>KDTA_RICPR (Q9ZE58) 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-)|
           (KDO transferase)
          Length = 461

 Score = 30.8 bits (68), Expect = 0.93
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 30  NVASSFQLMSKNVEGFADEKYPAYKDRHKLATEREKAIKEKA 155
           N A  F  MS N EGF D K  +Y D H+ A+   K   E++
Sbjct: 46  NSALDFIQMSVNKEGFTDHKTTSYVDMHRNASLMYKLSLERS 87

>SYT_COXBU (Q83C10) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 651

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
 Frame = +3

Query: 21  DDANVASSFQLMSKNVEGFADEKYPAYKD------RHKLATEREKAIKE-----KAEQAR 167
           DDA++  +   +   V  F D+ +  Y D       HKL+T  EK +       KAEQA 
Sbjct: 381 DDAHIFCTEDQIQSEVSAFIDQLHEVYADFGFTEVIHKLSTRPEKRVGSDEVWTKAEQAL 440

Query: 168 AQ 173
           A+
Sbjct: 441 AE 442

>LEU3_CANAL (P87186) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 373

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 18  IDDANVASSFQLMSKNVEGFADEKYPAYKDRHKL 119
           +D ANV +S +L  K V+    E++PA   +H+L
Sbjct: 196 LDKANVLASSRLWRKTVDKVISEEFPALSVQHQL 229

>RAD50_AQUAE (O67124) Probable DNA double-strand break repair rad50 ATPase|
          Length = 978

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +3

Query: 33  VASSFQLMSKNVEGFADEKYPAYKDRHKLATEREKAIKEKAEQ 161
           VA + + + K  E F++E+Y + K + +L  E ++ +KE  E+
Sbjct: 390 VAETEEKLEKIKELFSEEEYTSLKMKERLLVELQRKLKELKEK 432

>SRC8_CHICK (Q01406) Src substrate protein p85 (p80) (Cortactin)|
          Length = 563

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +3

Query: 3   QESGDIDDANVASSFQLMSKNVEGFADEKYPAYKDRHKLATEREKAIKEKAEQARAQR 176
           + +   +D    +S    +K VE  A++      +   LA E+E+  + KAE  RAQR
Sbjct: 328 KNAATFEDIEKPTSTYQKTKPVERVANKTSSIRANLENLAKEKEQEDRRKAEAERAQR 385

>LEU3_YEAST (P04173) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 364

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 18  IDDANVASSFQLMSKNVEGFADEKYPAYKDRHKL 119
           +D ANV +S +L  K VE     ++P  K +H+L
Sbjct: 190 LDKANVLASSRLWRKTVEETIKNEFPTLKVQHQL 223


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,292,702
Number of Sequences: 219361
Number of extensions: 442026
Number of successful extensions: 1419
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)