ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal18k11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY596553.1| Saccharum officinarum clone SCUTLR1058C02, comple... 76 3e-11
2gb|AY105327.1| Zea mays PCO147247 mRNA sequence 68 8e-09
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 62 5e-07
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 62 5e-07
5emb|AL928749.4|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa... 62 5e-07
6dbj|AK071188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.002
7gb|AY489190.1| Capsicum annuum putative At4g26850-like protein ... 44 0.12
8gb|AC149580.19| Medicago truncatula clone mth2-123f14, complete ... 40 1.8
9emb|CR354563.13| Zebrafish DNA sequence from clone DKEY-210I1 in... 40 1.8
10gb|AC120875.12| Mus musculus chromosome 1, clone RP23-317M5, com... 38 7.2
11gb|AC185523.2| Pan troglodytes chromosome X clone PTB-124O20 map... 38 7.2
12ref|XM_979952.1| PREDICTED: Mus musculus calmodulin regulated sp... 38 7.2
13ref|XM_924051.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 7.2
14ref|XM_924058.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 7.2
15ref|XM_924052.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 7.2
16ref|XM_924054.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 7.2
17ref|XM_924045.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 7.2
18ref|XM_916022.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 7.2
19ref|XM_899101.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 7.2
20ref|XM_899121.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 7.2
21ref|XM_899106.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 7.2
22ref|XM_899116.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 7.2
23ref|XM_899089.2| PREDICTED: Mus musculus calmodulin regulated sp... 38 7.2
24ref|XM_129477.9| PREDICTED: Mus musculus calmodulin regulated sp... 38 7.2
25gb|AC137877.6| Mus musculus chromosome 10, clone RP23-72A1, comp... 38 7.2
26gb|AC166654.1| Mus musculus BAC clone RP23-426B21 from chromosom... 38 7.2
27emb|AL139331.19| Human DNA sequence from clone RP11-328M4 on chr... 38 7.2
28gb|AC021698.12| Homo sapiens chromosome 11, clone RP11-430L3, co... 38 7.2
29dbj|AK137176.1| Mus musculus adult male urinary bladder cDNA, RI... 38 7.2
30gb|AC079064.6| Homo sapiens chromosome 11, clone RP11-485O14, co... 38 7.2
31dbj|AK028542.1| Mus musculus 0 day neonate skin cDNA, RIKEN full... 38 7.2
32gb|AC087318.33| Homo sapiens 12 BAC RP11-73M14 (Roswell Park Can... 38 7.2
33gb|AC004148.1|AC004148 Homo sapiens chromosome 17, clone HCIT524... 38 7.2
34gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone ... 38 7.2
35emb|AL590873.17| Mouse DNA sequence from clone RP23-217I3 on chr... 38 7.2

>gb|AY596553.1| Saccharum officinarum clone SCUTLR1058C02, complete sequence
          Length = 1732

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 80/94 (85%)
 Strand = Plus / Plus

                                                                       
Query: 49  agtgggaggacagggtagcccgaggcctattcagatatgacgtaacagcctgcgagacca 108
           |||||||||||||| | ||||||||| ||||| | || || || || ||||| |||||||
Sbjct: 374 agtgggaggacaggatggcccgaggcttattccgctacgatgtcactgcctgtgagacca 433

                                             
Query: 109 aggtgattcctggcgagcttgggtttgttgcaca 142
           |||| || |||||| | |||||||||||||||||
Sbjct: 434 aggtcatccctggcaaccttgggtttgttgcaca 467



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>gb|AY105327.1| Zea mays PCO147247 mRNA sequence
          Length = 1954

 Score = 67.9 bits (34), Expect = 8e-09
 Identities = 79/94 (84%)
 Strand = Plus / Plus

                                                                       
Query: 49  agtgggaggacagggtagcccgaggcctattcagatatgacgtaacagcctgcgagacca 108
           |||||||||||||| |  | |||||| ||||| | || || || || ||||| |||||||
Sbjct: 632 agtgggaggacaggatgactcgaggcttattccgctacgatgtcactgcctgtgagacca 691

                                             
Query: 109 aggtgattcctggcgagcttgggtttgttgcaca 142
           |||| ||||||||| | |||||||||||||||||
Sbjct: 692 aggtcattcctggcaaccttgggtttgttgcaca 725



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 61.9 bits (31), Expect = 5e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                           
Query: 48      cagtgggaggacagggtagcccgaggcctattcagatatgacgtaacagcctgcgagacc 107
               |||||||| |||||| | ||||||||  | ||| ||||||| || || ||||| ||||||
Sbjct: 4534249 cagtgggaagacaggatggcccgaggtttgttccgatatgatgtcactgcctgtgagacc 4534190

                                                  
Query: 108     aaggtgattcctggcgagcttgggtttgttgcaca 142
               ||||| || || ||| | |||||||||||||||||
Sbjct: 4534189 aaggttatcccaggcaaccttgggtttgttgcaca 4534155



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 61.9 bits (31), Expect = 5e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                           
Query: 48      cagtgggaggacagggtagcccgaggcctattcagatatgacgtaacagcctgcgagacc 107
               |||||||| |||||| | ||||||||  | ||| ||||||| || || ||||| ||||||
Sbjct: 4534230 cagtgggaagacaggatggcccgaggtttgttccgatatgatgtcactgcctgtgagacc 4534171

                                                  
Query: 108     aaggtgattcctggcgagcttgggtttgttgcaca 142
               ||||| || || ||| | |||||||||||||||||
Sbjct: 4534170 aaggttatcccaggcaaccttgggtttgttgcaca 4534136



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>emb|AL928749.4|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa0002O20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 129155

 Score = 61.9 bits (31), Expect = 5e-07
 Identities = 79/95 (83%)
 Strand = Plus / Plus

                                                                         
Query: 48    cagtgggaggacagggtagcccgaggcctattcagatatgacgtaacagcctgcgagacc 107
             |||||||| |||||| | ||||||||  | ||| ||||||| || || ||||| ||||||
Sbjct: 70529 cagtgggaagacaggatggcccgaggtttgttccgatatgatgtcactgcctgtgagacc 70588

                                                
Query: 108   aaggtgattcctggcgagcttgggtttgttgcaca 142
             ||||| || || ||| | |||||||||||||||||
Sbjct: 70589 aaggttatcccaggcaaccttgggtttgttgcaca 70623



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>dbj|AK071188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086M14, full
           insert sequence
          Length = 2088

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                       
Query: 82  gatatgacgtaacagcctgcgagaccaaggtgattcctggcgagcttgggtttgttgcac 141
           ||||||| || || ||||| ||||||||||| || || ||| | ||||||||||||||||
Sbjct: 704 gatatgatgtcactgcctgtgagaccaaggttatcccaggcaaccttgggtttgttgcac 763

            
Query: 142 a 142
           |
Sbjct: 764 a 764



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>gb|AY489190.1| Capsicum annuum putative At4g26850-like protein  mRNA, complete
           sequence
          Length = 589

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 96  gcctgcgagaccaaggtgattcctgg 121
           |||||||| |||||||||||||||||
Sbjct: 399 gcctgcgaaaccaaggtgattcctgg 424



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>gb|AC149580.19| Medicago truncatula clone mth2-123f14, complete sequence
          Length = 123565

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 15    actgagttcttcctcaattctctc 38
             |||||||| |||||||||||||||
Sbjct: 79670 actgagtttttcctcaattctctc 79693



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>emb|CR354563.13| Zebrafish DNA sequence from clone DKEY-210I1 in linkage group 7,
             complete sequence
          Length = 147943

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     gagctccctactgagttctt 25
             ||||||||||||||||||||
Sbjct: 60496 gagctccctactgagttctt 60515



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>gb|AC120875.12| Mus musculus chromosome 1, clone RP23-317M5, complete sequence
          Length = 195159

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 22    tcttcctcaattctctcctcctc 44
             ||||||||||| |||||||||||
Sbjct: 92681 tcttcctcaatgctctcctcctc 92703



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>gb|AC185523.2| Pan troglodytes chromosome X clone PTB-124O20 map human ortholog p11.3,
              complete sequence
          Length = 209530

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 129    gggtttgttgcacagctta 147
              |||||||||||||||||||
Sbjct: 102763 gggtttgttgcacagctta 102781



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>ref|XM_979952.1| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1 (Camsap1l1), mRNA
          Length = 7688

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 22   tcttcctcaattctctcctcctc 44
            ||||||||||| |||||||||||
Sbjct: 2004 tcttcctcaatgctctcctcctc 1982



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>ref|XM_924051.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 12 (Camsap1l1), mRNA
          Length = 4439

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 22   tcttcctcaattctctcctcctc 44
            ||||||||||| |||||||||||
Sbjct: 2121 tcttcctcaatgctctcctcctc 2099



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>ref|XM_924058.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 16 (Camsap1l1), mRNA
          Length = 7823

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 22   tcttcctcaattctctcctcctc 44
            ||||||||||| |||||||||||
Sbjct: 2139 tcttcctcaatgctctcctcctc 2117



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>ref|XM_924052.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 13 (Camsap1l1), mRNA
          Length = 7814

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 22   tcttcctcaattctctcctcctc 44
            ||||||||||| |||||||||||
Sbjct: 2088 tcttcctcaatgctctcctcctc 2066



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>ref|XM_924054.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 15 (Camsap1l1), mRNA
          Length = 7799

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 22   tcttcctcaattctctcctcctc 44
            ||||||||||| |||||||||||
Sbjct: 2088 tcttcctcaatgctctcctcctc 2066



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>ref|XM_924045.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 10 (Camsap1l1), mRNA
          Length = 7772

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 22   tcttcctcaattctctcctcctc 44
            ||||||||||| |||||||||||
Sbjct: 2088 tcttcctcaatgctctcctcctc 2066



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>ref|XM_916022.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 9 (Camsap1l1), mRNA
          Length = 7805

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 22   tcttcctcaattctctcctcctc 44
            ||||||||||| |||||||||||
Sbjct: 2121 tcttcctcaatgctctcctcctc 2099



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>ref|XM_899101.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 4 (Camsap1l1), mRNA
          Length = 4439

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 22   tcttcctcaattctctcctcctc 44
            ||||||||||| |||||||||||
Sbjct: 2121 tcttcctcaatgctctcctcctc 2099



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>ref|XM_899121.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 8 (Camsap1l1), mRNA
          Length = 7823

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 22   tcttcctcaattctctcctcctc 44
            ||||||||||| |||||||||||
Sbjct: 2139 tcttcctcaatgctctcctcctc 2117



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>ref|XM_899106.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 5 (Camsap1l1), mRNA
          Length = 7814

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 22   tcttcctcaattctctcctcctc 44
            ||||||||||| |||||||||||
Sbjct: 2088 tcttcctcaatgctctcctcctc 2066



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>ref|XM_899116.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 7 (Camsap1l1), mRNA
          Length = 7799

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 22   tcttcctcaattctctcctcctc 44
            ||||||||||| |||||||||||
Sbjct: 2088 tcttcctcaatgctctcctcctc 2066



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>ref|XM_899089.2| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 2 (Camsap1l1), mRNA
          Length = 7772

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 22   tcttcctcaattctctcctcctc 44
            ||||||||||| |||||||||||
Sbjct: 2088 tcttcctcaatgctctcctcctc 2066



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>ref|XM_129477.9| PREDICTED: Mus musculus calmodulin regulated spectrin-associated
            protein 1-like 1, transcript variant 1 (Camsap1l1), mRNA
          Length = 7805

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 22   tcttcctcaattctctcctcctc 44
            ||||||||||| |||||||||||
Sbjct: 2121 tcttcctcaatgctctcctcctc 2099



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>gb|AC137877.6| Mus musculus chromosome 10, clone RP23-72A1, complete sequence
          Length = 172812

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 24     ttcctcaattctctcctcc 42
              |||||||||||||||||||
Sbjct: 139515 ttcctcaattctctcctcc 139497



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>gb|AC166654.1| Mus musculus BAC clone RP23-426B21 from chromosome 17, complete sequence
          Length = 185609

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 46     cacagtgggaggacagggt 64
              |||||||||||||||||||
Sbjct: 112824 cacagtgggaggacagggt 112806



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>emb|AL139331.19| Human DNA sequence from clone RP11-328M4 on chromosome 6 Contains a
             novel gene,  the FOXP4 gene for forkhead box P4 and five
             CpG islands, complete sequence
          Length = 180547

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 24    ttcctcaattctctcctcc 42
             |||||||||||||||||||
Sbjct: 88413 ttcctcaattctctcctcc 88395



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>gb|AC021698.12| Homo sapiens chromosome 11, clone RP11-430L3, complete sequence
          Length = 201673

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   gggtttgttgcacagctta 147
             |||||||||||||||||||
Sbjct: 22061 gggtttgttgcacagctta 22079



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>dbj|AK137176.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
            enriched library, clone:9530028C17
            product:unclassifiable, full insert sequence
          Length = 4372

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 46   cacagtgggaggacagggt 64
            |||||||||||||||||||
Sbjct: 2091 cacagtgggaggacagggt 2109



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>gb|AC079064.6| Homo sapiens chromosome 11, clone RP11-485O14, complete sequence
          Length = 164009

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 129   gggtttgttgcacagctta 147
             |||||||||||||||||||
Sbjct: 10574 gggtttgttgcacagctta 10556



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>dbj|AK028542.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched
            library, clone:4632425I16 product:hypothetical
            Calponin-homology domain, CH-domain structure containing
            protein, full insert sequence
          Length = 4222

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 22   tcttcctcaattctctcctcctc 44
            ||||||||||| |||||||||||
Sbjct: 2089 tcttcctcaatgctctcctcctc 2067



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>gb|AC087318.33| Homo sapiens 12 BAC RP11-73M14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 104647

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 45    gcacagtgggaggacaggg 63
             |||||||||||||||||||
Sbjct: 52388 gcacagtgggaggacaggg 52370



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>gb|AC004148.1|AC004148 Homo sapiens chromosome 17, clone HCIT524C5, complete sequence
          Length = 118276

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 9     ctccctactgagttcttcc 27
             |||||||||||||||||||
Sbjct: 93598 ctccctactgagttcttcc 93616



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>gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0056O04, from
             chromosome 4, complete sequence
          Length = 90825

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    ttcttcctcaattctctcc 39
             |||||||||||||||||||
Sbjct: 37318 ttcttcctcaattctctcc 37300



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>emb|AL590873.17| Mouse DNA sequence from clone RP23-217I3 on chromosome 11, complete
              sequence
          Length = 180309

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     tcaattctctcctcctcgc 46
              |||||||||||||||||||
Sbjct: 131905 tcaattctctcctcctcgc 131923


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,082,623
Number of Sequences: 3902068
Number of extensions: 1082623
Number of successful extensions: 73615
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73522
Number of HSP's gapped (non-prelim): 93
length of query: 149
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 128
effective length of database: 17,151,101,840
effective search space: 2195341035520
effective search space used: 2195341035520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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