ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal18f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GCSP_TROWT (Q83GV1) Glycine dehydrogenase [decarboxylating] (EC ... 28 8.0
2GCSP_TROW8 (Q83IA7) Glycine dehydrogenase [decarboxylating] (EC ... 28 8.0

>GCSP_TROWT (Q83GV1) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)|
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 968

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 135 RRAMDRALDPNYDPDDSPAANSNAPPTSE 221
           R  +DR +D  YDPD++P     AP T E
Sbjct: 893 RAEIDRVIDKTYDPDNNPL--KRAPHTLE 919



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>GCSP_TROW8 (Q83IA7) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)|
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 968

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 135 RRAMDRALDPNYDPDDSPAANSNAPPTSE 221
           R  +DR +D  YDPD++P     AP T E
Sbjct: 893 RAEIDRVIDKTYDPDNNPL--KRAPHTLE 919


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,576,521
Number of Sequences: 219361
Number of extensions: 158930
Number of successful extensions: 506
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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