ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal18f08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_465288.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1572 Score = 161 bits (81), Expect = 1e-36 Identities = 131/147 (89%), Gaps = 3/147 (2%) Strand = Plus / Plus Query: 1 agctgggcgggtcccacgtggcgacaccgaagcagatccgggagctgatgaaggtcgacg 60 |||||||||||||||| || ||||| || |||||||||||||||||||||||||| || | Sbjct: 907 agctgggcgggtcccatgtagcgacgcccaagcagatccgggagctgatgaaggtggatg 966 Query: 61 gcctcaccaacgacgaggtcaagagccatttgcagaagtaccgtttgcacacgtcaaggc 120 |||||||||||||||||||||||||||||||||||||||| ||| | |||||| ||| Sbjct: 967 gcctcaccaacgacgaggtcaagagccatttgcagaagtatcgtctacacacg---agga 1023 Query: 121 ggccgagctccacggcccagagcagcg 147 |||||||||| |||| |||||||||| Sbjct: 1024 ggccgagctcgacggggcagagcagcg 1050
>ref|XM_506792.1| PREDICTED Oryza sativa (japonica cultivar-group), P0476C12.20 mRNA Length = 1694 Score = 161 bits (81), Expect = 1e-36 Identities = 131/147 (89%), Gaps = 3/147 (2%) Strand = Plus / Plus Query: 1 agctgggcgggtcccacgtggcgacaccgaagcagatccgggagctgatgaaggtcgacg 60 |||||||||||||||| || ||||| || |||||||||||||||||||||||||| || | Sbjct: 1029 agctgggcgggtcccatgtagcgacgcccaagcagatccgggagctgatgaaggtggatg 1088 Query: 61 gcctcaccaacgacgaggtcaagagccatttgcagaagtaccgtttgcacacgtcaaggc 120 |||||||||||||||||||||||||||||||||||||||| ||| | |||||| ||| Sbjct: 1089 gcctcaccaacgacgaggtcaagagccatttgcagaagtatcgtctacacacg---agga 1145 Query: 121 ggccgagctccacggcccagagcagcg 147 |||||||||| |||| |||||||||| Sbjct: 1146 ggccgagctcgacggggcagagcagcg 1172
>dbj|AK101809.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066M05, full insert sequence Length = 1694 Score = 161 bits (81), Expect = 1e-36 Identities = 131/147 (89%), Gaps = 3/147 (2%) Strand = Plus / Plus Query: 1 agctgggcgggtcccacgtggcgacaccgaagcagatccgggagctgatgaaggtcgacg 60 |||||||||||||||| || ||||| || |||||||||||||||||||||||||| || | Sbjct: 1029 agctgggcgggtcccatgtagcgacgcccaagcagatccgggagctgatgaaggtggatg 1088 Query: 61 gcctcaccaacgacgaggtcaagagccatttgcagaagtaccgtttgcacacgtcaaggc 120 |||||||||||||||||||||||||||||||||||||||| ||| | |||||| ||| Sbjct: 1089 gcctcaccaacgacgaggtcaagagccatttgcagaagtatcgtctacacacg---agga 1145 Query: 121 ggccgagctccacggcccagagcagcg 147 |||||||||| |||| |||||||||| Sbjct: 1146 ggccgagctcgacggggcagagcagcg 1172
>dbj|AK064355.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B01, full insert sequence Length = 1572 Score = 161 bits (81), Expect = 1e-36 Identities = 131/147 (89%), Gaps = 3/147 (2%) Strand = Plus / Plus Query: 1 agctgggcgggtcccacgtggcgacaccgaagcagatccgggagctgatgaaggtcgacg 60 |||||||||||||||| || ||||| || |||||||||||||||||||||||||| || | Sbjct: 907 agctgggcgggtcccatgtagcgacgcccaagcagatccgggagctgatgaaggtggatg 966 Query: 61 gcctcaccaacgacgaggtcaagagccatttgcagaagtaccgtttgcacacgtcaaggc 120 |||||||||||||||||||||||||||||||||||||||| ||| | |||||| ||| Sbjct: 967 gcctcaccaacgacgaggtcaagagccatttgcagaagtatcgtctacacacg---agga 1023 Query: 121 ggccgagctccacggcccagagcagcg 147 |||||||||| |||| |||||||||| Sbjct: 1024 ggccgagctcgacggggcagagcagcg 1050
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 117 bits (59), Expect = 2e-23 Identities = 71/75 (94%) Strand = Plus / Plus Query: 21 gcgacaccgaagcagatccgggagctgatgaaggtcgacggcctcaccaacgacgaggtc 80 ||||| || |||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 13096558 gcgacgcccaagcagatccgggagctgatgaaggtggatggcctcaccaacgacgaggtc 13096617 Query: 81 aagagccatttgcag 95 ||||||||||||||| Sbjct: 13096618 aagagccatttgcag 13096632
>dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0476C12 Length = 157570 Score = 117 bits (59), Expect = 2e-23 Identities = 71/75 (94%) Strand = Plus / Plus Query: 21 gcgacaccgaagcagatccgggagctgatgaaggtcgacggcctcaccaacgacgaggtc 80 ||||| || |||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 73135 gcgacgcccaagcagatccgggagctgatgaaggtggatggcctcaccaacgacgaggtc 73194 Query: 81 aagagccatttgcag 95 ||||||||||||||| Sbjct: 73195 aagagccatttgcag 73209
>gb|AY661658.1| Sorghum bicolor clone BAC 796all, complete sequence Length = 103167 Score = 95.6 bits (48), Expect = 6e-17 Identities = 63/68 (92%) Strand = Plus / Plus Query: 21 gcgacaccgaagcagatccgggagctgatgaaggtcgacggcctcaccaacgacgaggtc 80 ||||| || ||||||||| |||||||||||||||| ||||| |||||||||||||||||| Sbjct: 61658 gcgacgccaaagcagatcagggagctgatgaaggtggacgggctcaccaacgacgaggtc 61717 Query: 81 aagagcca 88 |||||||| Sbjct: 61718 aagagcca 61725
>gb|BT016414.1| Zea mays clone Contig247 mRNA sequence Length = 1385 Score = 69.9 bits (35), Expect = 3e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 30 aagcagatccgggagctgatgaaggtcgacggcctcaccaacgacga 76 ||||||||| |||||||||||||||| ||||||||||| |||||||| Sbjct: 818 aagcagatcagggagctgatgaaggtggacggcctcacaaacgacga 864
>ref|XM_550313.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1947 Score = 63.9 bits (32), Expect = 2e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 13 cccacgtggcgacaccgaagcagatccgggagctgatgaaggtcgacggcctcaccaacg 72 |||| |||||||| ||||||||||| || |||||||||||||| || || | ||||| | Sbjct: 778 cccaagtggcgaccccgaagcagattcgcgagctgatgaaggttgatggattgaccaatg 837 Query: 73 acgaggtcaagagccatttgcagaagtaccgtttgcacac 112 | ||||| || |||||| | ||||||||| | |||||||| Sbjct: 838 atgaggtgaaaagccatctccagaagtacaggttgcacac 877
>dbj|AK109808.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-G07, full insert sequence Length = 1947 Score = 63.9 bits (32), Expect = 2e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 13 cccacgtggcgacaccgaagcagatccgggagctgatgaaggtcgacggcctcaccaacg 72 |||| |||||||| ||||||||||| || |||||||||||||| || || | ||||| | Sbjct: 778 cccaagtggcgaccccgaagcagattcgcgagctgatgaaggttgatggattgaccaatg 837 Query: 73 acgaggtcaagagccatttgcagaagtaccgtttgcacac 112 | ||||| || |||||| | ||||||||| | |||||||| Sbjct: 838 atgaggtgaaaagccatctccagaagtacaggttgcacac 877
>ref|XM_476420.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1473 Score = 60.0 bits (30), Expect = 3e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 30 aagcagatccgggagctgatgaaggtcgacggcctcaccaacgacgaggtcaagagccat 89 ||||| ||| |||||||||||||||| || || || || || ||||||||||| |||||| Sbjct: 882 aagcaaatcagggagctgatgaaggtggatggactgacaaatgacgaggtcaaaagccat 941 Query: 90 ttgcagaagtaccg 103 | ||||||||||| Sbjct: 942 cttcagaagtaccg 955
>dbj|AK070421.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048M12, full insert sequence Length = 1473 Score = 60.0 bits (30), Expect = 3e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 30 aagcagatccgggagctgatgaaggtcgacggcctcaccaacgacgaggtcaagagccat 89 ||||| ||| |||||||||||||||| || || || || || ||||||||||| |||||| Sbjct: 882 aagcaaatcagggagctgatgaaggtggatggactgacaaatgacgaggtcaaaagccat 941 Query: 90 ttgcagaagtaccg 103 | ||||||||||| Sbjct: 942 cttcagaagtaccg 955
>ref|XM_469887.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1047 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 30 aagcagatccgggagctgatgaaggtcgacggcctcaccaacgacgaggtcaagagccat 89 ||||| ||| ||||| |||||||||| || || |||||||||||||| || || |||||| Sbjct: 757 aagcaaatcagggaggtgatgaaggttgatgggctcaccaacgacgaagtgaaaagccat 816 Query: 90 ttgcagaagta 100 | |||||||| Sbjct: 817 ctccagaagta 827
>dbj|AK105625.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C11, full insert sequence Length = 1496 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 30 aagcagatccgggagctgatgaaggtcgacggcctcaccaacgacgaggtcaagagccat 89 ||||| ||| ||||| |||||||||| || || |||||||||||||| || || |||||| Sbjct: 897 aagcaaatcagggaggtgatgaaggttgatgggctcaccaacgacgaagtgaaaagccat 956 Query: 90 ttgcagaagta 100 | |||||||| Sbjct: 957 ctccagaagta 967
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 8e-04 Identities = 35/38 (92%) Strand = Plus / Plus Query: 18 gtggcgacaccgaagcagatccgggagctgatgaaggt 55 |||||||| ||||||||||| || |||||||||||||| Sbjct: 3953114 gtggcgaccccgaagcagattcgcgagctgatgaaggt 3953151 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cagcggcgccgccaccacca 162 |||||||||||||||||||| Sbjct: 3355554 cagcggcgccgccaccacca 3355573
>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013F10 Length = 163095 Score = 52.0 bits (26), Expect = 8e-04 Identities = 35/38 (92%) Strand = Plus / Plus Query: 18 gtggcgacaccgaagcagatccgggagctgatgaaggt 55 |||||||| ||||||||||| || |||||||||||||| Sbjct: 75018 gtggcgaccccgaagcagattcgcgagctgatgaaggt 75055
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.013 Identities = 51/60 (85%) Strand = Plus / Plus Query: 30 aagcagatccgggagctgatgaaggtcgacggcctcaccaacgacgaggtcaagagccat 89 ||||| ||| ||||| |||||||||| || || |||||||||||||| || || |||||| Sbjct: 31341202 aagcaaatcagggaggtgatgaaggttgatgggctcaccaacgacgaagtgaaaagccat 31341261
>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence Length = 159091 Score = 48.1 bits (24), Expect = 0.013 Identities = 51/60 (85%) Strand = Plus / Minus Query: 30 aagcagatccgggagctgatgaaggtcgacggcctcaccaacgacgaggtcaagagccat 89 ||||| ||| ||||| |||||||||| || || |||||||||||||| || || |||||| Sbjct: 154598 aagcaaatcagggaggtgatgaaggttgatgggctcaccaacgacgaagtgaaaagccat 154539
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 48.1 bits (24), Expect = 0.013 Identities = 51/60 (85%) Strand = Plus / Plus Query: 30 aagcagatccgggagctgatgaaggtcgacggcctcaccaacgacgaggtcaagagccat 89 ||||| ||| |||||||||||||||| || || || || || ||||||||||| |||||| Sbjct: 1046249 aagcaaatcagggagctgatgaaggtggatggactgacaaatgacgaggtcaaaagccat 1046308
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.013 Identities = 51/60 (85%) Strand = Plus / Plus Query: 30 aagcagatccgggagctgatgaaggtcgacggcctcaccaacgacgaggtcaagagccat 89 ||||| ||| ||||| |||||||||| || || |||||||||||||| || || |||||| Sbjct: 31431718 aagcaaatcagggaggtgatgaaggttgatgggctcaccaacgacgaagtgaaaagccat 31431777
>dbj|AP004262.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0022B05 Length = 151317 Score = 48.1 bits (24), Expect = 0.013 Identities = 51/60 (85%) Strand = Plus / Plus Query: 30 aagcagatccgggagctgatgaaggtcgacggcctcaccaacgacgaggtcaagagccat 89 ||||| ||| |||||||||||||||| || || || || || ||||||||||| |||||| Sbjct: 43837 aagcaaatcagggagctgatgaaggtggatggactgacaaatgacgaggtcaaaagccat 43896
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.050 Identities = 50/59 (84%) Strand = Plus / Plus Query: 30 aagcagatccgggagctgatgaaggtcgacggcctcaccaacgacgaggtcaagagcca 88 |||||||| |||||||||||||||| || |||||||| || || || ||||| ||||| Sbjct: 24510642 aagcagattagggagctgatgaaggttgatggcctcactaatgatgaagtcaaaagcca 24510700
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.050 Identities = 50/59 (84%) Strand = Plus / Plus Query: 30 aagcagatccgggagctgatgaaggtcgacggcctcaccaacgacgaggtcaagagcca 88 |||||||| |||||||||||||||| || |||||||| || || || ||||| ||||| Sbjct: 24438848 aagcagattagggagctgatgaaggttgatggcctcactaatgatgaagtcaaaagcca 24438906
>emb|AL844880.3|CNS08CB3 Oryza sativa chromosome 12, . BAC OSJNBb0049H14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 120071 Score = 46.1 bits (23), Expect = 0.050 Identities = 50/59 (84%) Strand = Plus / Plus Query: 30 aagcagatccgggagctgatgaaggtcgacggcctcaccaacgacgaggtcaagagcca 88 |||||||| |||||||||||||||| || |||||||| || || || ||||| ||||| Sbjct: 81673 aagcagattagggagctgatgaaggttgatggcctcactaatgatgaagtcaaaagcca 81731
>gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073E05, complete sequence Length = 178013 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 149 cgccgccaccaccactcagccc 170 |||||||||||||||||||||| Sbjct: 157722 cgccgccaccaccactcagccc 157743
>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01, complete sequence Length = 146303 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 149 cgccgccaccaccactcagccc 170 |||||||||||||||||||||| Sbjct: 113325 cgccgccaccaccactcagccc 113346
>gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0035J16, complete sequence Length = 170233 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 149 cgccgccaccaccactcagccc 170 |||||||||||||||||||||| Sbjct: 12599 cgccgccaccaccactcagccc 12620
>gb|AC079029.11| Oryza sativa chromosome 10 BAC OSJNBb0028C01 genomic sequence, complete sequence Length = 137366 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 149 cgccgccaccaccactcagccc 170 |||||||||||||||||||||| Sbjct: 74939 cgccgccaccaccactcagccc 74960
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Minus Query: 149 cgccgccaccaccactcagccc 170 |||||||||||||||||||||| Sbjct: 19702573 cgccgccaccaccactcagccc 19702552
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 149 cgccgccaccaccactcagccc 170 |||||||||||||||||||||| Sbjct: 19309250 cgccgccaccaccactcagccc 19309271 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 149 cgccgccaccaccactcagccc 170 |||||||||||||||||||||| Sbjct: 18684607 cgccgccaccaccactcagccc 18684628
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Minus Query: 149 cgccgccaccaccactcagccc 170 |||||||||||||||||||||| Sbjct: 19713849 cgccgccaccaccactcagccc 19713828
>gb|AY625680.1| Triticum aestivum MYB transcription factor (MYB80) mRNA, complete cds Length = 1199 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 aagagccatttgcagaagta 100 |||||||||||||||||||| Sbjct: 337 aagagccatttgcagaagta 356
>gb|AY450632.1| Solanum tuberosum clone plbr5 cold-stress inducible protein C17 mRNA, partial cds Length = 429 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 agcggcgccgccaccaccac 163 |||||||||||||||||||| Sbjct: 155 agcggcgccgccaccaccac 174
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 tcaagagccatttgcagaag 98 |||||||||||||||||||| Sbjct: 3572849 tcaagagccatttgcagaag 3572868
>emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete genome; segment 1/29 Length = 299050 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 cctcaccaacgacgaggtca 81 |||||||||||||||||||| Sbjct: 275698 cctcaccaacgacgaggtca 275717
>gb|U10405.2|SPU10405 Streptomyces purpurascens rhodomycin gene cluster, partial sequence Length = 12970 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 ccaacgacgaggtcaagagc 86 |||||||||||||||||||| Sbjct: 11233 ccaacgacgaggtcaagagc 11252
>dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0701D05 Length = 172161 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cagcggcgccgccaccacca 162 |||||||||||||||||||| Sbjct: 33924 cagcggcgccgccaccacca 33943
>dbj|AK121956.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107M13, full insert sequence Length = 3640 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cagcggcgccgccaccacca 162 |||||||||||||||||||| Sbjct: 95 cagcggcgccgccaccacca 114
>dbj|AK067313.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106O15, full insert sequence Length = 1429 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cagcggcgccgccaccacca 162 |||||||||||||||||||| Sbjct: 173 cagcggcgccgccaccacca 192
>gb|AF300971.2| Oryza sativa DRE binding protein 2 mRNA, complete cds Length = 1375 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cagcggcgccgccaccacca 162 |||||||||||||||||||| Sbjct: 106 cagcggcgccgccaccacca 125
>gb|U69633.1|STU69633 Solanum tuberosum cold-stress inducible protein (C17) gene, complete cds Length = 6251 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 agcggcgccgccaccaccac 163 |||||||||||||||||||| Sbjct: 4029 agcggcgccgccaccaccac 4048
>dbj|AP004937.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT08M07, TM0096a, complete sequence Length = 24390 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 gcggcgccgccaccaccact 164 |||||||||||||||||||| Sbjct: 15866 gcggcgccgccaccaccact 15885
>emb|AL627211.13| Mouse DNA sequence from clone RP23-104G20 on chromosome 4, complete sequence Length = 216944 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 cgccgccaccaccactcagc 168 |||||||||||||||||||| Sbjct: 207856 cgccgccaccaccactcagc 207875
>emb|AL607108.17| Mouse DNA sequence from clone RP23-42F6 on chromosome 11, complete sequence Length = 202842 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gccgccaccaccactcagcc 169 |||||||||||||||||||| Sbjct: 62026 gccgccaccaccactcagcc 62007 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,669,096 Number of Sequences: 3902068 Number of extensions: 1669096 Number of successful extensions: 37721 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37333 Number of HSP's gapped (non-prelim): 388 length of query: 240 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 218 effective length of database: 17,147,199,772 effective search space: 3738089550296 effective search space used: 3738089550296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
