>emb|AJ459419.1|TRU459419 Takifugu rubripes cacng5 gene, prkca gene and putative LINE-like
             retrotransposon, cosmids C012B17 and C123B01
          Length = 64219

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 63    tacatctaagctactataggacttg 87
             ||||||||||||||| |||||||||
Sbjct: 15478 tacatctaagctactgtaggacttg 15454

>emb|BX901901.6| Zebrafish DNA sequence from clone CH211-223B8 in linkage group 1,
              complete sequence
          Length = 172983

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 121    aatttgttatgtgttgtatgttaat 145
              ||||||||||||||| |||||||||
Sbjct: 162785 aatttgttatgtgttatatgttaat 162761

>emb|AL121916.14|HSJ189G13 Human DNA sequence from clone RP1-189G13 on chromosome 20 Contains the
             RPL7AL2 gene for ribosomal protein L7a like 2 (pseudogene)
             and part of a ribosomal protein S4 pseudogene, complete
             sequence
          Length = 100167

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    ggacttgccagtccttgcaa 100
             ||||||||||||||||||||
Sbjct: 24899 ggacttgccagtccttgcaa 24880

>gb|AC164638.4| Mus musculus BAC clone RP23-198N12 from chromosome 7, complete sequence
          Length = 242297

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   aatttgttatgtgttgtatg 140
             ||||||||||||||||||||
Sbjct: 69949 aatttgttatgtgttgtatg 69968

>emb|AL132969.2|ATF8J2 Arabidopsis thaliana DNA chromosome 3, BAC clone F8J2
          Length = 99814

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   ttatgtgttgtatgttaatg 146
             ||||||||||||||||||||
Sbjct: 99152 ttatgtgttgtatgttaatg 99133

>gb|AC157819.5| Mus musculus chromosome 3, clone RP24-273H20, complete sequence
          Length = 151601

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    attttcaagaaattgcggta 60
             ||||||||||||||||||||
Sbjct: 13907 attttcaagaaattgcggta 13926

>emb|Y12736.2|LLCPJW565 Lactococcus lactis subsp. cremoris plasmid pJW565 DNA, LlaBIIM,
            LlaBIIR genes and orfX
          Length = 12828

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   tagtgtattttcaagaaatt 54
            ||||||||||||||||||||
Sbjct: 8182 tagtgtattttcaagaaatt 8201

>gb|AC103937.16| Mus musculus chromosome 3, clone RP23-229C5, complete sequence
          Length = 179805

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    attttcaagaaattgcggta 60
             ||||||||||||||||||||
Sbjct: 87165 attttcaagaaattgcggta 87184

>gb|AC099607.6| Mus musculus chromosome 5, clone RP23-361G20, complete sequence
          Length = 204179

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 96     tgcaatgcagtgtttcaca 114
              |||||||||||||||||||
Sbjct: 160352 tgcaatgcagtgtttcaca 160370

>gb|AC148460.2| Xenopus tropicalis clone CH216-3L17, complete sequence
          Length = 194144

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 141   ttaatgcttaattgacagt 159
             |||||||||||||||||||
Sbjct: 60187 ttaatgcttaattgacagt 60205

>gb|AC022699.11| Mus musculus chromosome 10, clone RP23-107I8, complete sequence
          Length = 225763

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 99     aatgcagtgtttcacagaa 117
              |||||||||||||||||||
Sbjct: 171180 aatgcagtgtttcacagaa 171162

>emb|CR388412.9| Zebrafish DNA sequence from clone CH211-69G13 in linkage group 5,
              complete sequence
          Length = 158289

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 118    ctcaatttgttatgtgttgtatg 140
              |||||||||| ||||||||||||
Sbjct: 104707 ctcaatttgtaatgtgttgtatg 104729

>ref|XM_811065.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053510885.130) partial mRNA
          Length = 1914

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 55   gcggtatttacatctaagc 73
            |||||||||||||||||||
Sbjct: 1018 gcggtatttacatctaagc 1036

>gb|AC121997.3| Mus musculus BAC clone RP24-312G4 from chromosome 14, complete sequence
          Length = 143266

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 119   tcaatttgttatgtgttgt 137
             |||||||||||||||||||
Sbjct: 61912 tcaatttgttatgtgttgt 61894

>emb|CR788268.5| Human DNA sequence from clone RP11-24B13 on chromosome 9 Contains the
             3' end of the gene for a novel protein similar to
             contactin associated protein-like 3 (CNTNAP3) and an RNA
             binding motif protein 17 (RBM17) pseudogene, complete
             sequence
          Length = 164026

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 79    taggacttgccagtccttgcaat 101
             |||||||||||||||||| ||||
Sbjct: 32374 taggacttgccagtccttacaat 32352

>emb|AL391056.25| Human DNA sequence from clone RP11-492E3 on chromosome 9 Contains the 3'
              end of a novel gene (FLJ35367, FLJ14115), a novel gene
              (FLJ20378), the 5' end of the gene for AD-003 protein
              (AD-003), the 3' end of a novel gene (FLJ35803), a novel
              gene and six CpG islands, complete sequence
          Length = 129462

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 94     cttgcaatgcagtgtttcacaga 116
              |||||||||||||||||| ||||
Sbjct: 112766 cttgcaatgcagtgtttctcaga 112744

>emb|AL353729.17| Human DNA sequence from clone RP11-290L7 on chromosome 9 Contains the
            3' end of the CNTNAP3 gene for contactin associated
            protein-like 3, a TGF beta-inducible nuclear protein 1
            (TINP1) pseudogene and a RNA binding motif protein 17
            (RBM17) pseudogene, complete sequence
          Length = 195668

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 79   taggacttgccagtccttgcaat 101
            |||||||||||||||||| ||||
Sbjct: 8418 taggacttgccagtccttacaat 8396

>emb|AL162233.14| Human DNA sequence from clone RP11-292B8 on chromosome 9 Contains a
              pseudogene similar to part of contactin associated
              protein-like 3 (CNTNAP3), an RNA binding motif protein 17
              (RBM17) pseudogene and a CpG island, complete sequence
          Length = 179833

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 79     taggacttgccagtccttgcaat 101
              |||||||||||||||||| ||||
Sbjct: 150744 taggacttgccagtccttacaat 150722

>gb|AC163326.2| Mus musculus chromosome 5, clone RP24-295J8, complete sequence
          Length = 158802

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 96    tgcaatgcagtgtttcaca 114
             |||||||||||||||||||
Sbjct: 23293 tgcaatgcagtgtttcaca 23311

>gb|AC104009.7| Homo sapiens chromosome 11, clone RP11-204B15, complete sequence
          Length = 146515

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 132 tgttgtatgttaatgctta 150
           |||||||||||||||||||
Sbjct: 370 tgttgtatgttaatgctta 388

>emb|AL607000.3|OSJN00132 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089B03,
              complete sequence
          Length = 130910

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 135    tgtatgttaatgcttaatt 153
              |||||||||||||||||||
Sbjct: 114342 tgtatgttaatgcttaatt 114324

>gb|AE014178.1| Mus musculus piebald deletion region section 6 of 11 of the complete
              sequence
          Length = 400029

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 119    tcaatttgttatgtgttgt 137
              |||||||||||||||||||
Sbjct: 219171 tcaatttgttatgtgttgt 219153

>gb|AC107886.2| Homo sapiens chromosome 11, clone CTD-3064C13, complete sequence
          Length = 133892

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 132    tgttgtatgttaatgctta 150
              |||||||||||||||||||
Sbjct: 106904 tgttgtatgttaatgctta 106922

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 135      tgtatgttaatgcttaatt 153
                |||||||||||||||||||
Sbjct: 18646476 tgtatgttaatgcttaatt 18646458

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 94      cttgcaatgcagtgtttca 112
               |||||||||||||||||||
Sbjct: 1224419 cttgcaatgcagtgtttca 1224401

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 122     atttgttatgtgttgtatg 140
               |||||||||||||||||||
Sbjct: 7112231 atttgttatgtgttgtatg 7112249

>gb|AC157089.5| Mus musculus 10 BAC RP24-339G14 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 160723

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 99     aatgcagtgtttcacagaa 117
              |||||||||||||||||||
Sbjct: 147476 aatgcagtgtttcacagaa 147494

>gb|AC154470.2| Mus musculus BAC clone RP23-193P13 from chromosome 13, complete sequence
          Length = 216294

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 108    tttcacagaactcaatttg 126
              |||||||||||||||||||
Sbjct: 174485 tttcacagaactcaatttg 174467

>gb|AF242860.1|AF242860 Trypanosoma cruzi clone cosmid 1K19 NPK-1 protein kinase-like protein
             gene, complete cds; and unknown genes
          Length = 39465

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 55    gcggtatttacatctaagc 73
             |||||||||||||||||||
Sbjct: 36141 gcggtatttacatctaagc 36159

>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0495C02
          Length = 151467

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 122    atttgttatgtgttgtatg 140
              |||||||||||||||||||
Sbjct: 115650 atttgttatgtgttgtatg 115668

>dbj|AP005789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0563F09
          Length = 174905

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 94    cttgcaatgcagtgtttca 112
             |||||||||||||||||||
Sbjct: 55293 cttgcaatgcagtgtttca 55275

>emb|AL928595.15| Mouse DNA sequence from clone RP23-34C18 on chromosome 2, complete
             sequence
          Length = 135630

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 125   tgttatgtgttgtatgtta 143
             |||||||||||||||||||
Sbjct: 35868 tgttatgtgttgtatgtta 35850

>dbj|AP005394.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0620H05
          Length = 161808

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 122   atttgttatgtgttgtatg 140
             |||||||||||||||||||
Sbjct: 12168 atttgttatgtgttgtatg 12186

>emb|AL450003.2|HS62F24 Homo sapiens chromosome 9 BAC RP11-62F24, complete sequence
          Length = 160737

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 75     actataggacttgccagtc 93
              |||||||||||||||||||
Sbjct: 105285 actataggacttgccagtc 105267

>gb|AC116860.15| Mus musculus chromosome 10, clone RP24-407B18, complete sequence
          Length = 193505

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 125   tgttatgtgttgtatgtta 143
             |||||||||||||||||||
Sbjct: 92172 tgttatgtgttgtatgtta 92154


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,342,885
Number of Sequences: 3902068
Number of extensions: 1342885
Number of successful extensions: 95635
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95471
Number of HSP's gapped (non-prelim): 164
length of query: 169
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 147
effective length of database: 17,147,199,772
effective search space: 2520638366484
effective search space used: 2520638366484
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)