: 446 gctctggaggaagttacatcctggtggagaagccatcttatgtggagagnattctttaca 505 ||||| ||||||| |||| |||||| |||| |||| | |||||| |||||||||| Sbjct: 949 gctcttgaggaagcagcatcatggtggcgaagtgctcttctatggagaacattctttaca 1008 Query: 506 tctgctg 512 |||||| Sbjct: 1009 actgctg 1015
>gb|AC011632.7| Homo sapiens chromosome 8, clone RP11-3N13, complete sequence Length = 175743 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 334 tagatgggtacagatttttgaa 355 |||||||||||||||||||||| Sbjct: 100800 tagatgggtacagatttttgaa 100821
>gb|AC084336.6| Homo sapiens chromosome 8, clone RP11-625F15, complete sequence Length = 156235 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 334 tagatgggtacagatttttgaa 355 |||||||||||||||||||||| Sbjct: 112630 tagatgggtacagatttttgaa 112609
>dbj|AK066027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045I23, full insert sequence Length = 2887 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 107 gcaccagcagctgctggatctggtat 132 |||||||| ||||||||||||||||| Sbjct: 815 gcaccagctgctgctggatctggtat 840 Score = 40.1 bits (20), Expect = 7.0 Identities = 100/127 (78%) Strand = Plus / Plus Query: 386 tgtggatgtgcagctggagttgctgccgccttcagagctccggttggtggggtactattt 445 ||||||| |||||||||||||| || || || | || || |||||||| || || ||| Sbjct: 1094 tgtggatcagcagctggagttgcagcagcatttcgtgcaccagttggtggtgtgctcttt 1153 Query: 446 gctctggaggaagttacatcctggtggagaagccatcttatgtggagagnattctttaca 505 ||||| ||||||| |||| |||||| |||| |||| | |||||| |||||||||| Sbjct: 1154 gctcttgaggaagcagcatcatggtggcgaagtgctcttctatggagaacattctttaca 1213 Query: 506 tctgctg 512 |||||| Sbjct: 1214 actgctg 1220
>emb|BX284698.6| Human DNA sequence from clone RP11-41M24 on chromosome 1, complete sequence Length = 84876 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 ccctcgtcttctcttctgtat 89 ||||||||||||||||||||| Sbjct: 66136 ccctcgtcttctcttctgtat 66156
>ref|XM_779964.1| PREDICTED: Strongylocentrotus purpuratus similar to Chloride channel protein 6 (ClC-6) (LOC579870), mRNA Length = 2226 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 116 gctgctggatctggtatcccggagatcaa 144 |||| ||||||||||||||| |||||||| Sbjct: 211 gctggtggatctggtatccccgagatcaa 239
>emb|BX037113.1|CNS090ST Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA9BG05 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 962 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 106 tgcaccagcagctgctggatc 126 ||||||||||||||||||||| Sbjct: 802 tgcaccagcagctgctggatc 822
>emb|BX037112.1|CNS090SS Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA9BG05 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 985 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 106 tgcaccagcagctgctggatc 126 ||||||||||||||||||||| Sbjct: 463 tgcaccagcagctgctggatc 443
>emb|BX006780.1|CNS08DE8 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA11BF10 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1037 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 106 tgcaccagcagctgctggatc 126 ||||||||||||||||||||| Sbjct: 812 tgcaccagcagctgctggatc 832
>emb|BX006779.1|CNS08DE7 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA11BF10 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 812 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 106 tgcaccagcagctgctggatc 126 ||||||||||||||||||||| Sbjct: 469 tgcaccagcagctgctggatc 449
>gb|AC151907.5| Mus musculus BAC clone RP23-163E23 from chromosome 15, complete sequence Length = 197165 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 tgctattatacaacactcata 30 ||||||||||||||||||||| Sbjct: 106418 tgctattatacaacactcata 106438
>gb|AC004655.1| Homo sapiens Xp22-140-141 BAC GSHB-128G5 (Genome Systems Human BAC library) complete sequence Length = 134929 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 266 gttcacactggagcctgcatt 286 ||||||||||||||||||||| Sbjct: 20900 gttcacactggagcctgcatt 20880
>gb|AC079168.22| Homo sapiens Xp BAC RP11-753E22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 151012 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 266 gttcacactggagcctgcatt 286 ||||||||||||||||||||| Sbjct: 68061 gttcacactggagcctgcatt 68081
>gb|AC025755.5| Homo sapiens chromosome 5 clone CTD-2045M21, complete sequence Length = 111634 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 441 tatttgctctggaggaagtta 461 ||||||||||||||||||||| Sbjct: 64321 tatttgctctggaggaagtta 64301
>gb|AC099518.3| Homo sapiens chromosome 16 clone RP11-626G11, complete sequence Length = 216264 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ttctgtatacatagtcacaca 102 ||||||||||||||||||||| Sbjct: 189340 ttctgtatacatagtcacaca 189320
>gb|AC010494.4|AC010494 Homo sapiens chromosome 16 clone CTD-2349B8, complete sequence Length = 105448 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 ttctgtatacatagtcacaca 102 ||||||||||||||||||||| Sbjct: 96902 ttctgtatacatagtcacaca 96922
>ref|XM_311149.2| Anopheles gambiae str. PEST ENSANGP00000020447 (ENSANGG00000017958), partial mRNA Length = 1723 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 106 tgcaccagcagctgctggatc 126 ||||||||||||||||||||| Sbjct: 74 tgcaccagcagctgctggatc 54
>gb|AC135113.4| Mus musculus BAC clone RP24-63N7 from 15, complete sequence Length = 173656 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 tgctattatacaacactcata 30 ||||||||||||||||||||| Sbjct: 24476 tgctattatacaacactcata 24456
>gb|AC159614.7| Mus musculus chromosome 1, clone RP24-305O23, complete sequence Length = 156924 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 atcttgccctcgtcttctct 82 |||||||||||||||||||| Sbjct: 36604 atcttgccctcgtcttctct 36585
>emb|AJ251914.1|SSC251914 Sus scrofa MHC class I SLA genes, haplotype H01, clone BAC 493A6 Length = 158063 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 tgcagctggagttgctgccg 413 |||||||||||||||||||| Sbjct: 120274 tgcagctggagttgctgccg 120255
>ref|XM_386657.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG06481.1) partial mRNA Length = 1866 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 taaatggagttgatacacat 172 |||||||||||||||||||| Sbjct: 1284 taaatggagttgatacacat 1265
>gb|AY296114.1| Ixodes scapularis chloride channel mRNA, partial cds Length = 697 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 tggatctggtatcccggagatcaa 144 ||||||||| |||||||||||||| Sbjct: 252 tggatctggaatcccggagatcaa 275
>emb|AL353896.12| Human DNA sequence from clone RP11-390J12 on chromosome 13, complete sequence Length = 89264 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 gccctcgtcttctcttctgt 87 |||||||||||||||||||| Sbjct: 77542 gccctcgtcttctcttctgt 77561
>emb|AL161793.9| Human DNA sequence from clone RP11-23I7 on chromosome 1q32.1-32.3 Contains the 5' end of the LRRN5 gene for leucine rich repeat neuronal 5 and a novel gene, complete sequence Length = 162345 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 ttcacactggagcctgcatt 286 |||||||||||||||||||| Sbjct: 64993 ttcacactggagcctgcatt 64974
>emb|AL391710.1|ATT6I14 Arabidopsis thaliana DNA chromosome 5, BAC clone T6I14 (ESSA project) Length = 90472 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 gggttcttggtgtacatacttctc 61 ||||||||||||||||| |||||| Sbjct: 15667 gggttcttggtgtacattcttctc 15644
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 ttcttggtgtacatacttct 60 |||||||||||||||||||| Sbjct: 3021523 ttcttggtgtacatacttct 3021542
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 caccagcagctgctggatct 127 |||||||||||||||||||| Sbjct: 3310989 caccagcagctgctggatct 3311008 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,978,830 Number of Sequences: 3902068 Number of extensions: 4978830 Number of successful extensions: 98530 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98243 Number of HSP's gapped (non-prelim): 284 length of query: 515 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 492 effective length of database: 17,143,297,704 effective search space: 8434502470368 effective search space used: 8434502470368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)