ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal18e20 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ298132.1|HVU298132 Hordeum vulgare mRNA for polyamine oxidase (bpao2 gene) Length = 1700 Score = 670 bits (338), Expect = 0.0 Identities = 355/360 (98%), Gaps = 2/360 (0%) Strand = Plus / Plus Query: 1 cgtcgtcgccaacgtctacangggaggagcggtggcctctacgacgaggagttcgtgcag 60 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 443 cgtcgtcgccaacgtctacaagga--gagcggtggcctctacgacgaggagttcgtgcag 500 Query: 61 aagagaatggaccgcgccgacgaggtggaagagctgggcggcaagttcgccgcgaagttg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 501 aagagaatggaccgcgccgacgaggtggaagagctgggcggcaagttcgccgcgaagttg 560 Query: 121 gatcccagcggccgcgacgacatctccatcttggccatgcagcgcctcttcaaccaccag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 561 gatcccagcggccgcgacgacatctccatcttggccatgcagcgcctcttcaaccaccag 620 Query: 181 ccgaacgggccgacgacgccggtggacatggcgctggactactacaagtacgactacgag 240 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 621 ccgaacgggccgacgacaccggtggacatggcgctggactactacaagtacgactacgag 680 Query: 241 tttgccgagccgccgcgcgtcaccagcctgcagggcaccgagccgacggccaccttcgcc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 681 tttgccgagccgccgcgcgtcaccagcctgcagggcaccgagccgacggccaccttcgcc 740 Query: 301 gacttcggggacgacgccaactttgtcgccgatcagcgcggattcgagaccatcatatat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 741 gacttcggggacgacgccaactttgtcgccgatcagcgcggattcgagaccatcatatat 800
>emb|AJ304793.1|HVU304793 Hordeum vulgare bpao2 gene for flavin containing polyamine oxidase, exons 1-8 Length = 4217 Score = 357 bits (180), Expect = 2e-95 Identities = 183/184 (99%) Strand = Plus / Plus Query: 177 ccagccgaacgggccgacgacgccggtggacatggcgctggactactacaagtacgacta 236 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1306 ccagccgaacgggccgacgacaccggtggacatggcgctggactactacaagtacgacta 1365 Query: 237 cgagtttgccgagccgccgcgcgtcaccagcctgcagggcaccgagccgacggccacctt 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1366 cgagtttgccgagccgccgcgcgtcaccagcctgcagggcaccgagccgacggccacctt 1425 Query: 297 cgccgacttcggggacgacgccaactttgtcgccgatcagcgcggattcgagaccatcat 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1426 cgccgacttcggggacgacgccaactttgtcgccgatcagcgcggattcgagaccatcat 1485 Query: 357 atat 360 |||| Sbjct: 1486 atat 1489 Score = 295 bits (149), Expect = 5e-77 Identities = 149/149 (100%) Strand = Plus / Plus Query: 28 agcggtggcctctacgacgaggagttcgtgcagaagagaatggaccgcgccgacgaggtg 87 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1032 agcggtggcctctacgacgaggagttcgtgcagaagagaatggaccgcgccgacgaggtg 1091 Query: 88 gaagagctgggcggcaagttcgccgcgaagttggatcccagcggccgcgacgacatctcc 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1092 gaagagctgggcggcaagttcgccgcgaagttggatcccagcggccgcgacgacatctcc 1151 Query: 148 atcttggccatgcagcgcctcttcaacca 176 ||||||||||||||||||||||||||||| Sbjct: 1152 atcttggccatgcagcgcctcttcaacca 1180 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 cgtcgtcgccaacgtctaca 20 |||||||||||||||||||| Sbjct: 519 cgtcgtcgccaacgtctaca 538
>emb|AJ002204.1|ZMJ002204 Zea mays mRNA for flavin containing polyamine oxidase (PAO) Length = 1750 Score = 165 bits (83), Expect = 1e-37 Identities = 173/203 (85%) Strand = Plus / Plus Query: 136 gacgacatctccatcttggccatgcagcgcctcttcaaccaccagccgaacgggccgacg 195 |||||||| || ||| | ||||||||||||||| | | |||||||||||||||||| || Sbjct: 559 gacgacatgtctatccttgccatgcagcgcctcaacgaacaccagccgaacgggccggcg 618 Query: 196 acgccggtggacatggcgctggactactacaagtacgactacgagtttgccgagccgccg 255 |||||||||||||||| | ||||||||||||||| |||||||||||| || ||||||||| Sbjct: 619 acgccggtggacatggtggtggactactacaagttcgactacgagttcgcggagccgccg 678 Query: 256 cgcgtcaccagcctgcagggcaccgagccgacggccaccttcgccgacttcggggacgac 315 ||||| |||||||||||| ||||| ||| || |||||| ||||||||| |||||| Sbjct: 679 cgcgtgaccagcctgcagaacaccgtgcctctcgcgaccttcagcgacttcggcgacgac 738 Query: 316 gccaactttgtcgccgatcagcg 338 | | |||| |||||||| ||||| Sbjct: 739 gtctacttcgtcgccgaccagcg 761
>gb|AY107888.1| Zea mays PCO061908 mRNA sequence Length = 1895 Score = 149 bits (75), Expect = 7e-33 Identities = 172/203 (84%), Gaps = 1/203 (0%) Strand = Plus / Plus Query: 136 gacgacatctccatcttggccatgcagcgcctcttcaaccaccagccgaacgggccgacg 195 |||||||| || ||| | ||||||||||||||| | | |||||||||||||||||| || Sbjct: 566 gacgacatgtctatccttgccatgcagcgcctcaacgaacaccagccgaacgggccggcg 625 Query: 196 acgccggtggacatggcgctggactactacaagtacgactacgagtttgccgagccgccg 255 |||||||||||||||| | ||||||||||||||| |||||||||||| || || |||||| Sbjct: 626 acgccggtggacatggtggtggactactacaagttcgactacgagttcgcgga-ccgccg 684 Query: 256 cgcgtcaccagcctgcagggcaccgagccgacggccaccttcgccgacttcggggacgac 315 ||||| |||||||||||| ||||| ||| || |||||| ||||||||| |||||| Sbjct: 685 cgcgtgaccagcctgcagaacaccgtgcctctcgcgaccttcagcgacttcggcgacgac 744 Query: 316 gccaactttgtcgccgatcagcg 338 | | |||| |||||||| ||||| Sbjct: 745 gtctacttcgtcgccgaccagcg 767
>emb|AJ251019.1|ZMA251019 Zea mays pao gene for polyamine oxidase, exons 1-8, clone pMPAO3 Length = 3384 Score = 147 bits (74), Expect = 3e-32 Identities = 140/162 (86%) Strand = Plus / Plus Query: 177 ccagccgaacgggccgacgacgccggtggacatggcgctggactactacaagtacgacta 236 |||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||||| Sbjct: 1990 ccagccgaacgggccggcgacgccggtggacatggtggtggactactacaagttcgacta 2049 Query: 237 cgagtttgccgagccgccgcgcgtcaccagcctgcagggcaccgagccgacggccacctt 296 |||||| || |||||||||||||| |||||||||||| ||||| ||| || ||||| Sbjct: 2050 cgagttcgcggagccgccgcgcgtgaccagcctgcagaacaccgtgcctctcgcgacctt 2109 Query: 297 cgccgacttcggggacgacgccaactttgtcgccgatcagcg 338 | ||||||||| ||||||| | |||| |||||||| ||||| Sbjct: 2110 cagcgacttcggcgacgacgtctacttcgtcgccgaccagcg 2151
>emb|AJ251568.1|ZMA251568 Zea mays PAO gene for flavin containing polyamine oxidase, exons 1-8 Length = 4096 Score = 147 bits (74), Expect = 3e-32 Identities = 140/162 (86%) Strand = Plus / Plus Query: 177 ccagccgaacgggccgacgacgccggtggacatggcgctggactactacaagtacgacta 236 |||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||||| Sbjct: 2702 ccagccgaacgggccggcgacgccggtggacatggtggtggactactacaagttcgacta 2761 Query: 237 cgagtttgccgagccgccgcgcgtcaccagcctgcagggcaccgagccgacggccacctt 296 |||||| || |||||||||||||| |||||||||||| ||||| ||| || ||||| Sbjct: 2762 cgagttcgcggagccgccgcgcgtgaccagcctgcagaacaccgtgcctctcgcgacctt 2821 Query: 297 cgccgacttcggggacgacgccaactttgtcgccgatcagcg 338 | ||||||||| ||||||| | |||| |||||||| ||||| Sbjct: 2822 cagcgacttcggcgacgacgtctacttcgtcgccgaccagcg 2863
>emb|AJ251018.1|ZMA251018 Zea mays pao gene for polyamine oxidase, exons 1-8, clone pMPAO2 Length = 4344 Score = 147 bits (74), Expect = 3e-32 Identities = 140/162 (86%) Strand = Plus / Plus Query: 177 ccagccgaacgggccgacgacgccggtggacatggcgctggactactacaagtacgacta 236 |||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||||| Sbjct: 2938 ccagccgaacgggccggcgacgccggtggacatggtggtggactactacaagttcgacta 2997 Query: 237 cgagtttgccgagccgccgcgcgtcaccagcctgcagggcaccgagccgacggccacctt 296 |||||| || |||||||||||||| |||||||||||| ||||| ||| || ||||| Sbjct: 2998 cgagttcgcggagccgccgcgcgtgaccagcctgcagaacaccgtgcctctcgcgacctt 3057 Query: 297 cgccgacttcggggacgacgccaactttgtcgccgatcagcg 338 | ||||||||| ||||||| | |||| |||||||| ||||| Sbjct: 3058 cagcgacttcggcgacgacgtctacttcgtcgccgaccagcg 3099
>emb|AJ298131.1|HVU298131 Hordeum vulgare mRNA for polyamine oxidase (bpao1 gene) Length = 1583 Score = 139 bits (70), Expect = 7e-30 Identities = 121/138 (87%) Strand = Plus / Plus Query: 136 gacgacatctccatcttggccatgcagcgcctcttcaaccaccagccgaacgggccgacg 195 |||||||| |||||| | |||||||| |||||| | ||||| ||| |||||||||||| Sbjct: 523 gacgacatgtccatcctcgccatgcaacgcctcaacgaccacttgcccaacgggccgacg 582 Query: 196 acgccggtggacatggcgctggactactacaagtacgactacgagtttgccgagccgccg 255 ||||||||||||||| |||||||||| |||| ||||||||||||| || ||||||||| Sbjct: 583 tcgccggtggacatggttctggactacttcaagcacgactacgagttcgcggagccgccg 642 Query: 256 cgcgtcaccagcctgcag 273 |||||||||||||||||| Sbjct: 643 cgcgtcaccagcctgcag 660
>emb|AJ304792.1|HVU304792 Hordeum vulgare bpao1 gene for flavin containing polyamine oxidase, exons 1-9 Length = 2942 Score = 123 bits (62), Expect = 4e-25 Identities = 83/90 (92%) Strand = Plus / Plus Query: 184 aacgggccgacgacgccggtggacatggcgctggactactacaagtacgactacgagttt 243 |||||||||||| ||||||||||||||| |||||||||| |||| ||||||||||||| Sbjct: 1402 aacgggccgacgtcgccggtggacatggttctggactacttcaagcacgactacgagttc 1461 Query: 244 gccgagccgccgcgcgtcaccagcctgcag 273 || ||||||||||||||||||||||||||| Sbjct: 1462 gcggagccgccgcgcgtcaccagcctgcag 1491
>ref|XM_450667.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1473 Score = 113 bits (57), Expect = 4e-22 Identities = 126/149 (84%) Strand = Plus / Plus Query: 184 aacgggccgacgacgccggtggacatggcgctggactactacaagtacgactacgagttt 243 ||||| ||| || ||||||||||||||||| ||||||||| || |||||||||||||| Sbjct: 511 aacggcccgtcgtcgccggtggacatggcggtggactacttcacctacgactacgagttc 570 Query: 244 gccgagccgccgcgcgtcaccagcctgcagggcaccgagccgacggccaccttcgccgac 303 ||||||||||||||||| |||||||||||| ||||| || |||||||| ||||| Sbjct: 571 gccgagccgccgcgcgtgaccagcctgcagaacaccgttcccctccccaccttcaccgac 630 Query: 304 ttcggggacgacgccaactttgtcgccga 332 ||||| |||||| || |||| |||||||| Sbjct: 631 ttcggagacgacacctacttcgtcgccga 659
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 113 bits (57), Expect = 4e-22 Identities = 126/149 (84%) Strand = Plus / Minus Query: 184 aacgggccgacgacgccggtggacatggcgctggactactacaagtacgactacgagttt 243 ||||| ||| || ||||||||||||||||| ||||||||| || |||||||||||||| Sbjct: 12094070 aacggcccgtcgtcgccggtggacatggcggtggactacttcacctacgactacgagttc 12094011 Query: 244 gccgagccgccgcgcgtcaccagcctgcagggcaccgagccgacggccaccttcgccgac 303 ||||||||||||||||| |||||||||||| ||||| || |||||||| ||||| Sbjct: 12094010 gccgagccgccgcgcgtgaccagcctgcagaacaccgttcccctccccaccttcaccgac 12093951 Query: 304 ttcggggacgacgccaactttgtcgccga 332 ||||| |||||| || |||| |||||||| Sbjct: 12093950 ttcggagacgacacctacttcgtcgccga 12093922 Score = 95.6 bits (48), Expect = 9e-17 Identities = 78/88 (88%) Strand = Plus / Minus Query: 184 aacgggccgacgacgccggtggacatggcgctggactactacaagtacgactacgagttt 243 ||||| ||| || ||||||||||||||| | ||||||||| || |||||||||||||| Sbjct: 12114513 aacggcccgtcgtcgccggtggacatggtggtggactacttcacctacgactacgagttc 12114454 Query: 244 gccgagccgccgcgcgtcaccagcctgc 271 ||||||||||||||||| |||||||||| Sbjct: 12114453 gccgagccgccgcgcgtgaccagcctgc 12114426
>dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1759_F09 Length = 149501 Score = 113 bits (57), Expect = 4e-22 Identities = 126/149 (84%) Strand = Plus / Minus Query: 184 aacgggccgacgacgccggtggacatggcgctggactactacaagtacgactacgagttt 243 ||||| ||| || ||||||||||||||||| ||||||||| || |||||||||||||| Sbjct: 5529 aacggcccgtcgtcgccggtggacatggcggtggactacttcacctacgactacgagttc 5470 Query: 244 gccgagccgccgcgcgtcaccagcctgcagggcaccgagccgacggccaccttcgccgac 303 ||||||||||||||||| |||||||||||| ||||| || |||||||| ||||| Sbjct: 5469 gccgagccgccgcgcgtgaccagcctgcagaacaccgttcccctccccaccttcaccgac 5410 Query: 304 ttcggggacgacgccaactttgtcgccga 332 ||||| |||||| || |||| |||||||| Sbjct: 5409 ttcggagacgacacctacttcgtcgccga 5381 Score = 95.6 bits (48), Expect = 9e-17 Identities = 78/88 (88%) Strand = Plus / Minus Query: 184 aacgggccgacgacgccggtggacatggcgctggactactacaagtacgactacgagttt 243 ||||| ||| || ||||||||||||||| | ||||||||| || |||||||||||||| Sbjct: 25972 aacggcccgtcgtcgccggtggacatggtggtggactacttcacctacgactacgagttc 25913 Query: 244 gccgagccgccgcgcgtcaccagcctgc 271 ||||||||||||||||| |||||||||| Sbjct: 25912 gccgagccgccgcgcgtgaccagcctgc 25885
>dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0564H06 Length = 146823 Score = 113 bits (57), Expect = 4e-22 Identities = 126/149 (84%) Strand = Plus / Minus Query: 184 aacgggccgacgacgccggtggacatggcgctggactactacaagtacgactacgagttt 243 ||||| ||| || ||||||||||||||||| ||||||||| || |||||||||||||| Sbjct: 28449 aacggcccgtcgtcgccggtggacatggcggtggactacttcacctacgactacgagttc 28390 Query: 244 gccgagccgccgcgcgtcaccagcctgcagggcaccgagccgacggccaccttcgccgac 303 ||||||||||||||||| |||||||||||| ||||| || |||||||| ||||| Sbjct: 28389 gccgagccgccgcgcgtgaccagcctgcagaacaccgttcccctccccaccttcaccgac 28330 Query: 304 ttcggggacgacgccaactttgtcgccga 332 ||||| |||||| || |||| |||||||| Sbjct: 28329 ttcggagacgacacctacttcgtcgccga 28301 Score = 95.6 bits (48), Expect = 9e-17 Identities = 78/88 (88%) Strand = Plus / Minus Query: 184 aacgggccgacgacgccggtggacatggcgctggactactacaagtacgactacgagttt 243 ||||| ||| || ||||||||||||||| | ||||||||| || |||||||||||||| Sbjct: 48892 aacggcccgtcgtcgccggtggacatggtggtggactacttcacctacgactacgagttc 48833 Query: 244 gccgagccgccgcgcgtcaccagcctgc 271 ||||||||||||||||| |||||||||| Sbjct: 48832 gccgagccgccgcgcgtgaccagcctgc 48805
>ref|XM_450669.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1588 Score = 97.6 bits (49), Expect = 2e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 175 caccagccgaacgggccgacgacgccggtggacatggcgctggactactacaagtacgac 234 |||| ||| ||||| ||| || ||||||||||||||| | ||||||||| || |||||| Sbjct: 535 cacctgcccaacggcccgtcgtcgccggtggacatggtggtggactacttcacctacgac 594 Query: 235 tacgagtttgccgagccgccgcgcgtcaccagcctgc 271 |||||||| ||||||||||||||||| |||||||||| Sbjct: 595 tacgagttcgccgagccgccgcgcgtgaccagcctgc 631
>dbj|AK069392.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014L10, full insert sequence Length = 1587 Score = 97.6 bits (49), Expect = 2e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 175 caccagccgaacgggccgacgacgccggtggacatggcgctggactactacaagtacgac 234 |||| ||| ||||| ||| || ||||||||||||||| | ||||||||| || |||||| Sbjct: 534 cacctgcccaacggcccgtcgtcgccggtggacatggtggtggactacttcacctacgac 593 Query: 235 tacgagtttgccgagccgccgcgcgtcaccagcctgc 271 |||||||| ||||||||||||||||| |||||||||| Sbjct: 594 tacgagttcgccgagccgccgcgcgtgaccagcctgc 630
>ref|XM_470573.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1044 Score = 73.8 bits (37), Expect = 3e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 197 cgccggtggacatggcgctggactactacaagtacgactacgagtttgccgagccgccgc 256 ||||||| ||||||| | | ||||||||| ||| |||||||||| ||||||||||||| Sbjct: 59 cgccggtagacatggtggtagactactacctgtatgactacgagtacgccgagccgccgc 118 Query: 257 gcgtcaccagcctgcag 273 |||| |||||||||||| Sbjct: 119 gcgtgaccagcctgcag 135
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 73.8 bits (37), Expect = 3e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 197 cgccggtggacatggcgctggactactacaagtacgactacgagtttgccgagccgccgc 256 ||||||| ||||||| | | ||||||||| ||| |||||||||| ||||||||||||| Sbjct: 4845960 cgccggtagacatggtggtagactactacctgtatgactacgagtacgccgagccgccgc 4846019 Query: 257 gcgtcaccagcctgcag 273 |||| |||||||||||| Sbjct: 4846020 gcgtgaccagcctgcag 4846036
>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16, complete sequence Length = 159092 Score = 73.8 bits (37), Expect = 3e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 197 cgccggtggacatggcgctggactactacaagtacgactacgagtttgccgagccgccgc 256 ||||||| ||||||| | | ||||||||| ||| |||||||||| ||||||||||||| Sbjct: 149587 cgccggtagacatggtggtagactactacctgtatgactacgagtacgccgagccgccgc 149528 Query: 257 gcgtcaccagcctgcag 273 |||| |||||||||||| Sbjct: 149527 gcgtgaccagcctgcag 149511
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 73.8 bits (37), Expect = 3e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 197 cgccggtggacatggcgctggactactacaagtacgactacgagtttgccgagccgccgc 256 ||||||| ||||||| | | ||||||||| ||| |||||||||| ||||||||||||| Sbjct: 4845175 cgccggtagacatggtggtagactactacctgtatgactacgagtacgccgagccgccgc 4845234 Query: 257 gcgtcaccagcctgcag 273 |||| |||||||||||| Sbjct: 4845235 gcgtgaccagcctgcag 4845251
>gb|AY337514.1| Myxococcus xanthus isolate nla27 mutant NtrC-like activator gene, partial cds Length = 1521 Score = 46.1 bits (23), Expect = 0.078 Identities = 23/23 (100%) Strand = Plus / Minus Query: 79 gacgaggtggaagagctgggcgg 101 ||||||||||||||||||||||| Sbjct: 255 gacgaggtggaagagctgggcgg 233
>gb|AY131228.1| Streptomyces tenebrarius H6 AprG1 (aprg1), AprG2 (aprg2), and AprM (aprm) genes, complete cds Length = 3764 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 cctctacgacgaggagttcg 55 |||||||||||||||||||| Sbjct: 2339 cctctacgacgaggagttcg 2358
>ref|XM_324221.1| Neurospora crassa OR74A hypothetical protein (NCU04865.1) partial mRNA Length = 7725 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 cgactacgagtttgccgagc 250 |||||||||||||||||||| Sbjct: 5400 cgactacgagtttgccgagc 5419
>ref|XM_954029.1| Neurospora crassa OR74A hypothetical protein (NCU04865.1) partial mRNA Length = 7725 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 cgactacgagtttgccgagc 250 |||||||||||||||||||| Sbjct: 5400 cgactacgagtttgccgagc 5419
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 gccgcgcgtcaccagcctgc 271 |||||||||||||||||||| Sbjct: 842703 gccgcgcgtcaccagcctgc 842684
>gb|AC026583.10| Homo sapiens chromosome 15, clone RP11-20C17, complete sequence Length = 175472 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 cagcctgcagggcaccgagc 283 |||||||||||||||||||| Sbjct: 133140 cagcctgcagggcaccgagc 133121
>gb|AF399008.1|AF399008 Giardia intestinalis strain WB1267 cysteine protease gene, complete cds Length = 3205 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 cctctacgacgaggagttcg 55 |||||||||||||||||||| Sbjct: 840 cctctacgacgaggagttcg 859
>ref|NM_031678.1| Rattus norvegicus period homolog 2 (Drosophila) (Per2), mRNA Length = 5761 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 agcctgcagggcaccgagcc 284 |||||||||||||||||||| Sbjct: 2348 agcctgcagggcaccgagcc 2329
>gb|U68299.1|MCU68299 Mouse cytomegalovirus 1 complete genomic sequence Length = 230278 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gccatgcagcgcctcttcaa 173 |||||||||||||||||||| Sbjct: 146481 gccatgcagcgcctcttcaa 146500
>dbj|AB016532.1| Rattus norvegicus mRNA for rPER2, complete cds Length = 5761 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 agcctgcagggcaccgagcc 284 |||||||||||||||||||| Sbjct: 2348 agcctgcagggcaccgagcc 2329 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,248,898 Number of Sequences: 3902068 Number of extensions: 2248898 Number of successful extensions: 48342 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48133 Number of HSP's gapped (non-prelim): 204 length of query: 360 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 338 effective length of database: 17,147,199,772 effective search space: 5795753522936 effective search space used: 5795753522936 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
