ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal18i14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 293 3e-76
2dbj|AK072914.1| Oryza sativa (japonica cultivar-group) cDNA clon... 293 3e-76
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 293 3e-76
4emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa... 293 3e-76
5dbj|AK099132.1| Oryza sativa (japonica cultivar-group) cDNA clon... 285 6e-74
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 274 2e-70
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 274 2e-70
8emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa... 274 2e-70
9gb|AC146570.6| Medicago truncatula clone mth2-103j7, complete se... 54 4e-04
10gb|AC026424.5| Homo sapiens chromosome 5 clone CTD-2174D2, compl... 50 0.007
11gb|AC010245.4|AC010245 Homo sapiens chromosome 5 clone CTC-366B1... 50 0.007
12gb|AC008488.7|AC008488 Homo sapiens chromosome 5 clone CTC-424O1... 50 0.007
13ref|NM_113468.3| Arabidopsis thaliana CHUP1 (CHLOROPLAST UNUSUAL... 48 0.026
14dbj|AB087408.1| Arabidopsis thaliana CHUP1 mRNA for actin bindin... 48 0.026
15gb|AC158183.2| Selaginella moellendorffii clone JGIASXY-5D8, com... 48 0.026
16dbj|AP001313.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 48 0.026
17ref|XM_470027.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.41
18gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.41
19gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genom... 44 0.41
20dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
21dbj|AK120337.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.41
22ref|XM_419095.1| PREDICTED: Gallus gallus similar to Hypothetica... 42 1.6
23gb|AC010985.8| Homo sapiens BAC clone RP11-521O14 from 2, comple... 42 1.6
24gb|AC132432.4| Mus musculus BAC clone RP23-213H1 from 7, complet... 42 1.6
25gb|AC134848.2| Mus musculus BAC clone RP24-196B3 from chromosome... 40 6.4
26gb|AC108844.8| Mus musculus chromosome 8, clone RP23-383L20, com... 40 6.4
27gb|AC145208.1| Homo sapiens chromosome 17, clone XXfos-85405H6, ... 40 6.4
28emb|AL161547.2|ATCHRIV47 Arabidopsis thaliana DNA chromosome 4, ... 40 6.4
29emb|AL021889.2|ATT6K21 Arabidopsis thaliana DNA chromosome 4, BA... 40 6.4
30gb|AC007472.6|AC007472 Drosophila melanogaster, chromosome 2R, r... 40 6.4
31gb|AC139530.3| Homo sapiens chromosome 17, clone RP13-1032I1, co... 40 6.4
32gb|AC105286.5| Homo sapiens BAC clone RP11-107L21 from 2, comple... 40 6.4
33emb|AL929074.5| Zebrafish DNA sequence from clone CH211-101B14, ... 40 6.4
34gb|AE003820.3| Drosophila melanogaster chromosome 2R, section 30... 40 6.4
35emb|AL772306.10| Mouse DNA sequence from clone RP23-89L15 on chr... 40 6.4

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score =  293 bits (148), Expect = 3e-76
 Identities = 369/442 (83%), Gaps = 3/442 (0%)
 Strand = Plus / Minus

                                                                          
Query: 1      gtgatgtagttgcccatgcaagagaggagatcaataacctgagacatacaaatgaggacc 60
              ||||||||||| |||||||||||||||||||||| || ||||| ||| ||||||| ||||
Sbjct: 276329 gtgatgtagtttcccatgcaagagaggagatcaacaagctgaggcatgcaaatgaagacc 276270

                                                                          
Query: 61     tcacaaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgt 120
              | || |||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| |
Sbjct: 276269 ttaccaagcaagtagaaggcctacaaatgaacagattcagtgaagtagaagagttggttt 276210

                                                                          
Query: 121    acctgcgttgggtcaacgcctgtctgcgattcgagctccgcaactaccagacaccatcgg 180
              ||||||||||||| || || |||||| |||  |||||||||||||||||| |||| || |
Sbjct: 276209 acctgcgttgggttaatgcttgtctgagatatgagctccgcaactaccaggcaccgtctg 276150

                                                                          
Query: 181    gcaaaatctctgcccgcgacctcagcacgaagctcagcccaaagtctcaggagagggcca 240
                ||||| ||||| || ||||| | || ||  || |||||||| || |  ||||||||||
Sbjct: 276149 agaaaatttctgctcgtgaccttaacaagaccctgagcccaaaatcgcgtgagagggcca 276090

                                                                          
Query: 241    aacagatgatgctcgaattt---gggtctgagcgaggccagggcgacactgaccttgaca 297
              |||   | ||||| |||| |   || || || ||||| |||||||||||||||||||| |
Sbjct: 276089 aacttctaatgctggaatatgcaggatcagaacgaggacagggcgacactgaccttgaaa 276030

                                                                          
Query: 298    gtgtctcctcggcaccttcttcccccagaagcgaagacttcgacaccgcttcgatcgaca 357
               ||  || || ||||||||||| |||||||||||||||||||||| || |||  | ||||
Sbjct: 276029 ctgcttcttctgcaccttcttcacccagaagcgaagacttcgacaacgtttcagttgaca 275970

                                                                          
Query: 358    gctcttccagcagatacagcttcctaagcaagaggccgaacctgatgcagaaactcaaga 417
              | ||||| ||||||||||||||| |  |||| ||||| || |||||||| || |||||||
Sbjct: 275969 gttcttctagcagatacagcttctttggcaaaaggcccaatctgatgcaaaagctcaaga 275910

                                    
Query: 418    agtggggaaggagcaaggatga 439
              ||||||||||| ||||||||||
Sbjct: 275909 agtggggaaggggcaaggatga 275888



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>dbj|AK072914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150I16, full
            insert sequence
          Length = 3183

 Score =  293 bits (148), Expect = 3e-76
 Identities = 369/442 (83%), Gaps = 3/442 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    gtgatgtagttgcccatgcaagagaggagatcaataacctgagacatacaaatgaggacc 60
            ||||||||||| |||||||||||||||||||||| || ||||| ||| ||||||| ||||
Sbjct: 1039 gtgatgtagtttcccatgcaagagaggagatcaacaagctgaggcatgcaaatgaagacc 1098

                                                                        
Query: 61   tcacaaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgt 120
            | || |||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| |
Sbjct: 1099 ttaccaagcaagtagaaggcctacaaatgaacagattcagtgaagtagaagagttggttt 1158

                                                                        
Query: 121  acctgcgttgggtcaacgcctgtctgcgattcgagctccgcaactaccagacaccatcgg 180
            ||||||||||||| || || |||||| |||  |||||||||||||||||| |||| || |
Sbjct: 1159 acctgcgttgggttaatgcttgtctgagatatgagctccgcaactaccaggcaccgtctg 1218

                                                                        
Query: 181  gcaaaatctctgcccgcgacctcagcacgaagctcagcccaaagtctcaggagagggcca 240
              ||||| ||||| || ||||| | || ||  || |||||||| || |  ||||||||||
Sbjct: 1219 agaaaatttctgctcgtgaccttaacaagaccctgagcccaaaatcgcgtgagagggcca 1278

                                                                        
Query: 241  aacagatgatgctcgaattt---gggtctgagcgaggccagggcgacactgaccttgaca 297
            |||   | ||||| |||| |   || || || ||||| |||||||||||||||||||| |
Sbjct: 1279 aacttctaatgctggaatatgcaggatcagaacgaggacagggcgacactgaccttgaaa 1338

                                                                        
Query: 298  gtgtctcctcggcaccttcttcccccagaagcgaagacttcgacaccgcttcgatcgaca 357
             ||  || || ||||||||||| |||||||||||||||||||||| || |||  | ||||
Sbjct: 1339 ctgcttcttctgcaccttcttcacccagaagcgaagacttcgacaacgtttcagttgaca 1398

                                                                        
Query: 358  gctcttccagcagatacagcttcctaagcaagaggccgaacctgatgcagaaactcaaga 417
            | ||||| ||||||||||||||| |  |||| ||||| || |||||||| || |||||||
Sbjct: 1399 gttcttctagcagatacagcttctttggcaaaaggcccaatctgatgcaaaagctcaaga 1458

                                  
Query: 418  agtggggaaggagcaaggatga 439
            ||||||||||| ||||||||||
Sbjct: 1459 agtggggaaggggcaaggatga 1480



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  293 bits (148), Expect = 3e-76
 Identities = 369/442 (83%), Gaps = 3/442 (0%)
 Strand = Plus / Minus

                                                                          
Query: 1      gtgatgtagttgcccatgcaagagaggagatcaataacctgagacatacaaatgaggacc 60
              ||||||||||| |||||||||||||||||||||| || ||||| ||| ||||||| ||||
Sbjct: 276329 gtgatgtagtttcccatgcaagagaggagatcaacaagctgaggcatgcaaatgaagacc 276270

                                                                          
Query: 61     tcacaaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgt 120
              | || |||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| |
Sbjct: 276269 ttaccaagcaagtagaaggcctacaaatgaacagattcagtgaagtagaagagttggttt 276210

                                                                          
Query: 121    acctgcgttgggtcaacgcctgtctgcgattcgagctccgcaactaccagacaccatcgg 180
              ||||||||||||| || || |||||| |||  |||||||||||||||||| |||| || |
Sbjct: 276209 acctgcgttgggttaatgcttgtctgagatatgagctccgcaactaccaggcaccgtctg 276150

                                                                          
Query: 181    gcaaaatctctgcccgcgacctcagcacgaagctcagcccaaagtctcaggagagggcca 240
                ||||| ||||| || ||||| | || ||  || |||||||| || |  ||||||||||
Sbjct: 276149 agaaaatttctgctcgtgaccttaacaagaccctgagcccaaaatcgcgtgagagggcca 276090

                                                                          
Query: 241    aacagatgatgctcgaattt---gggtctgagcgaggccagggcgacactgaccttgaca 297
              |||   | ||||| |||| |   || || || ||||| |||||||||||||||||||| |
Sbjct: 276089 aacttctaatgctggaatatgcaggatcagaacgaggacagggcgacactgaccttgaaa 276030

                                                                          
Query: 298    gtgtctcctcggcaccttcttcccccagaagcgaagacttcgacaccgcttcgatcgaca 357
               ||  || || ||||||||||| |||||||||||||||||||||| || |||  | ||||
Sbjct: 276029 ctgcttcttctgcaccttcttcacccagaagcgaagacttcgacaacgtttcagttgaca 275970

                                                                          
Query: 358    gctcttccagcagatacagcttcctaagcaagaggccgaacctgatgcagaaactcaaga 417
              | ||||| ||||||||||||||| |  |||| ||||| || |||||||| || |||||||
Sbjct: 275969 gttcttctagcagatacagcttctttggcaaaaggcccaatctgatgcaaaagctcaaga 275910

                                    
Query: 418    agtggggaaggagcaaggatga 439
              ||||||||||| ||||||||||
Sbjct: 275909 agtggggaaggggcaaggatga 275888



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>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 152222

 Score =  293 bits (148), Expect = 3e-76
 Identities = 369/442 (83%), Gaps = 3/442 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    gtgatgtagttgcccatgcaagagaggagatcaataacctgagacatacaaatgaggacc 60
            ||||||||||| |||||||||||||||||||||| || ||||| ||| ||||||| ||||
Sbjct: 9380 gtgatgtagtttcccatgcaagagaggagatcaacaagctgaggcatgcaaatgaagacc 9321

                                                                        
Query: 61   tcacaaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgt 120
            | || |||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| |
Sbjct: 9320 ttaccaagcaagtagaaggcctacaaatgaacagattcagtgaagtagaagagttggttt 9261

                                                                        
Query: 121  acctgcgttgggtcaacgcctgtctgcgattcgagctccgcaactaccagacaccatcgg 180
            ||||||||||||| || || |||||| |||  |||||||||||||||||| |||| || |
Sbjct: 9260 acctgcgttgggttaatgcttgtctgagatatgagctccgcaactaccaggcaccgtctg 9201

                                                                        
Query: 181  gcaaaatctctgcccgcgacctcagcacgaagctcagcccaaagtctcaggagagggcca 240
              ||||| ||||| || ||||| | || ||  || |||||||| || |  ||||||||||
Sbjct: 9200 agaaaatttctgctcgtgaccttaacaagaccctgagcccaaaatcgcgtgagagggcca 9141

                                                                        
Query: 241  aacagatgatgctcgaattt---gggtctgagcgaggccagggcgacactgaccttgaca 297
            |||   | ||||| |||| |   || || || ||||| |||||||||||||||||||| |
Sbjct: 9140 aacttctaatgctggaatatgcaggatcagaacgaggacagggcgacactgaccttgaaa 9081

                                                                        
Query: 298  gtgtctcctcggcaccttcttcccccagaagcgaagacttcgacaccgcttcgatcgaca 357
             ||  || || ||||||||||| |||||||||||||||||||||| || |||  | ||||
Sbjct: 9080 ctgcttcttctgcaccttcttcacccagaagcgaagacttcgacaacgtttcagttgaca 9021

                                                                        
Query: 358  gctcttccagcagatacagcttcctaagcaagaggccgaacctgatgcagaaactcaaga 417
            | ||||| ||||||||||||||| |  |||| ||||| || |||||||| || |||||||
Sbjct: 9020 gttcttctagcagatacagcttctttggcaaaaggcccaatctgatgcaaaagctcaaga 8961

                                  
Query: 418  agtggggaaggagcaaggatga 439
            ||||||||||| ||||||||||
Sbjct: 8960 agtggggaaggggcaaggatga 8939



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>dbj|AK099132.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023051M04, full
            insert sequence
          Length = 3065

 Score =  285 bits (144), Expect = 6e-74
 Identities = 368/442 (83%), Gaps = 3/442 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    gtgatgtagttgcccatgcaagagaggagatcaataacctgagacatacaaatgaggacc 60
            ||||||||||| |||||||||||||||||||||| || ||||| ||| ||||||| ||||
Sbjct: 924  gtgatgtagtttcccatgcaagagaggagatcaacaagctgaggcatgcaaatgaagacc 983

                                                                        
Query: 61   tcacaaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgt 120
            | || |||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| |
Sbjct: 984  ttaccaagcaagtagaaggcctacaaatgaacagattcagtgaagtagaagagttggttt 1043

                                                                        
Query: 121  acctgcgttgggtcaacgcctgtctgcgattcgagctccgcaactaccagacaccatcgg 180
            ||||||||||||| || || |||||| |||  |||||||||||||||||| |||| || |
Sbjct: 1044 acctgcgttgggttaatgcttgtctgagatatgagctccgcaactaccaggcaccgtctg 1103

                                                                        
Query: 181  gcaaaatctctgcccgcgacctcagcacgaagctcagcccaaagtctcaggagagggcca 240
              || || ||||| || ||||| | || ||  || |||||||| || |  ||||||||||
Sbjct: 1104 agaagatttctgctcgtgaccttaacaagaccctgagcccaaaatcgcgtgagagggcca 1163

                                                                        
Query: 241  aacagatgatgctcgaattt---gggtctgagcgaggccagggcgacactgaccttgaca 297
            |||   | ||||| |||| |   || || || ||||| |||||||||||||||||||| |
Sbjct: 1164 aacttctaatgctggaatatgcaggatcagaacgaggacagggcgacactgaccttgaaa 1223

                                                                        
Query: 298  gtgtctcctcggcaccttcttcccccagaagcgaagacttcgacaccgcttcgatcgaca 357
             ||  || || ||||||||||| |||||||||||||||||||||| || |||  | ||||
Sbjct: 1224 ctgcttcttctgcaccttcttcacccagaagcgaagacttcgacaacgtttcagttgaca 1283

                                                                        
Query: 358  gctcttccagcagatacagcttcctaagcaagaggccgaacctgatgcagaaactcaaga 417
            | ||||| ||||||||||||||| |  |||| ||||| || |||||||| || |||||||
Sbjct: 1284 gttcttctagcagatacagcttctttggcaaaaggcccaatctgatgcaaaagctcaaga 1343

                                  
Query: 418  agtggggaaggagcaaggatga 439
            ||||||||||| ||||||||||
Sbjct: 1344 agtggggaaggggcaaggatga 1365



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score =  274 bits (138), Expect = 2e-70
 Identities = 368/444 (82%), Gaps = 3/444 (0%)
 Strand = Plus / Minus

                                                                          
Query: 1      gtgatgtagttgcccatgcaagagaggagatcaataacctgagacatacaaatgaggacc 60
              ||||||||||| |||||||||||||||||||||| || ||||| |||  |||||| ||||
Sbjct: 258588 gtgatgtagtttcccatgcaagagaggagatcaacaagctgaggcatgtaaatgaagacc 258529

                                                                          
Query: 61     tcacaaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgt 120
              | || |||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| |
Sbjct: 258528 ttaccaagcaagtagaaggcctacaaatgaacagattcagtgaagtagaagagttggttt 258469

                                                                          
Query: 121    acctgcgttgggtcaacgcctgtctgcgattcgagctccgcaactaccagacaccatcgg 180
              ||||||||||||| || || |||||| |||  |||||||||||||||||| ||||||| |
Sbjct: 258468 acctgcgttgggttaatgcttgtctgagatatgagctccgcaactaccaggcaccatctg 258409

                                                                          
Query: 181    gcaaaatctctgcccgcgacctcagcacgaagctcagcccaaagtctcaggagagggcca 240
                ||||| ||||| ||  |||| | || ||  || |||||||| || |  ||||||||||
Sbjct: 258408 agaaaatttctgctcgttaccttaacaagaccctgagcccaaaatcgcgtgagagggcca 258349

                                                                          
Query: 241    aacagatgatgctcgaattt---gggtctgagcgaggccagggcgacactgaccttgaca 297
              |||   | ||||| |||| |   || || || ||||| |||||||||||||||||||| |
Sbjct: 258348 aacttctaatgctggaatatgcaggatcagaacgaggacagggcgacactgaccttgaaa 258289

                                                                          
Query: 298    gtgtctcctcggcaccttcttcccccagaagcgaagacttcgacaccgcttcgatcgaca 357
               ||  || || ||||||||||| ||||||||||||||||| ||||  | |||  | ||||
Sbjct: 258288 ctgcttcttctgcaccttcttcacccagaagcgaagacttggacaatgtttcagttgaca 258229

                                                                          
Query: 358    gctcttccagcagatacagcttcctaagcaagaggccgaacctgatgcagaaactcaaga 417
              | ||||| ||||||||||||||| |  |||| ||||| || |||||||| || |||||||
Sbjct: 258228 gttcttctagcagatacagcttctttggcaaaaggcccaatctgatgcaaaagctcaaga 258169

                                      
Query: 418    agtggggaaggagcaaggatgatg 441
              ||||||||||| ||||||||||||
Sbjct: 258168 agtggggaaggggcaaggatgatg 258145



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  274 bits (138), Expect = 2e-70
 Identities = 368/444 (82%), Gaps = 3/444 (0%)
 Strand = Plus / Minus

                                                                          
Query: 1      gtgatgtagttgcccatgcaagagaggagatcaataacctgagacatacaaatgaggacc 60
              ||||||||||| |||||||||||||||||||||| || ||||| |||  |||||| ||||
Sbjct: 258588 gtgatgtagtttcccatgcaagagaggagatcaacaagctgaggcatgtaaatgaagacc 258529

                                                                          
Query: 61     tcacaaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgt 120
              | || |||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| |
Sbjct: 258528 ttaccaagcaagtagaaggcctacaaatgaacagattcagtgaagtagaagagttggttt 258469

                                                                          
Query: 121    acctgcgttgggtcaacgcctgtctgcgattcgagctccgcaactaccagacaccatcgg 180
              ||||||||||||| || || |||||| |||  |||||||||||||||||| ||||||| |
Sbjct: 258468 acctgcgttgggttaatgcttgtctgagatatgagctccgcaactaccaggcaccatctg 258409

                                                                          
Query: 181    gcaaaatctctgcccgcgacctcagcacgaagctcagcccaaagtctcaggagagggcca 240
                ||||| ||||| ||  |||| | || ||  || |||||||| || |  ||||||||||
Sbjct: 258408 agaaaatttctgctcgttaccttaacaagaccctgagcccaaaatcgcgtgagagggcca 258349

                                                                          
Query: 241    aacagatgatgctcgaattt---gggtctgagcgaggccagggcgacactgaccttgaca 297
              |||   | ||||| |||| |   || || || ||||| |||||||||||||||||||| |
Sbjct: 258348 aacttctaatgctggaatatgcaggatcagaacgaggacagggcgacactgaccttgaaa 258289

                                                                          
Query: 298    gtgtctcctcggcaccttcttcccccagaagcgaagacttcgacaccgcttcgatcgaca 357
               ||  || || ||||||||||| ||||||||||||||||| ||||  | |||  | ||||
Sbjct: 258288 ctgcttcttctgcaccttcttcacccagaagcgaagacttggacaatgtttcagttgaca 258229

                                                                          
Query: 358    gctcttccagcagatacagcttcctaagcaagaggccgaacctgatgcagaaactcaaga 417
              | ||||| ||||||||||||||| |  |||| ||||| || |||||||| || |||||||
Sbjct: 258228 gttcttctagcagatacagcttctttggcaaaaggcccaatctgatgcaaaagctcaaga 258169

                                      
Query: 418    agtggggaaggagcaaggatgatg 441
              ||||||||||| ||||||||||||
Sbjct: 258168 agtggggaaggggcaaggatgatg 258145



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>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 160673

 Score =  274 bits (138), Expect = 2e-70
 Identities = 368/444 (82%), Gaps = 3/444 (0%)
 Strand = Plus / Plus

                                                                         
Query: 1     gtgatgtagttgcccatgcaagagaggagatcaataacctgagacatacaaatgaggacc 60
             ||||||||||| |||||||||||||||||||||| || ||||| |||  |||||| ||||
Sbjct: 46405 gtgatgtagtttcccatgcaagagaggagatcaacaagctgaggcatgtaaatgaagacc 46464

                                                                         
Query: 61    tcacaaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgt 120
             | || |||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| |
Sbjct: 46465 ttaccaagcaagtagaaggcctacaaatgaacagattcagtgaagtagaagagttggttt 46524

                                                                         
Query: 121   acctgcgttgggtcaacgcctgtctgcgattcgagctccgcaactaccagacaccatcgg 180
             ||||||||||||| || || |||||| |||  |||||||||||||||||| ||||||| |
Sbjct: 46525 acctgcgttgggttaatgcttgtctgagatatgagctccgcaactaccaggcaccatctg 46584

                                                                         
Query: 181   gcaaaatctctgcccgcgacctcagcacgaagctcagcccaaagtctcaggagagggcca 240
               ||||| ||||| ||  |||| | || ||  || |||||||| || |  ||||||||||
Sbjct: 46585 agaaaatttctgctcgttaccttaacaagaccctgagcccaaaatcgcgtgagagggcca 46644

                                                                         
Query: 241   aacagatgatgctcgaattt---gggtctgagcgaggccagggcgacactgaccttgaca 297
             |||   | ||||| |||| |   || || || ||||| |||||||||||||||||||| |
Sbjct: 46645 aacttctaatgctggaatatgcaggatcagaacgaggacagggcgacactgaccttgaaa 46704

                                                                         
Query: 298   gtgtctcctcggcaccttcttcccccagaagcgaagacttcgacaccgcttcgatcgaca 357
              ||  || || ||||||||||| ||||||||||||||||| ||||  | |||  | ||||
Sbjct: 46705 ctgcttcttctgcaccttcttcacccagaagcgaagacttggacaatgtttcagttgaca 46764

                                                                         
Query: 358   gctcttccagcagatacagcttcctaagcaagaggccgaacctgatgcagaaactcaaga 417
             | ||||| ||||||||||||||| |  |||| ||||| || |||||||| || |||||||
Sbjct: 46765 gttcttctagcagatacagcttctttggcaaaaggcccaatctgatgcaaaagctcaaga 46824

                                     
Query: 418   agtggggaaggagcaaggatgatg 441
             ||||||||||| ||||||||||||
Sbjct: 46825 agtggggaaggggcaaggatgatg 46848



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>gb|AC146570.6| Medicago truncatula clone mth2-103j7, complete sequence
          Length = 122623

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                         
Query: 65    aaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgtacct 124
             ||||||||||||||| || |||||||| || ||||||||||| || || || || |||||
Sbjct: 76110 aaagcaagtggaaggactccagatgaataggttcagtgaagttgaagaacttgtatacct 76051

                            
Query: 125   gcgttgggtcaacgc 139
              || ||||| |||||
Sbjct: 76050 tcgctgggttaacgc 76036



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>gb|AC026424.5| Homo sapiens chromosome 5 clone CTD-2174D2, complete sequence
          Length = 123003

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 404   gcagaaactcaagaagtggggaagg 428
             |||||||||||||||||||||||||
Sbjct: 11352 gcagaaactcaagaagtggggaagg 11376



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>gb|AC010245.4|AC010245 Homo sapiens chromosome 5 clone CTC-366B18, complete sequence
          Length = 117840

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 404   gcagaaactcaagaagtggggaagg 428
             |||||||||||||||||||||||||
Sbjct: 62109 gcagaaactcaagaagtggggaagg 62085



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>gb|AC008488.7|AC008488 Homo sapiens chromosome 5 clone CTC-424O12, complete sequence
          Length = 208117

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 404    gcagaaactcaagaagtggggaagg 428
              |||||||||||||||||||||||||
Sbjct: 175574 gcagaaactcaagaagtggggaagg 175598



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>ref|NM_113468.3| Arabidopsis thaliana CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1)
            AT3G25690 (CHUP1) mRNA, complete cds
          Length = 3379

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                        
Query: 65   aaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgtacct 124
            ||||||||||||||| || || ||||| || || |||||||| |||||  |||| || ||
Sbjct: 1215 aaagcaagtggaagggcttcaaatgaataggtttagtgaagttgaggaattggtttatct 1274

                        
Query: 125  gcgttgggtcaa 136
             |||||||||||
Sbjct: 1275 acgttgggtcaa 1286



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>dbj|AB087408.1| Arabidopsis thaliana CHUP1 mRNA for actin binding protein, complete
            cds
          Length = 3320

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                        
Query: 65   aaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgtacct 124
            ||||||||||||||| || || ||||| || || |||||||| |||||  |||| || ||
Sbjct: 1215 aaagcaagtggaagggcttcaaatgaataggtttagtgaagttgaggaattggtttatct 1274

                        
Query: 125  gcgttgggtcaa 136
             |||||||||||
Sbjct: 1275 acgttgggtcaa 1286



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>gb|AC158183.2| Selaginella moellendorffii clone JGIASXY-5D8, complete sequence
          Length = 39479

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                     
Query: 108   gaggagctggtgtacctgcgttgggtcaacgcctgtctgcgattcgagctccgcaa 163
             ||||||||||| |||||||| |||||||| || || ||||| | |||||| |||||
Sbjct: 32657 gaggagctggtctacctgcgctgggtcaatgcttgcctgcgctacgagctacgcaa 32602



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>dbj|AP001313.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:T5M7
          Length = 65177

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                         
Query: 65    aaagcaagtggaaggcctacagatgaacagattcagtgaagtagaggagctggtgtacct 124
             ||||||||||||||| || || ||||| || || |||||||| |||||  |||| || ||
Sbjct: 57161 aaagcaagtggaagggcttcaaatgaataggtttagtgaagttgaggaattggtttatct 57220

                         
Query: 125   gcgttgggtcaa 136
              |||||||||||
Sbjct: 57221 acgttgggtcaa 57232



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>ref|XM_470027.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 559

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 428 gagcaaggatgatggcagctat 449
           ||||||||||||||||||||||
Sbjct: 256 gagcaaggatgatggcagctat 277



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 428      gagcaaggatgatggcagctat 449
                ||||||||||||||||||||||
Sbjct: 33413502 gagcaaggatgatggcagctat 33413523



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>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete
             sequence
          Length = 154555

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 428   gagcaaggatgatggcagctat 449
             ||||||||||||||||||||||
Sbjct: 84609 gagcaaggatgatggcagctat 84588



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 428      gagcaaggatgatggcagctat 449
                ||||||||||||||||||||||
Sbjct: 33504012 gagcaaggatgatggcagctat 33504033



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>dbj|AK120337.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059N15, full
           insert sequence
          Length = 580

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 428 gagcaaggatgatggcagctat 449
           ||||||||||||||||||||||
Sbjct: 281 gagcaaggatgatggcagctat 302



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>ref|XM_419095.1| PREDICTED: Gallus gallus similar to Hypothetical protein D230016L03
            (LOC421009), mRNA
          Length = 6174

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 301  tctcctcggcaccttcttcccccag 325
            |||||||||| ||||||||||||||
Sbjct: 2620 tctcctcggccccttcttcccccag 2596



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>gb|AC010985.8| Homo sapiens BAC clone RP11-521O14 from 2, complete sequence
          Length = 196020

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 86   gatgaacagattcagtgaagt 106
            |||||||||||||||||||||
Sbjct: 9892 gatgaacagattcagtgaagt 9872



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>gb|AC132432.4| Mus musculus BAC clone RP23-213H1 from 7, complete sequence
          Length = 198307

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 388   agaggccgaacctgatgcagaaact 412
             |||||| ||||||||||||||||||
Sbjct: 66259 agaggcagaacctgatgcagaaact 66235



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>gb|AC134848.2| Mus musculus BAC clone RP24-196B3 from chromosome 8, complete sequence
          Length = 149146

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 418    agtggggaaggagcaaggat 437
              ||||||||||||||||||||
Sbjct: 122069 agtggggaaggagcaaggat 122088



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>gb|AC108844.8| Mus musculus chromosome 8, clone RP23-383L20, complete sequence
          Length = 194316

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 418    agtggggaaggagcaaggat 437
              ||||||||||||||||||||
Sbjct: 152619 agtggggaaggagcaaggat 152600



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>gb|AC145208.1| Homo sapiens chromosome 17, clone XXfos-85405H6, complete sequence
          Length = 37556

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   gcaaaatctctgcccgcgac 200
             ||||||||||||||||||||
Sbjct: 27872 gcaaaatctctgcccgcgac 27853



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>emb|AL161547.2|ATCHRIV47 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47
          Length = 198067

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     aagagaggagatcaataacc 39
              ||||||||||||||||||||
Sbjct: 144703 aagagaggagatcaataacc 144722



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>emb|AL021889.2|ATT6K21 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K21 (ESSA project)
          Length = 99643

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    aagagaggagatcaataacc 39
             ||||||||||||||||||||
Sbjct: 68322 aagagaggagatcaataacc 68341



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>gb|AC007472.6|AC007472 Drosophila melanogaster, chromosome 2R, region 49E-49F, BAC clone
             BACR30D19, complete sequence
          Length = 163052

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 326   aagcgaagacttcgacaccgcttc 349
             ||||||||||||||||| ||||||
Sbjct: 73421 aagcgaagacttcgacagcgcttc 73444



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>gb|AC139530.3| Homo sapiens chromosome 17, clone RP13-1032I1, complete sequence
          Length = 159125

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   gcaaaatctctgcccgcgac 200
             ||||||||||||||||||||
Sbjct: 20796 gcaaaatctctgcccgcgac 20777



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>gb|AC105286.5| Homo sapiens BAC clone RP11-107L21 from 2, complete sequence
          Length = 109231

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   ctcagcccaaagtctcagga 232
             ||||||||||||||||||||
Sbjct: 66531 ctcagcccaaagtctcagga 66512



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>emb|AL929074.5| Zebrafish DNA sequence from clone CH211-101B14, complete sequence
          Length = 165705

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 282    gacactgaccttgacagtgt 301
              ||||||||||||||||||||
Sbjct: 150629 gacactgaccttgacagtgt 150610



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>gb|AE003820.3| Drosophila melanogaster chromosome 2R, section 30 of 73 of the complete
              sequence
          Length = 263912

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 326    aagcgaagacttcgacaccgcttc 349
              ||||||||||||||||| ||||||
Sbjct: 142633 aagcgaagacttcgacagcgcttc 142656



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>emb|AL772306.10| Mouse DNA sequence from clone RP23-89L15 on chromosome 4, complete
             sequence
          Length = 210648

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 86    gatgaacagattcagtgaagtaga 109
             ||||||||| ||||||||||||||
Sbjct: 86434 gatgaacagcttcagtgaagtaga 86457


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,758,088
Number of Sequences: 3902068
Number of extensions: 3758088
Number of successful extensions: 77198
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77031
Number of HSP's gapped (non-prelim): 164
length of query: 474
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 452
effective length of database: 17,147,199,772
effective search space: 7750534296944
effective search space used: 7750534296944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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