ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal18l10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_187458.1| Oryza sativa (japonica cultivar-group), predic... 66 7e-08
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 66 7e-08
3gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome... 66 7e-08
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 66 7e-08
5dbj|AK065578.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 7e-08
6gb|AY105790.1| Zea mays PCO079761 mRNA sequence 50 0.004
7gb|BT018387.1| Zea mays clone EL01N0313G10.d mRNA sequence 46 0.061
8gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 3.8
9gb|AC115360.6| Mus musculus BAC clone RP23-191N22 from chromosom... 40 3.8
10dbj|AK031666.1| Mus musculus 13 days embryo male testis cDNA, RI... 40 3.8
11gb|AC101774.6| Mus musculus chromosome 19, clone RP24-113J17, co... 40 3.8

>ref|NM_187458.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 975

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                       
Query: 213 accgttcaagatccccatacagttacagaaggcggaggtcatgctcccatgaccgttatg 272
           ||||||||||||| |||||| ||||||||||   ||||||||| ||| |||||| || ||
Sbjct: 659 accgttcaagatctccataccgttacagaagagagaggtcatgttcctatgaccattctg 718

                        
Query: 273 tttcagcatacta 285
           ||||| |||||||
Sbjct: 719 tttcaccatacta 731



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 65/78 (83%)
 Strand = Plus / Plus

                                                                       
Query: 32  agatcatactccccctatggaaggaggccatcctactccccctatgaaaggaggccatcc 91
           |||||||||||||||||||  ||| |   ||||||||| ||  |||||||||| |  |||
Sbjct: 487 agatcatactccccctatgagaggcgtagatcctactctccacatgaaaggagacagtcc 546

                             
Query: 92  tactctccctatggcaga 109
           |||||||| |||||||||
Sbjct: 547 tactctccgtatggcaga 564



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                           
Query: 213     accgttcaagatccccatacagttacagaaggcggaggtcatgctcccatgaccgttatg 272
               ||||||||||||| |||||| ||||||||||   ||||||||| ||| |||||| || ||
Sbjct: 8740436 accgttcaagatctccataccgttacagaagagagaggtcatgttcctatgaccattctg 8740377

                            
Query: 273     tttcagcatacta 285
               ||||| |||||||
Sbjct: 8740376 tttcaccatacta 8740364



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                           
Query: 32      agatcatactccccctatggaaggaggccatcctactccccctatgaaaggaggccatcc 91
               |||||||||||||||||||  ||| |   ||||||||| ||  |||||||||| |  |||
Sbjct: 8740608 agatcatactccccctatgagaggcgtagatcctactctccacatgaaaggagacagtcc 8740549

                                 
Query: 92      tactctccctatggcaga 109
               |||||||| |||||||||
Sbjct: 8740548 tactctccgtatggcaga 8740531



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>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02,
             complete sequence
          Length = 115270

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                         
Query: 213   accgttcaagatccccatacagttacagaaggcggaggtcatgctcccatgaccgttatg 272
             ||||||||||||| |||||| ||||||||||   ||||||||| ||| |||||| || ||
Sbjct: 84087 accgttcaagatctccataccgttacagaagagagaggtcatgttcctatgaccattctg 84028

                          
Query: 273   tttcagcatacta 285
             ||||| |||||||
Sbjct: 84027 tttcaccatacta 84015



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                         
Query: 32    agatcatactccccctatggaaggaggccatcctactccccctatgaaaggaggccatcc 91
             |||||||||||||||||||  ||| |   ||||||||| ||  |||||||||| |  |||
Sbjct: 84259 agatcatactccccctatgagaggcgtagatcctactctccacatgaaaggagacagtcc 84200

                               
Query: 92    tactctccctatggcaga 109
             |||||||| |||||||||
Sbjct: 84199 tactctccgtatggcaga 84182



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                           
Query: 213     accgttcaagatccccatacagttacagaaggcggaggtcatgctcccatgaccgttatg 272
               ||||||||||||| |||||| ||||||||||   ||||||||| ||| |||||| || ||
Sbjct: 8738271 accgttcaagatctccataccgttacagaagagagaggtcatgttcctatgaccattctg 8738212

                            
Query: 273     tttcagcatacta 285
               ||||| |||||||
Sbjct: 8738211 tttcaccatacta 8738199



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                           
Query: 32      agatcatactccccctatggaaggaggccatcctactccccctatgaaaggaggccatcc 91
               |||||||||||||||||||  ||| |   ||||||||| ||  |||||||||| |  |||
Sbjct: 8738443 agatcatactccccctatgagaggcgtagatcctactctccacatgaaaggagacagtcc 8738384

                                 
Query: 92      tactctccctatggcaga 109
               |||||||| |||||||||
Sbjct: 8738383 tactctccgtatggcaga 8738366



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>dbj|AK065578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026M08, full
           insert sequence
          Length = 1438

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                       
Query: 213 accgttcaagatccccatacagttacagaaggcggaggtcatgctcccatgaccgttatg 272
           ||||||||||||| |||||| ||||||||||   ||||||||| ||| |||||| || ||
Sbjct: 918 accgttcaagatctccataccgttacagaagagagaggtcatgttcctatgaccattctg 977

                        
Query: 273 tttcagcatacta 285
           ||||| |||||||
Sbjct: 978 tttcaccatacta 990



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 65/78 (83%)
 Strand = Plus / Plus

                                                                       
Query: 32  agatcatactccccctatggaaggaggccatcctactccccctatgaaaggaggccatcc 91
           |||||||||||||||||||  ||| |   ||||||||| ||  |||||||||| |  |||
Sbjct: 746 agatcatactccccctatgagaggcgtagatcctactctccacatgaaaggagacagtcc 805

                             
Query: 92  tactctccctatggcaga 109
           |||||||| |||||||||
Sbjct: 806 tactctccgtatggcaga 823



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>gb|AY105790.1| Zea mays PCO079761 mRNA sequence
          Length = 1402

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 92  tactctccctatggcagaaggagatcatactctcctt 128
           |||||||| |||| ||||||| |||||||||||||||
Sbjct: 826 tactctccatatgacagaaggcgatcatactctcctt 862



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>gb|BT018387.1| Zea mays clone EL01N0313G10.d mRNA sequence
          Length = 1493

 Score = 46.1 bits (23), Expect = 0.061
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 92  tactctccctatggcagaaggagatcatactctcc 126
           |||||||| |||| ||||||| |||||||||||||
Sbjct: 907 tactctccatatgacagaaggcgatcatactctcc 941



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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    ccgacaggtcggagtctccc 148
              ||||||||||||||||||||
Sbjct: 754222 ccgacaggtcggagtctccc 754241



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>gb|AC115360.6| Mus musculus BAC clone RP23-191N22 from chromosome 19, complete sequence
          Length = 217325

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     atcctactccccctatgaaa 80
              ||||||||||||||||||||
Sbjct: 149635 atcctactccccctatgaaa 149654



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>dbj|AK031666.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030476O14 product:similar to
            MYOFERLIN (FER-1 LIKE PROTEIN 3) [Homo sapiens], full
            insert sequence
          Length = 3927

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 61   atcctactccccctatgaaa 80
            ||||||||||||||||||||
Sbjct: 3832 atcctactccccctatgaaa 3813



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>gb|AC101774.6| Mus musculus chromosome 19, clone RP24-113J17, complete sequence
          Length = 209547

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     atcctactccccctatgaaa 80
              ||||||||||||||||||||
Sbjct: 150320 atcctactccccctatgaaa 150301


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,457,638
Number of Sequences: 3902068
Number of extensions: 1457638
Number of successful extensions: 24956
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24902
Number of HSP's gapped (non-prelim): 44
length of query: 288
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 266
effective length of database: 17,147,199,772
effective search space: 4561155139352
effective search space used: 4561155139352
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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