>AROC_BARHE (Q6G4D4) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 366

 Score = 32.3 bits (72), Expect = 0.37
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 148 LSCATNPSSPGITLVSQAVTSYLNRPRATLSSHCARRREL 29
           L C  +   PGIT     + SYLN+ +   S +  +RREL
Sbjct: 23  LGCVIDGCPPGITFTLSDIQSYLNKRKPGQSKYTTQRREL 62

>AROC_BRUSU (P63608) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 364

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 148 LSCATNPSSPGITLVSQAVTSYLNRPRATLSSHCARRRE 32
           L C  +   PGIT     + S+L++ +   S +  +RRE
Sbjct: 23  LGCVVDGCPPGITFTEAEIQSFLDKRKPGQSKYTTQRRE 61

>AROC_BRUME (P63607) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 364

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 148 LSCATNPSSPGITLVSQAVTSYLNRPRATLSSHCARRRE 32
           L C  +   PGIT     + S+L++ +   S +  +RRE
Sbjct: 23  LGCVVDGCPPGITFTEAEIQSFLDKRKPGQSKYTTQRRE 61

>BBS5_BRARE (Q7ZWB7) Bardet-Biedl syndrome 5 protein homolog|
          Length = 342

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 33  SLLLAQWEDRVARGLFRYDVTACETKVIPGE 125
           S+L A WEDR  R    +D+TA + K  PGE
Sbjct: 3   SVLDALWEDRDVR----FDITAQQMKTRPGE 29

>SYNPO_RAT (Q9Z327) Synaptopodin|
          Length = 931

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 133 NPSSPGITLVSQAVTSYLNRPRATLSSH 50
           NPSSP  TL + A  S+ N+P A ++ +
Sbjct: 312 NPSSPNATLTTAASNSHHNQPTADVNQN 339


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,596,790
Number of Sequences: 219361
Number of extensions: 278254
Number of successful extensions: 811
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 80,573,946
effective HSP length: 25
effective length of database: 75,089,921
effective search space used: 1802158104
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)