| Clone Name | baal18i14 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 293 bits (148), Expect = 3e-76 Identities = 369/442 (83%), Gaps = 3/442 (0%) Strand = Plus / Minus Query: 1 gtgatgtagttgcccatgcaagagaggagatcaataacctgagacatacaaatgaggacc 60 ||||||||||| |||||||||||||||||||||| || ||||| ||| ||||||| |||| Sbjct: 276329 gtgatgtagtttcccatgcaagagaggagatcaacaagctgaggcatgcaaatgaagacc 276270 Query: 61 tcacaaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgt 120 | || |||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| | Sbjct: 276269 ttaccaagcaagtagaaggcctacaaatgaacagattcagtgaagtagaagagttggttt 276210 Query: 121 acctgcgttgggtcaacgcctgtctgcgattcgagctccgcaactaccagacaccatcgg 180 ||||||||||||| || || |||||| ||| |||||||||||||||||| |||| || | Sbjct: 276209 acctgcgttgggttaatgcttgtctgagatatgagctccgcaactaccaggcaccgtctg 276150 Query: 181 gcaaaatctctgcccgcgacctcagcacgaagctcagcccaaagtctcaggagagggcca 240 ||||| ||||| || ||||| | || || || |||||||| || | |||||||||| Sbjct: 276149 agaaaatttctgctcgtgaccttaacaagaccctgagcccaaaatcgcgtgagagggcca 276090 Query: 241 aacagatgatgctcgaattt---gggtctgagcgaggccagggcgacactgaccttgaca 297 ||| | ||||| |||| | || || || ||||| |||||||||||||||||||| | Sbjct: 276089 aacttctaatgctggaatatgcaggatcagaacgaggacagggcgacactgaccttgaaa 276030 Query: 298 gtgtctcctcggcaccttcttcccccagaagcgaagacttcgacaccgcttcgatcgaca 357 || || || ||||||||||| |||||||||||||||||||||| || ||| | |||| Sbjct: 276029 ctgcttcttctgcaccttcttcacccagaagcgaagacttcgacaacgtttcagttgaca 275970 Query: 358 gctcttccagcagatacagcttcctaagcaagaggccgaacctgatgcagaaactcaaga 417 | ||||| ||||||||||||||| | |||| ||||| || |||||||| || ||||||| Sbjct: 275969 gttcttctagcagatacagcttctttggcaaaaggcccaatctgatgcaaaagctcaaga 275910 Query: 418 agtggggaaggagcaaggatga 439 ||||||||||| |||||||||| Sbjct: 275909 agtggggaaggggcaaggatga 275888
>dbj|AK072914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150I16, full insert sequence Length = 3183 Score = 293 bits (148), Expect = 3e-76 Identities = 369/442 (83%), Gaps = 3/442 (0%) Strand = Plus / Plus Query: 1 gtgatgtagttgcccatgcaagagaggagatcaataacctgagacatacaaatgaggacc 60 ||||||||||| |||||||||||||||||||||| || ||||| ||| ||||||| |||| Sbjct: 1039 gtgatgtagtttcccatgcaagagaggagatcaacaagctgaggcatgcaaatgaagacc 1098 Query: 61 tcacaaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgt 120 | || |||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| | Sbjct: 1099 ttaccaagcaagtagaaggcctacaaatgaacagattcagtgaagtagaagagttggttt 1158 Query: 121 acctgcgttgggtcaacgcctgtctgcgattcgagctccgcaactaccagacaccatcgg 180 ||||||||||||| || || |||||| ||| |||||||||||||||||| |||| || | Sbjct: 1159 acctgcgttgggttaatgcttgtctgagatatgagctccgcaactaccaggcaccgtctg 1218 Query: 181 gcaaaatctctgcccgcgacctcagcacgaagctcagcccaaagtctcaggagagggcca 240 ||||| ||||| || ||||| | || || || |||||||| || | |||||||||| Sbjct: 1219 agaaaatttctgctcgtgaccttaacaagaccctgagcccaaaatcgcgtgagagggcca 1278 Query: 241 aacagatgatgctcgaattt---gggtctgagcgaggccagggcgacactgaccttgaca 297 ||| | ||||| |||| | || || || ||||| |||||||||||||||||||| | Sbjct: 1279 aacttctaatgctggaatatgcaggatcagaacgaggacagggcgacactgaccttgaaa 1338 Query: 298 gtgtctcctcggcaccttcttcccccagaagcgaagacttcgacaccgcttcgatcgaca 357 || || || ||||||||||| |||||||||||||||||||||| || ||| | |||| Sbjct: 1339 ctgcttcttctgcaccttcttcacccagaagcgaagacttcgacaacgtttcagttgaca 1398 Query: 358 gctcttccagcagatacagcttcctaagcaagaggccgaacctgatgcagaaactcaaga 417 | ||||| ||||||||||||||| | |||| ||||| || |||||||| || ||||||| Sbjct: 1399 gttcttctagcagatacagcttctttggcaaaaggcccaatctgatgcaaaagctcaaga 1458 Query: 418 agtggggaaggagcaaggatga 439 ||||||||||| |||||||||| Sbjct: 1459 agtggggaaggggcaaggatga 1480
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 293 bits (148), Expect = 3e-76 Identities = 369/442 (83%), Gaps = 3/442 (0%) Strand = Plus / Minus Query: 1 gtgatgtagttgcccatgcaagagaggagatcaataacctgagacatacaaatgaggacc 60 ||||||||||| |||||||||||||||||||||| || ||||| ||| ||||||| |||| Sbjct: 276329 gtgatgtagtttcccatgcaagagaggagatcaacaagctgaggcatgcaaatgaagacc 276270 Query: 61 tcacaaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgt 120 | || |||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| | Sbjct: 276269 ttaccaagcaagtagaaggcctacaaatgaacagattcagtgaagtagaagagttggttt 276210 Query: 121 acctgcgttgggtcaacgcctgtctgcgattcgagctccgcaactaccagacaccatcgg 180 ||||||||||||| || || |||||| ||| |||||||||||||||||| |||| || | Sbjct: 276209 acctgcgttgggttaatgcttgtctgagatatgagctccgcaactaccaggcaccgtctg 276150 Query: 181 gcaaaatctctgcccgcgacctcagcacgaagctcagcccaaagtctcaggagagggcca 240 ||||| ||||| || ||||| | || || || |||||||| || | |||||||||| Sbjct: 276149 agaaaatttctgctcgtgaccttaacaagaccctgagcccaaaatcgcgtgagagggcca 276090 Query: 241 aacagatgatgctcgaattt---gggtctgagcgaggccagggcgacactgaccttgaca 297 ||| | ||||| |||| | || || || ||||| |||||||||||||||||||| | Sbjct: 276089 aacttctaatgctggaatatgcaggatcagaacgaggacagggcgacactgaccttgaaa 276030 Query: 298 gtgtctcctcggcaccttcttcccccagaagcgaagacttcgacaccgcttcgatcgaca 357 || || || ||||||||||| |||||||||||||||||||||| || ||| | |||| Sbjct: 276029 ctgcttcttctgcaccttcttcacccagaagcgaagacttcgacaacgtttcagttgaca 275970 Query: 358 gctcttccagcagatacagcttcctaagcaagaggccgaacctgatgcagaaactcaaga 417 | ||||| ||||||||||||||| | |||| ||||| || |||||||| || ||||||| Sbjct: 275969 gttcttctagcagatacagcttctttggcaaaaggcccaatctgatgcaaaagctcaaga 275910 Query: 418 agtggggaaggagcaaggatga 439 ||||||||||| |||||||||| Sbjct: 275909 agtggggaaggggcaaggatga 275888
>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152222 Score = 293 bits (148), Expect = 3e-76 Identities = 369/442 (83%), Gaps = 3/442 (0%) Strand = Plus / Minus Query: 1 gtgatgtagttgcccatgcaagagaggagatcaataacctgagacatacaaatgaggacc 60 ||||||||||| |||||||||||||||||||||| || ||||| ||| ||||||| |||| Sbjct: 9380 gtgatgtagtttcccatgcaagagaggagatcaacaagctgaggcatgcaaatgaagacc 9321 Query: 61 tcacaaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgt 120 | || |||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| | Sbjct: 9320 ttaccaagcaagtagaaggcctacaaatgaacagattcagtgaagtagaagagttggttt 9261 Query: 121 acctgcgttgggtcaacgcctgtctgcgattcgagctccgcaactaccagacaccatcgg 180 ||||||||||||| || || |||||| ||| |||||||||||||||||| |||| || | Sbjct: 9260 acctgcgttgggttaatgcttgtctgagatatgagctccgcaactaccaggcaccgtctg 9201 Query: 181 gcaaaatctctgcccgcgacctcagcacgaagctcagcccaaagtctcaggagagggcca 240 ||||| ||||| || ||||| | || || || |||||||| || | |||||||||| Sbjct: 9200 agaaaatttctgctcgtgaccttaacaagaccctgagcccaaaatcgcgtgagagggcca 9141 Query: 241 aacagatgatgctcgaattt---gggtctgagcgaggccagggcgacactgaccttgaca 297 ||| | ||||| |||| | || || || ||||| |||||||||||||||||||| | Sbjct: 9140 aacttctaatgctggaatatgcaggatcagaacgaggacagggcgacactgaccttgaaa 9081 Query: 298 gtgtctcctcggcaccttcttcccccagaagcgaagacttcgacaccgcttcgatcgaca 357 || || || ||||||||||| |||||||||||||||||||||| || ||| | |||| Sbjct: 9080 ctgcttcttctgcaccttcttcacccagaagcgaagacttcgacaacgtttcagttgaca 9021 Query: 358 gctcttccagcagatacagcttcctaagcaagaggccgaacctgatgcagaaactcaaga 417 | ||||| ||||||||||||||| | |||| ||||| || |||||||| || ||||||| Sbjct: 9020 gttcttctagcagatacagcttctttggcaaaaggcccaatctgatgcaaaagctcaaga 8961 Query: 418 agtggggaaggagcaaggatga 439 ||||||||||| |||||||||| Sbjct: 8960 agtggggaaggggcaaggatga 8939
>dbj|AK099132.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023051M04, full insert sequence Length = 3065 Score = 285 bits (144), Expect = 6e-74 Identities = 368/442 (83%), Gaps = 3/442 (0%) Strand = Plus / Plus Query: 1 gtgatgtagttgcccatgcaagagaggagatcaataacctgagacatacaaatgaggacc 60 ||||||||||| |||||||||||||||||||||| || ||||| ||| ||||||| |||| Sbjct: 924 gtgatgtagtttcccatgcaagagaggagatcaacaagctgaggcatgcaaatgaagacc 983 Query: 61 tcacaaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgt 120 | || |||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| | Sbjct: 984 ttaccaagcaagtagaaggcctacaaatgaacagattcagtgaagtagaagagttggttt 1043 Query: 121 acctgcgttgggtcaacgcctgtctgcgattcgagctccgcaactaccagacaccatcgg 180 ||||||||||||| || || |||||| ||| |||||||||||||||||| |||| || | Sbjct: 1044 acctgcgttgggttaatgcttgtctgagatatgagctccgcaactaccaggcaccgtctg 1103 Query: 181 gcaaaatctctgcccgcgacctcagcacgaagctcagcccaaagtctcaggagagggcca 240 || || ||||| || ||||| | || || || |||||||| || | |||||||||| Sbjct: 1104 agaagatttctgctcgtgaccttaacaagaccctgagcccaaaatcgcgtgagagggcca 1163 Query: 241 aacagatgatgctcgaattt---gggtctgagcgaggccagggcgacactgaccttgaca 297 ||| | ||||| |||| | || || || ||||| |||||||||||||||||||| | Sbjct: 1164 aacttctaatgctggaatatgcaggatcagaacgaggacagggcgacactgaccttgaaa 1223 Query: 298 gtgtctcctcggcaccttcttcccccagaagcgaagacttcgacaccgcttcgatcgaca 357 || || || ||||||||||| |||||||||||||||||||||| || ||| | |||| Sbjct: 1224 ctgcttcttctgcaccttcttcacccagaagcgaagacttcgacaacgtttcagttgaca 1283 Query: 358 gctcttccagcagatacagcttcctaagcaagaggccgaacctgatgcagaaactcaaga 417 | ||||| ||||||||||||||| | |||| ||||| || |||||||| || ||||||| Sbjct: 1284 gttcttctagcagatacagcttctttggcaaaaggcccaatctgatgcaaaagctcaaga 1343 Query: 418 agtggggaaggagcaaggatga 439 ||||||||||| |||||||||| Sbjct: 1344 agtggggaaggggcaaggatga 1365
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 274 bits (138), Expect = 2e-70 Identities = 368/444 (82%), Gaps = 3/444 (0%) Strand = Plus / Minus Query: 1 gtgatgtagttgcccatgcaagagaggagatcaataacctgagacatacaaatgaggacc 60 ||||||||||| |||||||||||||||||||||| || ||||| ||| |||||| |||| Sbjct: 258588 gtgatgtagtttcccatgcaagagaggagatcaacaagctgaggcatgtaaatgaagacc 258529 Query: 61 tcacaaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgt 120 | || |||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| | Sbjct: 258528 ttaccaagcaagtagaaggcctacaaatgaacagattcagtgaagtagaagagttggttt 258469 Query: 121 acctgcgttgggtcaacgcctgtctgcgattcgagctccgcaactaccagacaccatcgg 180 ||||||||||||| || || |||||| ||| |||||||||||||||||| ||||||| | Sbjct: 258468 acctgcgttgggttaatgcttgtctgagatatgagctccgcaactaccaggcaccatctg 258409 Query: 181 gcaaaatctctgcccgcgacctcagcacgaagctcagcccaaagtctcaggagagggcca 240 ||||| ||||| || |||| | || || || |||||||| || | |||||||||| Sbjct: 258408 agaaaatttctgctcgttaccttaacaagaccctgagcccaaaatcgcgtgagagggcca 258349 Query: 241 aacagatgatgctcgaattt---gggtctgagcgaggccagggcgacactgaccttgaca 297 ||| | ||||| |||| | || || || ||||| |||||||||||||||||||| | Sbjct: 258348 aacttctaatgctggaatatgcaggatcagaacgaggacagggcgacactgaccttgaaa 258289 Query: 298 gtgtctcctcggcaccttcttcccccagaagcgaagacttcgacaccgcttcgatcgaca 357 || || || ||||||||||| ||||||||||||||||| |||| | ||| | |||| Sbjct: 258288 ctgcttcttctgcaccttcttcacccagaagcgaagacttggacaatgtttcagttgaca 258229 Query: 358 gctcttccagcagatacagcttcctaagcaagaggccgaacctgatgcagaaactcaaga 417 | ||||| ||||||||||||||| | |||| ||||| || |||||||| || ||||||| Sbjct: 258228 gttcttctagcagatacagcttctttggcaaaaggcccaatctgatgcaaaagctcaaga 258169 Query: 418 agtggggaaggagcaaggatgatg 441 ||||||||||| |||||||||||| Sbjct: 258168 agtggggaaggggcaaggatgatg 258145
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 274 bits (138), Expect = 2e-70 Identities = 368/444 (82%), Gaps = 3/444 (0%) Strand = Plus / Minus Query: 1 gtgatgtagttgcccatgcaagagaggagatcaataacctgagacatacaaatgaggacc 60 ||||||||||| |||||||||||||||||||||| || ||||| ||| |||||| |||| Sbjct: 258588 gtgatgtagtttcccatgcaagagaggagatcaacaagctgaggcatgtaaatgaagacc 258529 Query: 61 tcacaaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgt 120 | || |||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| | Sbjct: 258528 ttaccaagcaagtagaaggcctacaaatgaacagattcagtgaagtagaagagttggttt 258469 Query: 121 acctgcgttgggtcaacgcctgtctgcgattcgagctccgcaactaccagacaccatcgg 180 ||||||||||||| || || |||||| ||| |||||||||||||||||| ||||||| | Sbjct: 258468 acctgcgttgggttaatgcttgtctgagatatgagctccgcaactaccaggcaccatctg 258409 Query: 181 gcaaaatctctgcccgcgacctcagcacgaagctcagcccaaagtctcaggagagggcca 240 ||||| ||||| || |||| | || || || |||||||| || | |||||||||| Sbjct: 258408 agaaaatttctgctcgttaccttaacaagaccctgagcccaaaatcgcgtgagagggcca 258349 Query: 241 aacagatgatgctcgaattt---gggtctgagcgaggccagggcgacactgaccttgaca 297 ||| | ||||| |||| | || || || ||||| |||||||||||||||||||| | Sbjct: 258348 aacttctaatgctggaatatgcaggatcagaacgaggacagggcgacactgaccttgaaa 258289 Query: 298 gtgtctcctcggcaccttcttcccccagaagcgaagacttcgacaccgcttcgatcgaca 357 || || || ||||||||||| ||||||||||||||||| |||| | ||| | |||| Sbjct: 258288 ctgcttcttctgcaccttcttcacccagaagcgaagacttggacaatgtttcagttgaca 258229 Query: 358 gctcttccagcagatacagcttcctaagcaagaggccgaacctgatgcagaaactcaaga 417 | ||||| ||||||||||||||| | |||| ||||| || |||||||| || ||||||| Sbjct: 258228 gttcttctagcagatacagcttctttggcaaaaggcccaatctgatgcaaaagctcaaga 258169 Query: 418 agtggggaaggagcaaggatgatg 441 ||||||||||| |||||||||||| Sbjct: 258168 agtggggaaggggcaaggatgatg 258145
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 274 bits (138), Expect = 2e-70 Identities = 368/444 (82%), Gaps = 3/444 (0%) Strand = Plus / Plus Query: 1 gtgatgtagttgcccatgcaagagaggagatcaataacctgagacatacaaatgaggacc 60 ||||||||||| |||||||||||||||||||||| || ||||| ||| |||||| |||| Sbjct: 46405 gtgatgtagtttcccatgcaagagaggagatcaacaagctgaggcatgtaaatgaagacc 46464 Query: 61 tcacaaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgt 120 | || |||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| | Sbjct: 46465 ttaccaagcaagtagaaggcctacaaatgaacagattcagtgaagtagaagagttggttt 46524 Query: 121 acctgcgttgggtcaacgcctgtctgcgattcgagctccgcaactaccagacaccatcgg 180 ||||||||||||| || || |||||| ||| |||||||||||||||||| ||||||| | Sbjct: 46525 acctgcgttgggttaatgcttgtctgagatatgagctccgcaactaccaggcaccatctg 46584 Query: 181 gcaaaatctctgcccgcgacctcagcacgaagctcagcccaaagtctcaggagagggcca 240 ||||| ||||| || |||| | || || || |||||||| || | |||||||||| Sbjct: 46585 agaaaatttctgctcgttaccttaacaagaccctgagcccaaaatcgcgtgagagggcca 46644 Query: 241 aacagatgatgctcgaattt---gggtctgagcgaggccagggcgacactgaccttgaca 297 ||| | ||||| |||| | || || || ||||| |||||||||||||||||||| | Sbjct: 46645 aacttctaatgctggaatatgcaggatcagaacgaggacagggcgacactgaccttgaaa 46704 Query: 298 gtgtctcctcggcaccttcttcccccagaagcgaagacttcgacaccgcttcgatcgaca 357 || || || ||||||||||| ||||||||||||||||| |||| | ||| | |||| Sbjct: 46705 ctgcttcttctgcaccttcttcacccagaagcgaagacttggacaatgtttcagttgaca 46764 Query: 358 gctcttccagcagatacagcttcctaagcaagaggccgaacctgatgcagaaactcaaga 417 | ||||| ||||||||||||||| | |||| ||||| || |||||||| || ||||||| Sbjct: 46765 gttcttctagcagatacagcttctttggcaaaaggcccaatctgatgcaaaagctcaaga 46824 Query: 418 agtggggaaggagcaaggatgatg 441 ||||||||||| |||||||||||| Sbjct: 46825 agtggggaaggggcaaggatgatg 46848
>gb|AC146570.6| Medicago truncatula clone mth2-103j7, complete sequence Length = 122623 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 65 aaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgtacct 124 ||||||||||||||| || |||||||| || ||||||||||| || || || || ||||| Sbjct: 76110 aaagcaagtggaaggactccagatgaataggttcagtgaagttgaagaacttgtatacct 76051 Query: 125 gcgttgggtcaacgc 139 || ||||| ||||| Sbjct: 76050 tcgctgggttaacgc 76036
>gb|AC026424.5| Homo sapiens chromosome 5 clone CTD-2174D2, complete sequence Length = 123003 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Plus Query: 404 gcagaaactcaagaagtggggaagg 428 ||||||||||||||||||||||||| Sbjct: 11352 gcagaaactcaagaagtggggaagg 11376
>gb|AC010245.4|AC010245 Homo sapiens chromosome 5 clone CTC-366B18, complete sequence Length = 117840 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Minus Query: 404 gcagaaactcaagaagtggggaagg 428 ||||||||||||||||||||||||| Sbjct: 62109 gcagaaactcaagaagtggggaagg 62085
>gb|AC008488.7|AC008488 Homo sapiens chromosome 5 clone CTC-424O12, complete sequence Length = 208117 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Plus Query: 404 gcagaaactcaagaagtggggaagg 428 ||||||||||||||||||||||||| Sbjct: 175574 gcagaaactcaagaagtggggaagg 175598
>ref|NM_113468.3| Arabidopsis thaliana CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) AT3G25690 (CHUP1) mRNA, complete cds Length = 3379 Score = 48.1 bits (24), Expect = 0.026 Identities = 60/72 (83%) Strand = Plus / Plus Query: 65 aaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgtacct 124 ||||||||||||||| || || ||||| || || |||||||| ||||| |||| || || Sbjct: 1215 aaagcaagtggaagggcttcaaatgaataggtttagtgaagttgaggaattggtttatct 1274 Query: 125 gcgttgggtcaa 136 ||||||||||| Sbjct: 1275 acgttgggtcaa 1286
>dbj|AB087408.1| Arabidopsis thaliana CHUP1 mRNA for actin binding protein, complete cds Length = 3320 Score = 48.1 bits (24), Expect = 0.026 Identities = 60/72 (83%) Strand = Plus / Plus Query: 65 aaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgtacct 124 ||||||||||||||| || || ||||| || || |||||||| ||||| |||| || || Sbjct: 1215 aaagcaagtggaagggcttcaaatgaataggtttagtgaagttgaggaattggtttatct 1274 Query: 125 gcgttgggtcaa 136 ||||||||||| Sbjct: 1275 acgttgggtcaa 1286
>gb|AC158183.2| Selaginella moellendorffii clone JGIASXY-5D8, complete sequence Length = 39479 Score = 48.1 bits (24), Expect = 0.026 Identities = 48/56 (85%) Strand = Plus / Minus Query: 108 gaggagctggtgtacctgcgttgggtcaacgcctgtctgcgattcgagctccgcaa 163 ||||||||||| |||||||| |||||||| || || ||||| | |||||| ||||| Sbjct: 32657 gaggagctggtctacctgcgctgggtcaatgcttgcctgcgctacgagctacgcaa 32602
>dbj|AP001313.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:T5M7 Length = 65177 Score = 48.1 bits (24), Expect = 0.026 Identities = 60/72 (83%) Strand = Plus / Plus Query: 65 aaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgtacct 124 ||||||||||||||| || || ||||| || || |||||||| ||||| |||| || || Sbjct: 57161 aaagcaagtggaagggcttcaaatgaataggtttagtgaagttgaggaattggtttatct 57220 Query: 125 gcgttgggtcaa 136 ||||||||||| Sbjct: 57221 acgttgggtcaa 57232
>ref|XM_470027.1| Oryza sativa (japonica cultivar-group), mRNA Length = 559 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 428 gagcaaggatgatggcagctat 449 |||||||||||||||||||||| Sbjct: 256 gagcaaggatgatggcagctat 277
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 428 gagcaaggatgatggcagctat 449 |||||||||||||||||||||| Sbjct: 33413502 gagcaaggatgatggcagctat 33413523
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete sequence Length = 154555 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 428 gagcaaggatgatggcagctat 449 |||||||||||||||||||||| Sbjct: 84609 gagcaaggatgatggcagctat 84588
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 428 gagcaaggatgatggcagctat 449 |||||||||||||||||||||| Sbjct: 33504012 gagcaaggatgatggcagctat 33504033
>dbj|AK120337.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059N15, full insert sequence Length = 580 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 428 gagcaaggatgatggcagctat 449 |||||||||||||||||||||| Sbjct: 281 gagcaaggatgatggcagctat 302
>ref|XM_419095.1| PREDICTED: Gallus gallus similar to Hypothetical protein D230016L03 (LOC421009), mRNA Length = 6174 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 301 tctcctcggcaccttcttcccccag 325 |||||||||| |||||||||||||| Sbjct: 2620 tctcctcggccccttcttcccccag 2596
>gb|AC010985.8| Homo sapiens BAC clone RP11-521O14 from 2, complete sequence Length = 196020 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 gatgaacagattcagtgaagt 106 ||||||||||||||||||||| Sbjct: 9892 gatgaacagattcagtgaagt 9872
>gb|AC132432.4| Mus musculus BAC clone RP23-213H1 from 7, complete sequence Length = 198307 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 agaggccgaacctgatgcagaaact 412 |||||| |||||||||||||||||| Sbjct: 66259 agaggcagaacctgatgcagaaact 66235
>gb|AC134848.2| Mus musculus BAC clone RP24-196B3 from chromosome 8, complete sequence Length = 149146 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 agtggggaaggagcaaggat 437 |||||||||||||||||||| Sbjct: 122069 agtggggaaggagcaaggat 122088
>gb|AC108844.8| Mus musculus chromosome 8, clone RP23-383L20, complete sequence Length = 194316 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 agtggggaaggagcaaggat 437 |||||||||||||||||||| Sbjct: 152619 agtggggaaggagcaaggat 152600
>gb|AC145208.1| Homo sapiens chromosome 17, clone XXfos-85405H6, complete sequence Length = 37556 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 gcaaaatctctgcccgcgac 200 |||||||||||||||||||| Sbjct: 27872 gcaaaatctctgcccgcgac 27853
>emb|AL161547.2|ATCHRIV47 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47 Length = 198067 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 aagagaggagatcaataacc 39 |||||||||||||||||||| Sbjct: 144703 aagagaggagatcaataacc 144722
>emb|AL021889.2|ATT6K21 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K21 (ESSA project) Length = 99643 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 aagagaggagatcaataacc 39 |||||||||||||||||||| Sbjct: 68322 aagagaggagatcaataacc 68341
>gb|AC007472.6|AC007472 Drosophila melanogaster, chromosome 2R, region 49E-49F, BAC clone BACR30D19, complete sequence Length = 163052 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 aagcgaagacttcgacaccgcttc 349 ||||||||||||||||| |||||| Sbjct: 73421 aagcgaagacttcgacagcgcttc 73444
>gb|AC139530.3| Homo sapiens chromosome 17, clone RP13-1032I1, complete sequence Length = 159125 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 gcaaaatctctgcccgcgac 200 |||||||||||||||||||| Sbjct: 20796 gcaaaatctctgcccgcgac 20777
>gb|AC105286.5| Homo sapiens BAC clone RP11-107L21 from 2, complete sequence Length = 109231 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 ctcagcccaaagtctcagga 232 |||||||||||||||||||| Sbjct: 66531 ctcagcccaaagtctcagga 66512
>emb|AL929074.5| Zebrafish DNA sequence from clone CH211-101B14, complete sequence Length = 165705 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 gacactgaccttgacagtgt 301 |||||||||||||||||||| Sbjct: 150629 gacactgaccttgacagtgt 150610
>gb|AE003820.3| Drosophila melanogaster chromosome 2R, section 30 of 73 of the complete sequence Length = 263912 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 aagcgaagacttcgacaccgcttc 349 ||||||||||||||||| |||||| Sbjct: 142633 aagcgaagacttcgacagcgcttc 142656
>emb|AL772306.10| Mouse DNA sequence from clone RP23-89L15 on chromosome 4, complete sequence Length = 210648 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 gatgaacagattcagtgaagtaga 109 ||||||||| |||||||||||||| Sbjct: 86434 gatgaacagcttcagtgaagtaga 86457 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,758,088 Number of Sequences: 3902068 Number of extensions: 3758088 Number of successful extensions: 77198 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77031 Number of HSP's gapped (non-prelim): 164 length of query: 474 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 452 effective length of database: 17,147,199,772 effective search space: 7750534296944 effective search space used: 7750534296944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)