ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal18e24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.018
2dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.018
3dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.018
4dbj|AK073271.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.018
5dbj|AK061556.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.018
6ref|XM_743216.1| Aspergillus fumigatus Af293 flavin-containing m... 42 0.29
7gb|AC127565.5| Mus musculus BAC clone RP24-292K9 from chromosome... 38 4.5
8gb|AC164398.8| Mus musculus chromosome 7, clone RP23-307M24, com... 38 4.5
9gb|AY496910.1| Glycine max cytosolic malate dehydrogenase mRNA, ... 38 4.5
10ref|XM_720185.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 38 4.5
11gb|AC140952.1| Pan troglodytes BAC clone RP43-22I12 from 7, comp... 38 4.5
12emb|BX927347.12| Zebrafish DNA sequence from clone CH211-110D14 ... 38 4.5
13emb|AL391815.6| Human DNA sequence from clone RP11-223L24 on chr... 38 4.5
14emb|BX296567.23| Zebrafish DNA sequence from clone DKEY-261P22 i... 38 4.5
15gb|AC090675.10| Homo sapiens 12 BAC RP11-681A17 (Roswell Park Ca... 38 4.5
16dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
17gb|AC107739.9| Mus musculus chromosome 7, clone RP23-345M1, comp... 38 4.5
18gb|AC151799.2| Pan troglodytes BAC clone RP43-44D10 from chromos... 38 4.5
19dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.018
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                      
Query: 46      tcattgagagttcacaagggcaaaatgtgtacccagctgatcaacaaatgctcat 100
               ||||||||||| | || ||||| ||||||||||| || ||||| || ||||||||
Sbjct: 8732139 tcattgagagtactcaggggcagaatgtgtacccggcggatcagcagatgctcat 8732193



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>dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OJ1001_B06
          Length = 134810

 Score = 46.1 bits (23), Expect = 0.018
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                   
Query: 46   tcattgagagttcacaagggcaaaatgtgtacccagctgatcaacaaatgctcat 100
            ||||||||||| | || ||||| ||||||||||| || ||||| || ||||||||
Sbjct: 2460 tcattgagagtactcaggggcagaatgtgtacccggcggatcagcagatgctcat 2514



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>dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0037N01
          Length = 174085

 Score = 46.1 bits (23), Expect = 0.018
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                     
Query: 46     tcattgagagttcacaagggcaaaatgtgtacccagctgatcaacaaatgctcat 100
              ||||||||||| | || ||||| ||||||||||| || ||||| || ||||||||
Sbjct: 147121 tcattgagagtactcaggggcagaatgtgtacccggcggatcagcagatgctcat 147175



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>dbj|AK073271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029B07, full
           insert sequence
          Length = 1629

 Score = 46.1 bits (23), Expect = 0.018
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                  
Query: 46  tcattgagagttcacaagggcaaaatgtgtacccagctgatcaacaaatgctcat 100
           ||||||||||| | || ||||| ||||||||||| || ||||| || ||||||||
Sbjct: 235 tcattgagagtactcaggggcagaatgtgtacccggcggatcagcagatgctcat 289



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>dbj|AK061556.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-C08, full
           insert sequence
          Length = 1567

 Score = 46.1 bits (23), Expect = 0.018
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                  
Query: 46  tcattgagagttcacaagggcaaaatgtgtacccagctgatcaacaaatgctcat 100
           ||||||||||| | || ||||| ||||||||||| || ||||| || ||||||||
Sbjct: 200 tcattgagagtactcaggggcagaatgtgtacccggcggatcagcagatgctcat 254



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>ref|XM_743216.1| Aspergillus fumigatus Af293 flavin-containing monooxygenase
            (Afu5g00310) partial mRNA
          Length = 1908

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 17   cgccgacaaggtttctgatgt 37
            |||||||||||||||||||||
Sbjct: 1719 cgccgacaaggtttctgatgt 1739



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>gb|AC127565.5| Mus musculus BAC clone RP24-292K9 from chromosome 7, complete sequence
          Length = 188650

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 35    tgtaaagaagctcattgag 53
             |||||||||||||||||||
Sbjct: 24456 tgtaaagaagctcattgag 24474



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>gb|AC164398.8| Mus musculus chromosome 7, clone RP23-307M24, complete sequence
          Length = 196756

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 59    acaagggcaaaatgtgtacccag 81
             ||||||| |||||||||||||||
Sbjct: 85691 acaaggggaaaatgtgtacccag 85713



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>gb|AY496910.1| Glycine max cytosolic malate dehydrogenase mRNA, complete cds
          Length = 1312

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 25  aggtttctgatgtaaagaa 43
           |||||||||||||||||||
Sbjct: 576 aggtttctgatgtaaagaa 594



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>ref|XM_720185.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein
          (PY04902) partial mRNA
          Length = 1509

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 32 tgatgtaaagaagctcatt 50
          |||||||||||||||||||
Sbjct: 18 tgatgtaaagaagctcatt 36



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>gb|AC140952.1| Pan troglodytes BAC clone RP43-22I12 from 7, complete sequence
          Length = 170350

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 27     gtttctgatgtaaagaagc 45
              |||||||||||||||||||
Sbjct: 145469 gtttctgatgtaaagaagc 145487



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>emb|BX927347.12| Zebrafish DNA sequence from clone CH211-110D14 in linkage group 21,
             complete sequence
          Length = 75388

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 55    gttcacaagggcaaaatgt 73
             |||||||||||||||||||
Sbjct: 72213 gttcacaagggcaaaatgt 72195



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>emb|AL391815.6| Human DNA sequence from clone RP11-223L24 on chromosome 6, complete
             sequence
          Length = 61274

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 78    ccagctgatcaacaaatgc 96
             |||||||||||||||||||
Sbjct: 20928 ccagctgatcaacaaatgc 20910



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>emb|BX296567.23| Zebrafish DNA sequence from clone DKEY-261P22 in linkage group 15,
              complete sequence
          Length = 224041

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 55     gttcacaagggcaaaatgt 73
              |||||||||||||||||||
Sbjct: 194515 gttcacaagggcaaaatgt 194497



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>gb|AC090675.10| Homo sapiens 12 BAC RP11-681A17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 174044

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 56     ttcacaagggcaaaatgtg 74
              |||||||||||||||||||
Sbjct: 123737 ttcacaagggcaaaatgtg 123755



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 24       aaggtttctgatgtaaaga 42
                |||||||||||||||||||
Sbjct: 18424563 aaggtttctgatgtaaaga 18424545



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>gb|AC107739.9| Mus musculus chromosome 7, clone RP23-345M1, complete sequence
          Length = 205227

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 59     acaagggcaaaatgtgtacccag 81
              ||||||| |||||||||||||||
Sbjct: 195250 acaaggggaaaatgtgtacccag 195272



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>gb|AC151799.2| Pan troglodytes BAC clone RP43-44D10 from chromosome 7, complete
             sequence
          Length = 183888

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 27    gtttctgatgtaaagaagc 45
             |||||||||||||||||||
Sbjct: 99663 gtttctgatgtaaagaagc 99645



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>dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1058_B11
          Length = 102824

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 24    aaggtttctgatgtaaaga 42
             |||||||||||||||||||
Sbjct: 16411 aaggtttctgatgtaaaga 16393


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 848,620
Number of Sequences: 3902068
Number of extensions: 848620
Number of successful extensions: 51666
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51612
Number of HSP's gapped (non-prelim): 54
length of query: 101
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 80
effective length of database: 17,151,101,840
effective search space: 1372088147200
effective search space used: 1372088147200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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