Clone Information

BLAST Search Result

Clone Name	baal18e05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RS1_SYNP6 (P46228) 30S ribosomal protein S1	87	4e-17
2	RR1_SPIOL (P29344) 30S ribosomal protein S1, chloroplast precurs...	86	1e-16
3	RS1_LEULA (P50889) 40S ribosomal protein S1	85	2e-16
4	RS1A_SYNY3 (P73530) 30S ribosomal protein S1 homolog A	84	4e-16
5	RS1B_SYNY3 (P74142) 30S ribosomal protein S1 homolog B	81	2e-15
6	RS1_SYNP7 (O33698) 30S ribosomal protein S1	78	2e-14
7	RR1_PORPU (P51345) Chloroplast 30S ribosomal protein S1	78	2e-14
8	RS1_MYCLE (P46836) 30S ribosomal protein S1	77	5e-14
9	RS1_MYCTU (O06147) 30S ribosomal protein S1	76	8e-14
10	ISPH_CLOAB (Q97I09) 4-hydroxy-3-methylbut-2-enyl diphosphate red...	75	1e-13
11	RS1_BUCBP (Q89AJ3) 30S ribosomal protein S1	74	2e-13
12	RS1H_BACC1 (O06000) 30S ribosomal protein S1 homolog	74	3e-13
13	RS1_BUCAI (P57395) 30S ribosomal protein S1	74	4e-13
14	RS1_PROSP (P14128) 30S ribosomal protein S1 (Fragment)	73	7e-13
15	RS1H_BACSU (P38494) 30S ribosomal protein S1 homolog	72	9e-13
16	RS1_SHIFL (P0AG70) 30S ribosomal protein S1	72	1e-12
17	RS1_ECOLI (P0AG67) 30S ribosomal protein S1	72	1e-12
18	RS1_ECOL6 (P0AG68) 30S ribosomal protein S1	72	1e-12
19	RS1_ECO57 (P0AG69) 30S ribosomal protein S1	72	1e-12
20	RS1_BUCAP (Q44653) 30S ribosomal protein S1	71	2e-12
21	RS1_RHOPA (Q6NDP1) 30S ribosomal protein S1 (RRP-S1)	71	2e-12
22	ISPH_FUSNN (Q8RI52) 4-hydroxy-3-methylbut-2-enyl diphosphate red...	71	3e-12
23	ISPH_CLOTE (Q895G2) 4-hydroxy-3-methylbut-2-enyl diphosphate red...	69	1e-11
24	RS1_RICPR (Q9ZD28) 30S ribosomal protein S1	67	5e-11
25	RS1_HAEIN (Q48082) 30S ribosomal protein S1	67	5e-11
26	GS13_BACSU (P80870) General stress protein 13 (GSP13)	66	7e-11
27	YHGF_NEIMB (Q51152) Hypothetical protein NMB0075	65	1e-10
28	YHGF_NEIMA (P57072) Hypothetical protein NMA0194	65	1e-10
29	RS1_HELPJ (Q9ZKF6) 30S ribosomal protein S1	63	6e-10
30	RS1_STAS1 (Q49XT0) 30S ribosomal protein S1	63	7e-10
31	RS1_STAEQ (Q5HP69) 30S ribosomal protein S1	62	9e-10
32	MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-depend...	62	9e-10
33	RS1_RHIME (P14129) 30S ribosomal protein S1	62	1e-09
34	YABR_BACSU (P37560) Hypothetical protein yabR	62	1e-09
35	RS1_HELPY (P56008) 30S ribosomal protein S1	61	2e-09
36	RS1_CHLPN (Q9Z8M3) 30S ribosomal protein S1	61	2e-09
37	RS1_STAAW (Q8NWM8) 30S ribosomal protein S1	60	4e-09
38	RS1_STAAS (Q6G987) 30S ribosomal protein S1	60	4e-09
39	RS1_STAAR (Q6GGT5) 30S ribosomal protein S1	60	4e-09
40	RS1_STAAC (Q5HFU7) 30S ribosomal protein S1	60	4e-09
41	RS1_CHLTR (O84100) 30S ribosomal protein S1	60	6e-09
42	RS1_CHLMU (P38016) 30S ribosomal protein S1 (70 kDa antigen)	60	6e-09
43	RRP5_YEAST (Q05022) rRNA biogenesis protein RRP5	58	2e-08
44	RS1_STAAN (Q7A5J0) 30S ribosomal protein S1	58	2e-08
45	RS1_STAAM (Q99U14) 30S ribosomal protein S1	58	2e-08
46	YHGF_ECOLI (P46837) Protein yhgF	56	7e-08
47	RS1_STAHJ (Q4L6I1) 30S ribosomal protein S1	55	1e-07
48	Y568_HAEIN (P71353) Hypothetical protein HI0568	54	4e-07
49	TEX_BORPE (Q45388) Protein tex	53	8e-07
50	PNP_PSEPU (O87792) Polyribonucleotide nucleotidyltransferase (EC...	51	2e-06
51	PNP_ECOLI (P05055) Polyribonucleotide nucleotidyltransferase (EC...	50	5e-06
52	IF2A_PYRFU (Q8U1R5) Translation initiation factor 2 alpha subuni...	50	5e-06
53	PNP_BUCAP (Q8K9H5) Polyribonucleotide nucleotidyltransferase (EC...	50	6e-06
54	IF2A_HALMA (Q5UX22) Translation initiation factor 2 alpha subuni...	49	8e-06
55	PNP_HAEIN (P44584) Polyribonucleotide nucleotidyltransferase (EC...	49	1e-05
56	IF2A_ARCFU (O29723) Translation initiation factor 2 alpha subuni...	49	1e-05
57	IF2A_PYRKO (Q5JE49) Translation initiation factor 2 alpha subuni...	49	1e-05
58	IF2A_METTH (O27363) Translation initiation factor 2 alpha subuni...	48	2e-05
59	IF2A_METJA (Q57581) Translation initiation factor 2 alpha subuni...	48	2e-05
60	IF2A_PYRHO (O58655) Translation initiation factor 2 alpha subuni...	47	4e-05
61	IF2A_PYRAB (Q9V0E4) Translation initiation factor 2 alpha subuni...	47	4e-05
62	PNP_RICPR (Q9ZD43) Polyribonucleotide nucleotidyltransferase (EC...	46	7e-05
63	PNP_PHOLU (P41121) Polyribonucleotide nucleotidyltransferase (EC...	45	1e-04
64	IF2A_HALSA (Q9HRT8) Translation initiation factor 2 alpha subuni...	45	2e-04
65	PNP_BUCAI (P57454) Polyribonucleotide nucleotidyltransferase (EC...	44	3e-04
66	PNP_YEREN (O34275) Polyribonucleotide nucleotidyltransferase (EC...	44	3e-04
67	DHX8_HUMAN (Q14562) ATP-dependent RNA helicase DHX8 (EC 3.6.1.-)...	44	5e-04
68	IF2A_METKA (Q8TY86) Translation initiation factor 2 alpha subuni...	43	6e-04
69	PNP_BACSU (P50849) Polyribonucleotide nucleotidyltransferase (EC...	43	8e-04
70	DHX8_SCHPO (O42643) Putative pre-mRNA-splicing factor ATP-depend...	43	8e-04
71	PNP_BUCBP (Q89AF8) Polyribonucleotide nucleotidyltransferase (EC...	42	0.001
72	RNR_BUCAP (Q8K917) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB p...	41	0.002
73	PRP22_YEAST (P24384) Pre-mRNA-splicing factor ATP-dependent RNA ...	40	0.004
74	IF2A_THEVO (Q97BP2) Translation initiation factor 2 alpha subuni...	40	0.004
75	RRP5_HUMAN (Q14690) RRP5 protein homolog (Programmed cell death ...	40	0.007
76	RNR_HAEIN (P44907) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB p...	39	0.011
77	RNR_BUCAI (P57628) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB p...	39	0.011
78	DHX8_ARATH (Q38953) Probable pre-mRNA-splicing factor ATP-depend...	37	0.033
79	IF2A_THEAC (Q9HIX3) Translation initiation factor 2 alpha subuni...	37	0.043
80	RNR_BACSU (O32231) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB p...	36	0.073
81	RNR_VIBPA (P40611) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB p...	36	0.095
82	BMP2K_HUMAN (Q9NSY1) BMP-2-inducible protein kinase (EC 2.7.11.1...	34	0.28
83	GBF_DICDI (P36417) G-box-binding factor (GBF)	33	0.47
84	R1AB_CVH22 (Q05002) Replicase polyprotein 1ab (pp1ab) (ORF1ab po...	33	0.62
85	VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contai...	32	1.4
86	PSAB_CHLRE (P09144) Photosystem I P700 chlorophyll a apoprotein ...	32	1.8
87	RNR_VIBCH (Q9KNY1) Ribonuclease R (EC 3.1.-.-) (RNase R)	32	1.8
88	NO40_MOUSE (Q9ESX4) Nucleolar protein of 40 kDa (pNO40) (Zinc fi...	31	3.1
89	NO40_HUMAN (Q9NP64) Nucleolar protein of 40 kDa (pNO40) (Zinc fi...	31	3.1
90	PSAB_CHLMO (P36492) Photosystem I P700 chlorophyll a apoprotein ...	31	3.1
91	Y1198_METJA (Q58598) Hypothetical protein MJ1198	31	3.1
92	HS21C_PEA (P09886) Small heat shock protein, chloroplast precursor	31	3.1
93	FLHA_SALTY (P40729) Flagellar biosynthesis protein flhA	27	4.0
94	FLHA_ECOLI (P76298) Flagellar biosynthesis protein flhA	27	4.0
95	DNAJ1_NOCFA (Q5YZX0) Chaperone protein dnaJ 1	30	4.0
96	DXS_CAMJE (Q9PIH8) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2...	30	4.0
97	CHS3_YEAST (P29465) Chitin synthase 3 (EC 2.4.1.16) (Chitin-UDP ...	30	5.2
98	RNR_UREPA (Q9PR88) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB p...	30	5.2
99	GSH1_NEUCR (Q8X0X0) Glutamate--cysteine ligase (EC 6.3.2.2) (Gam...	30	5.2
100	SPEN_DROME (Q8SX83) Protein split ends	30	6.8
101	PSAB_MASLA (O52475) Photosystem I P700 chlorophyll a apoprotein ...	30	6.8
102	SRY_MOUSE (Q05738) Sex-determining region Y protein (Testis-dete...	30	6.8
103	FLHA_PROMI (Q51910) Flagellar biosynthesis protein flhA	25	8.4

>RS1_SYNP6 (P46228) 30S ribosomal protein S1|
          Length = 306

 Score = 87.0 bits (214), Expect = 4e-17
 Identities = 48/160 (30%), Positives = 87/160 (54%)
 Frame = +2

Query: 14  SNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKK 193
           +N GG +++   ++GF+P   +S            +   +DLVG  + +K +E +E   +
Sbjct: 128 TNRGGALVRIEGLRGFIPGSHIST-----------RKAKEDLVGEELPLKFLEVDEDRNR 176

Query: 194 LVFSEKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWD 373
           LV S + A      +++++G +  G V  +  YGAF+ +        ++GL+HISE+S D
Sbjct: 177 LVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIG------GVSGLLHISEISHD 230

Query: 374 LVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
            ++         D VKV+++++DAE+ RI LS +QLE +P
Sbjct: 231 HIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 270

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>RR1_SPIOL (P29344) 30S ribosomal protein S1, chloroplast precursor (CS1)|
          Length = 411

 Score = 85.5 bits (210), Expect = 1e-16
 Identities = 50/161 (31%), Positives = 87/161 (54%)
 Frame = +2

Query: 11  GSNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEK 190
           G+N GG++     ++GFVP   +S            +   ++L+   + +K VE +E + 
Sbjct: 193 GANKGGVVALVEGLRGFVPFSQISS-----------KSSAEELLEKEIPLKFVEVDEEQS 241

Query: 191 KLVFSEKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSW 370
           +LV S + A      +Q+ IG +  G V S+  YGAF+ +        + GL+H+S++S 
Sbjct: 242 RLVMSNRKAMADS-QAQLGIGSVVTGTVQSLKPYGAFIDIG------GINGLLHVSQISH 294

Query: 371 DLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           D V D+   L  GDT+KV++++ D E+ R+ LS ++LE  P
Sbjct: 295 DRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 335

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>RS1_LEULA (P50889) 40S ribosomal protein S1|
          Length = 429

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 7/172 (4%)
 Frame = +2

Query: 23  GGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVF 202
           GGLI+  N ++GFVP  +++        +R + D+ +      +  +V+E + A  +L+ 
Sbjct: 157 GGLIVDVNGVRGFVPASMVA--------ERFVSDLNQ-FKNKDIKAQVIEIDPANARLIL 207

Query: 203 SEKD-------ASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISE 361
           S K        A  +   S++ +G + +G V  +  +GAFV L   DG      LVH+SE
Sbjct: 208 SRKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDG------LVHVSE 261

Query: 362 VSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDKI 517
           +S D V++  D LT+GD V V ++ +D EK RI LSI+  +  P  E  D+I
Sbjct: 262 ISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQI 313



 Score = 63.2 bits (152), Expect = 6e-10
 Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 3/132 (2%)
 Frame = +2

Query: 107 KRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVG 277
           K P   +TK   G  V VK++  +  + ++  S K      W   + Q+  G + +G V 
Sbjct: 268 KNPADVLTK---GDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVK 324

Query: 278 SVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSR 457
            V  +GAFV +  P     + GLVH+S++S   +++  + L  GD V+V V+++   + R
Sbjct: 325 RVKDFGAFVEI-LPG----IEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEER 379

Query: 458 IGLSIRQLEEDP 493
           I LS++ LEE P
Sbjct: 380 ISLSMKALEEKP 391

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>RS1A_SYNY3 (P73530) 30S ribosomal protein S1 homolog A|
          Length = 328

 Score = 83.6 bits (205), Expect = 4e-16
 Identities = 46/160 (28%), Positives = 85/160 (53%)
 Frame = +2

Query: 14  SNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKK 193
           +N GG +++   ++GF+P   +S            ++  +DLVG  + +K +E +E   +
Sbjct: 128 TNRGGALVRIEGLRGFIPGSHISA-----------REAKEDLVGEDLPLKFLEVDEERNR 176

Query: 194 LVFSEKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWD 373
           LV S + A      + +++  +  G V  +  YGAF+ +        ++GL+HISE+S D
Sbjct: 177 LVLSHRRALVERKMNGLEVAQVVVGSVRGIKPYGAFIDIG------GVSGLLHISEISHD 230

Query: 374 LVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
            +          D +KV+++++DAE+ RI LS +QLE +P
Sbjct: 231 HIDTPHSVFNVNDEIKVMIIDLDAERGRISLSTKQLEPEP 270

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>RS1B_SYNY3 (P74142) 30S ribosomal protein S1 homolog B|
          Length = 305

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 2/180 (1%)
 Frame = +2

Query: 11  GSNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEK 190
           G+N GG++     ++GF+P   L             +D    LVG  +   ++EAN+   
Sbjct: 125 GTNKGGVVGDVEGLRGFIPRSHLMH-----------KDNMDALVGQVLKAHILEANQDNN 173

Query: 191 KLVFSEKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSW 370
           KLV +++    +    ++  G IY+G V  +  YG FV ++       +TGL+H+S+VS 
Sbjct: 174 KLVLTQRRIQQAESMGKIAAGNIYEGKVAKIQPYGVFVEIE------GVTGLLHVSQVSG 227

Query: 371 DLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP--LLETLDKIIPLEPDLSP 544
             V  +      G  + V V  +D  K+RI LS R LE  P  L+E  D+++   P+  P
Sbjct: 228 TRVDSLNTLFAFGQAISVYVQEIDEYKNRISLSTRILETYPGELVEKFDEMMADAPNRLP 287

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>RS1_SYNP7 (O33698) 30S ribosomal protein S1|
          Length = 295

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 54/183 (29%), Positives = 90/183 (49%)
 Frame = +2

Query: 11  GSNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEK 190
           GSN GG+      ++ F+P   L+            ++    L G +++V  +E N A+K
Sbjct: 124 GSNKGGVTADLEGLRAFIPRSHLNE-----------KEDLDSLKGKTLTVAFLEVNRADK 172

Query: 191 KLVFSEKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSW 370
           KLV SE+ A+ +    ++++G + +G V  +  +G FV L         T L+ I+++S 
Sbjct: 173 KLVLSERQAARTALVREIEVGQLINGKVTGLKPFGVFVDLG------GATALLPINQISQ 226

Query: 371 DLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDKIIPLEPDLSPDA 550
             V DV      GD ++ +VV +D  K RI LS + LE  P  E L+ +  L+   +  A
Sbjct: 227 KFVADVGAIFKIGDPIQALVVAIDNTKGRISLSTKVLENHP-GEILENVAELQASAADRA 285

Query: 551 EAA 559
           E A
Sbjct: 286 ERA 288

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>RR1_PORPU (P51345) Chloroplast 30S ribosomal protein S1|
          Length = 263

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 46/159 (28%), Positives = 83/159 (52%)
 Frame = +2

Query: 8   RGSNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAE 187
           +G N GG+I+    + GFVPN  L+  ++ K+                + +K++   E  
Sbjct: 122 KGFNKGGMIVNLEGISGFVPNSHLN--NFSKNTSS---------TNKFIKLKLLNVEEKS 170

Query: 188 KKLVFSEKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVS 367
             L+ S + A  +  SS + +G I +G++  +  YG F+      GN  L GLVHISE++
Sbjct: 171 NNLILSHRRALIAQASSNLIVGNIIEGVINQITPYGLFIKA----GN--LKGLVHISEIN 224

Query: 368 WDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLE 484
              V+ +      GDT+K ++++VD ++ R+ LS++ L+
Sbjct: 225 VKQVERIPSQFKIGDTIKAVIIHVDKKQGRLSLSMKHLK 263

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>RS1_MYCLE (P46836) 30S ribosomal protein S1|
          Length = 481

 Score = 76.6 bits (187), Expect = 5e-14
 Identities = 50/166 (30%), Positives = 89/166 (53%), Gaps = 9/166 (5%)
 Frame = +2

Query: 23  GGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVF 202
           GGLIL    ++GF+P  L+          R ++D+ +  +G  +  K++E ++    +V 
Sbjct: 136 GGLILDIG-LRGFLPASLVE--------MRRVRDL-QPYIGKEIEAKIIELDKNRNNVVL 185

Query: 203 SEKDASW---------SLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHI 355
           S +  +W         S + +Q++ G I  G+V S+ ++GAFV L   DG      LVH+
Sbjct: 186 SRR--AWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDG------LVHV 237

Query: 356 SEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           SE+SW  +    + +  G+ V V V++VD ++ R+ LS++  +EDP
Sbjct: 238 SELSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKATQEDP 283



 Score = 59.3 bits (142), Expect = 8e-09
 Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEK---DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           VG+ V+V+V++ +   +++  S K   +  W  ++    IG I  G V  +  +GAFV +
Sbjct: 254 VGNEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRV 313

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEED 490
           +  +G   + GLVHISE++   V+     +  GD   V V+++D E+ RI LS++Q  ED
Sbjct: 314 E--EG---IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANED 368

Query: 491 PLLE 502
            + E
Sbjct: 369 YIEE 372

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>RS1_MYCTU (O06147) 30S ribosomal protein S1|
          Length = 481

 Score = 75.9 bits (185), Expect = 8e-14
 Identities = 50/166 (30%), Positives = 88/166 (53%), Gaps = 9/166 (5%)
 Frame = +2

Query: 23  GGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVF 202
           GGLIL    ++GF+P  L+          R ++D+ +  +G  +  K++E ++    +V 
Sbjct: 136 GGLILDIG-LRGFLPASLVE--------MRRVRDL-QPYIGKEIEAKIIELDKNRNNVVL 185

Query: 203 SEKDASW---------SLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHI 355
           S +  +W         S + + ++ G I  G+V S+ ++GAFV L   DG      LVH+
Sbjct: 186 SRR--AWLEQTQSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVDG------LVHV 237

Query: 356 SEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           SE+SW  +    + +  GD V V V++VD ++ R+ LS++  +EDP
Sbjct: 238 SELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283



 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEK---DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           VG  V+V+V++ +   +++  S K   +  W  ++    IG I  G V  +  +GAFV +
Sbjct: 254 VGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRV 313

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEED 490
           +  +G   + GLVHISE++   V+     +  GD   V V+++D E+ RI LS++Q  ED
Sbjct: 314 E--EG---IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANED 368

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>ISPH_CLOAB (Q97I09) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 642

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 9/166 (5%)
 Frame = +2

Query: 23  GGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKK--- 193
           GG+I  Y  ++ F+P   +   H          D  K+ +G S  V ++E +  +++   
Sbjct: 408 GGIIASYKGIRIFIPASHVELFH---------VDNLKEYIGKSFDVAIIEYSTKKRQTKI 458

Query: 194 ------LVFSEKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHI 355
                 L+  EK+       ++++ G + +G V  +  +GAFV ++  DG      L+H+
Sbjct: 459 VASRRALLSKEKEKVEETVWNKLEEGQVVEGEVKRLTDFGAFVEIEGVDG------LLHV 512

Query: 356 SEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           SE+SW  V+   D L  GD +KV V++VD E  ++ LS+++L E+P
Sbjct: 513 SEISWGRVEKPADVLKIGDKIKVYVLSVDKENKKLSLSVKKLTENP 558



 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
 Frame = +2

Query: 122 DVTKDLVGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHY 292
           DV K  +G  + V V+  ++  KKL  S K  +   W+    +  +G +  G V     +
Sbjct: 525 DVLK--IGDKIKVYVLSVDKENKKLSLSVKKLTENPWNNVEEKYPVGSVVLGKVIRFADF 582

Query: 293 GAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSI 472
           GAFV L+       + GLVHISE+S   +    D L  G+ +K  ++ V +E+ +IGLSI
Sbjct: 583 GAFVKLE-----PGVDGLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSI 637

Query: 473 RQLEE 487
           R++EE
Sbjct: 638 REVEE 642

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>RS1_BUCBP (Q89AJ3) 30S ribosomal protein S1|
          Length = 566

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 7/168 (4%)
 Frame = +2

Query: 11  GSNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEK 190
           G   GG  ++   ++ F+P  L+          RP+++ T  L G  +  KV++ ++   
Sbjct: 114 GKVKGGFTVELEDIRAFLPGSLVDI--------RPVRE-TMHLEGKELEFKVIKLDQKRN 164

Query: 191 KLVFSEKDASWSLYSSQVKI-------GGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLV 349
            +V S +    S Y+++  +       G I  GIV ++  YGAFV L   DG      L+
Sbjct: 165 NVVVSRRAVIESEYNAERNLLLETLQEGLIVSGIVKNLTDYGAFVDLGGVDG------LL 218

Query: 350 HISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           HI++++W  V+   + +  GD VK+ ++  D EK R+ L ++QL +DP
Sbjct: 219 HITDMAWKRVKHPSEIVNIGDEVKIKILKFDREKIRVSLGLKQLSDDP 266



 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 5/123 (4%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           V S V V +++ +E  +++    K      W  +S +   G    G + S+  +G F+ L
Sbjct: 324 VNSVVKVMILDIDEERRRISLGLKQCKNNPWMEFSKKYNKGSHVVGKIKSITDFGIFIGL 383

Query: 311 QFPDGNYHLTGLVHISEVSWDL--VQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLE 484
           +       + GLVH+S++SW++   + V+ +  +G+ V  +V+ VD ++ RI L I+QL+
Sbjct: 384 EGS-----IDGLVHLSDISWNISGEESVKKY-KKGEEVLAVVLQVDPDRERISLGIKQLQ 437

Query: 485 EDP 493
           EDP
Sbjct: 438 EDP 440



 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           +G  V +K+++ +  + ++    K  S   W+  S +        G V ++  YG FV +
Sbjct: 237 IGDEVKIKILKFDREKIRVSLGLKQLSDDPWTKISERYPEKTKITGRVTNLTDYGCFVEI 296

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 487
           +  +G   + GLVH+SE+ W          +     VKV+++++D E+ RI L ++Q + 
Sbjct: 297 E--EG---VEGLVHVSEMDWTNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQCKN 351

Query: 488 DPLLE 502
           +P +E
Sbjct: 352 NPWME 356

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>RS1H_BACC1 (O06000) 30S ribosomal protein S1 homolog|
          Length = 382

 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 52/164 (31%), Positives = 89/164 (54%), Gaps = 7/164 (4%)
 Frame = +2

Query: 23  GGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVF 202
           GGL++    ++GF+P  L+   H+       ++D T D  G +++VK+VE +  + +++ 
Sbjct: 116 GGLVVDLG-VRGFIPASLVE-VHY-------VEDFT-DYKGKTLAVKIVELDREKNRVIL 165

Query: 203 SEK-------DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISE 361
           S K       D+      S +K G + +G V  +  +GAFV++   DG      LVHIS+
Sbjct: 166 SHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDG------LVHISQ 219

Query: 362 VSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           +S + V+   + L +G  VKV V++VDA+  RI LSI+  +  P
Sbjct: 220 ISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGP 263



 Score = 59.3 bits (142), Expect = 8e-09
 Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 4/131 (3%)
 Frame = +2

Query: 143 GSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQ 313
           G  V VKV+  +   +++  S K A    W   + +VK G I +GIV  +  +GAFV + 
Sbjct: 235 GQKVKVKVLSVDADTQRISLSIKAAQPGPWENIAGEVKAGDIREGIVKRLVTFGAFVEI- 293

Query: 314 FPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQ-LEED 490
            P     + GLVH+S+++   V++  + L  G  VKV V+ V   + RI LSI++  EE+
Sbjct: 294 LPG----VEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEAFEEN 349

Query: 491 PLLETLDKIIP 523
            + E   +  P
Sbjct: 350 NVTEDYSQYEP 360

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>RS1_BUCAI (P57395) 30S ribosomal protein S1|
          Length = 558

 Score = 73.6 bits (179), Expect = 4e-13
 Identities = 52/184 (28%), Positives = 92/184 (50%), Gaps = 7/184 (3%)
 Frame = +2

Query: 11  GSNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEK 190
           G   GG  ++ N ++ F+P  L+          RP++D T  L G  +  KV++ ++   
Sbjct: 114 GKVKGGFTVELNDIRAFLPGSLVDV--------RPVRD-TIHLEGKELEFKVIKLDQKRN 164

Query: 191 KLVFSEKDASWSLYSSQ-------VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLV 349
            +V S +    S  S++       ++ G    GIV ++  YGAFV L   DG      L+
Sbjct: 165 NVVVSRRAVIESENSAERDQLLENLQEGMHVKGIVKNLTDYGAFVDLGGVDG------LL 218

Query: 350 HISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDKIIPLE 529
           HI++++W  V+   + +  GD + + ++  D E++R+ L ++QL EDP +  + K  P E
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEINIKILKFDRERTRVSLGLKQLGEDPWI-AISKRYPEE 277

Query: 530 PDLS 541
             LS
Sbjct: 278 TKLS 281



 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 4/143 (2%)
 Frame = +2

Query: 77  LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVK 247
           +S   W      P + VT   V   V V V++ +E  +++    K      W  +S   K
Sbjct: 306 VSEMDWTNKNIHPSKVVT---VNDVVEVMVLDIDEERRRISLGLKQCKINPWKEFSETHK 362

Query: 248 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLV-QDVQDFLTEGDTVKV 424
            G    G + S+  +G F+ L     N  + GLVH+S++SW +  ++      + D +  
Sbjct: 363 KGVHVLGKIKSITDFGIFIGL-----NGGIDGLVHLSDISWTIPGEEAVVKYKKNDEISA 417

Query: 425 IVVNVDAEKSRIGLSIRQLEEDP 493
           +V+ VDAE+ RI L I+QLEEDP
Sbjct: 418 VVLQVDAERERISLGIKQLEEDP 440



 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           VG  +++K+++ +    ++    K      W   S +        G V ++  YG FV +
Sbjct: 237 VGDEINIKILKFDRERTRVSLGLKQLGEDPWIAISKRYPEETKLSGRVTNLTDYGCFVEI 296

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 487
           +  +G   + GLVH+SE+ W          +T  D V+V+V+++D E+ RI L ++Q + 
Sbjct: 297 E--EG---VEGLVHVSEMDWTNKNIHPSKVVTVNDVVEVMVLDIDEERRRISLGLKQCKI 351

Query: 488 DPLLE 502
           +P  E
Sbjct: 352 NPWKE 356

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>RS1_PROSP (P14128) 30S ribosomal protein S1 (Fragment)|
          Length = 378

 Score = 72.8 bits (177), Expect = 7e-13
 Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 7/168 (4%)
 Frame = +2

Query: 11  GSNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEK 190
           G   GG  ++ N ++ F+P  L+          RP++D T  L G  +  KV++ ++   
Sbjct: 9   GKVKGGFTVELNGIRAFLPGSLVDV--------RPVRDTTH-LEGKELEFKVIKLDQKRN 59

Query: 191 KLVFSEKDASWSLYSSQ-------VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLV 349
            +V S +    S  S++       ++ G    GIV ++  YGAFV L   DG      L+
Sbjct: 60  NVVVSRRAVIESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDG------LL 113

Query: 350 HISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           HI++++W  V+   + +  GD + V V+  D E++R+ L ++QL EDP
Sbjct: 114 HITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 161



 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 37/123 (30%), Positives = 68/123 (55%), Gaps = 5/123 (4%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           VG  V V V++ +E  +++    K      W  ++     G   +G + S+  +G F+ L
Sbjct: 219 VGDVVEVMVLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL 278

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQD--VQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLE 484
           +       + GLVH+S++SW++  +  V+++  +GD +  +V+ VDAE+ RI L ++QL 
Sbjct: 279 EGG-----IDGLVHLSDISWNVAGEEAVREY-KKGDEIAAVVLQVDAERERISLGVKQLA 332

Query: 485 EDP 493
           EDP
Sbjct: 333 EDP 335



 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           VG  ++VKV++ +    ++    K      W   + +   G    G V ++  YG FV +
Sbjct: 132 VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 191

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 487
           +  +G   + GLVH+SE+ W          +  GD V+V+V+++D E+ RI L ++Q + 
Sbjct: 192 E--EG---VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 246

Query: 488 DP 493
           +P
Sbjct: 247 NP 248

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>RS1H_BACSU (P38494) 30S ribosomal protein S1 homolog|
          Length = 382

 Score = 72.4 bits (176), Expect = 9e-13
 Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
 Frame = +2

Query: 26  GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 205
           G  +    + G V    LS +H  K       DV ++  G  V VKV+  +   +++  S
Sbjct: 202 GAFVDIGGIDGLVHISQLSHSHVEKP-----SDVVEE--GQEVKVKVLSVDRDNERISLS 254

Query: 206 EKDA---SWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDL 376
            KD     W+    +VK G + +G V  +  +GAFV +  P     + GLVHIS++S   
Sbjct: 255 IKDTLPGPWNQIGEKVKPGDVLEGTVQRLVSFGAFVEI-LPG----VEGLVHISQISNKH 309

Query: 377 VQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLD 511
           +    + L EG TVKV V++V+  + RI LS+R+LEE P  +  D
Sbjct: 310 IGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELEETPKADQED 354



 Score = 68.9 bits (167), Expect = 1e-11
 Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 7/174 (4%)
 Frame = +2

Query: 23  GGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVF 202
           GGL++    ++GF+P  L+  AH+       ++D T D  G ++S+ VVE +  + +++ 
Sbjct: 115 GGLVVDIG-VRGFIPASLVE-AHF-------VEDFT-DYKGKTLSLLVVELDRDKNRVIL 164

Query: 203 SEKDASWSLYSSQ-------VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISE 361
           S +    S  +++       +++G + DG V  +  +GAFV +   DG      LVHIS+
Sbjct: 165 SHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGIDG------LVHISQ 218

Query: 362 VSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDKIIP 523
           +S   V+   D + EG  VKV V++VD +  RI LSI+     P  +  +K+ P
Sbjct: 219 LSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIKDTLPGPWNQIGEKVKP 272

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>RS1_SHIFL (P0AG70) 30S ribosomal protein S1|
          Length = 557

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 7/168 (4%)
 Frame = +2

Query: 11  GSNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEK 190
           G   GG  ++ N ++ F+P  L+          RP++D T  L G  +  KV++ ++   
Sbjct: 114 GKVKGGFTVELNGIRAFLPGSLVDV--------RPVRD-TLHLEGKELEFKVIKLDQKRN 164

Query: 191 KLVFSEKDASWSLYSSQ-------VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLV 349
            +V S +    S  S++       ++ G    GIV ++  YGAFV L   DG      L+
Sbjct: 165 NVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDG------LL 218

Query: 350 HISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           HI++++W  V+   + +  GD + V V+  D E++R+ L ++QL EDP
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266



 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           VG  V V V++ +E  +++    K      W  ++     G   +G + S+  +G F+ L
Sbjct: 324 VGDVVEVMVLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL 383

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQD--VQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLE 484
              DG   + GLVH+S++SW++  +  V+++  +GD +  +V+ VDAE+ RI L ++QL 
Sbjct: 384 ---DGG--IDGLVHLSDISWNVAGEEAVREY-KKGDEIAAVVLQVDAERERISLGVKQLA 437

Query: 485 EDP 493
           EDP
Sbjct: 438 EDP 440



 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           VG  ++VKV++ +    ++    K      W   + +   G    G V ++  YG FV +
Sbjct: 237 VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 487
           +  +G   + GLVH+SE+ W          +  GD V+V+V+++D E+ RI L ++Q + 
Sbjct: 297 E--EG---VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351

Query: 488 DP 493
           +P
Sbjct: 352 NP 353



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
 Frame = +2

Query: 77  LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYSSQV---K 247
           LS   W    +  +++  K   G  ++  V++ +   +++    K  +   +++ V   K
Sbjct: 393 LSDISWNVAGEEAVREYKK---GDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNK 449

Query: 248 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVI 427
            G I  G V +V   GA V L   DG   + G +  SE S D V+D    L+ GD V+  
Sbjct: 450 KGAIVTGKVTAVDAKGATVELA--DG---VEGYLRASEASRDRVEDATLVLSVGDEVEAK 504

Query: 428 VVNVDAEKSRIGLSIRQLEE 487
              VD +   I LS+R  +E
Sbjct: 505 FTGVDRKNRAISLSVRAKDE 524

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>RS1_ECOLI (P0AG67) 30S ribosomal protein S1|
          Length = 557

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 7/168 (4%)
 Frame = +2

Query: 11  GSNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEK 190
           G   GG  ++ N ++ F+P  L+          RP++D T  L G  +  KV++ ++   
Sbjct: 114 GKVKGGFTVELNGIRAFLPGSLVDV--------RPVRD-TLHLEGKELEFKVIKLDQKRN 164

Query: 191 KLVFSEKDASWSLYSSQ-------VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLV 349
            +V S +    S  S++       ++ G    GIV ++  YGAFV L   DG      L+
Sbjct: 165 NVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDG------LL 218

Query: 350 HISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           HI++++W  V+   + +  GD + V V+  D E++R+ L ++QL EDP
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266



 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           VG  V V V++ +E  +++    K      W  ++     G   +G + S+  +G F+ L
Sbjct: 324 VGDVVEVMVLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL 383

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQD--VQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLE 484
              DG   + GLVH+S++SW++  +  V+++  +GD +  +V+ VDAE+ RI L ++QL 
Sbjct: 384 ---DGG--IDGLVHLSDISWNVAGEEAVREY-KKGDEIAAVVLQVDAERERISLGVKQLA 437

Query: 485 EDP 493
           EDP
Sbjct: 438 EDP 440



 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           VG  ++VKV++ +    ++    K      W   + +   G    G V ++  YG FV +
Sbjct: 237 VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 487
           +  +G   + GLVH+SE+ W          +  GD V+V+V+++D E+ RI L ++Q + 
Sbjct: 297 E--EG---VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351

Query: 488 DP 493
           +P
Sbjct: 352 NP 353



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
 Frame = +2

Query: 77  LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYSSQV---K 247
           LS   W    +  +++  K   G  ++  V++ +   +++    K  +   +++ V   K
Sbjct: 393 LSDISWNVAGEEAVREYKK---GDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNK 449

Query: 248 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVI 427
            G I  G V +V   GA V L   DG   + G +  SE S D V+D    L+ GD V+  
Sbjct: 450 KGAIVTGKVTAVDAKGATVELA--DG---VEGYLRASEASRDRVEDATLVLSVGDEVEAK 504

Query: 428 VVNVDAEKSRIGLSIRQLEE 487
              VD +   I LS+R  +E
Sbjct: 505 FTGVDRKNRAISLSVRAKDE 524

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>RS1_ECOL6 (P0AG68) 30S ribosomal protein S1|
          Length = 557

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 7/168 (4%)
 Frame = +2

Query: 11  GSNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEK 190
           G   GG  ++ N ++ F+P  L+          RP++D T  L G  +  KV++ ++   
Sbjct: 114 GKVKGGFTVELNGIRAFLPGSLVDV--------RPVRD-TLHLEGKELEFKVIKLDQKRN 164

Query: 191 KLVFSEKDASWSLYSSQ-------VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLV 349
            +V S +    S  S++       ++ G    GIV ++  YGAFV L   DG      L+
Sbjct: 165 NVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDG------LL 218

Query: 350 HISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           HI++++W  V+   + +  GD + V V+  D E++R+ L ++QL EDP
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266



 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           VG  V V V++ +E  +++    K      W  ++     G   +G + S+  +G F+ L
Sbjct: 324 VGDVVEVMVLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL 383

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQD--VQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLE 484
              DG   + GLVH+S++SW++  +  V+++  +GD +  +V+ VDAE+ RI L ++QL 
Sbjct: 384 ---DGG--IDGLVHLSDISWNVAGEEAVREY-KKGDEIAAVVLQVDAERERISLGVKQLA 437

Query: 485 EDP 493
           EDP
Sbjct: 438 EDP 440



 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           VG  ++VKV++ +    ++    K      W   + +   G    G V ++  YG FV +
Sbjct: 237 VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 487
           +  +G   + GLVH+SE+ W          +  GD V+V+V+++D E+ RI L ++Q + 
Sbjct: 297 E--EG---VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351

Query: 488 DP 493
           +P
Sbjct: 352 NP 353



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
 Frame = +2

Query: 77  LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYSSQV---K 247
           LS   W    +  +++  K   G  ++  V++ +   +++    K  +   +++ V   K
Sbjct: 393 LSDISWNVAGEEAVREYKK---GDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNK 449

Query: 248 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVI 427
            G I  G V +V   GA V L   DG   + G +  SE S D V+D    L+ GD V+  
Sbjct: 450 KGAIVTGKVTAVDAKGATVELA--DG---VEGYLRASEASRDRVEDATLVLSVGDEVEAK 504

Query: 428 VVNVDAEKSRIGLSIRQLEE 487
              VD +   I LS+R  +E
Sbjct: 505 FTGVDRKNRAISLSVRAKDE 524

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>RS1_ECO57 (P0AG69) 30S ribosomal protein S1|
          Length = 557

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 7/168 (4%)
 Frame = +2

Query: 11  GSNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEK 190
           G   GG  ++ N ++ F+P  L+          RP++D T  L G  +  KV++ ++   
Sbjct: 114 GKVKGGFTVELNGIRAFLPGSLVDV--------RPVRD-TLHLEGKELEFKVIKLDQKRN 164

Query: 191 KLVFSEKDASWSLYSSQ-------VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLV 349
            +V S +    S  S++       ++ G    GIV ++  YGAFV L   DG      L+
Sbjct: 165 NVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDG------LL 218

Query: 350 HISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           HI++++W  V+   + +  GD + V V+  D E++R+ L ++QL EDP
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266



 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           VG  V V V++ +E  +++    K      W  ++     G   +G + S+  +G F+ L
Sbjct: 324 VGDVVEVMVLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL 383

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQD--VQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLE 484
              DG   + GLVH+S++SW++  +  V+++  +GD +  +V+ VDAE+ RI L ++QL 
Sbjct: 384 ---DGG--IDGLVHLSDISWNVAGEEAVREY-KKGDEIAAVVLQVDAERERISLGVKQLA 437

Query: 485 EDP 493
           EDP
Sbjct: 438 EDP 440



 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           VG  ++VKV++ +    ++    K      W   + +   G    G V ++  YG FV +
Sbjct: 237 VGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 487
           +  +G   + GLVH+SE+ W          +  GD V+V+V+++D E+ RI L ++Q + 
Sbjct: 297 E--EG---VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351

Query: 488 DP 493
           +P
Sbjct: 352 NP 353



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
 Frame = +2

Query: 77  LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYSSQV---K 247
           LS   W    +  +++  K   G  ++  V++ +   +++    K  +   +++ V   K
Sbjct: 393 LSDISWNVAGEEAVREYKK---GDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNK 449

Query: 248 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVI 427
            G I  G V +V   GA V L   DG   + G +  SE S D V+D    L+ GD V+  
Sbjct: 450 KGAIVTGKVTAVDAKGATVELA--DG---VEGYLRASEASRDRVEDATLVLSVGDEVEAK 504

Query: 428 VVNVDAEKSRIGLSIRQLEE 487
              VD +   I LS+R  +E
Sbjct: 505 FTGVDRKNRAISLSVRAKDE 524

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>RS1_BUCAP (Q44653) 30S ribosomal protein S1|
          Length = 559

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 7/168 (4%)
 Frame = +2

Query: 11  GSNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEK 190
           G   GG  ++ N ++ F+P  L+          RP++D T  L G  +  KV++ ++   
Sbjct: 114 GKVKGGFTVELNEIRAFLPGSLVDV--------RPVRD-TIHLEGKELEFKVIKLDQKRN 164

Query: 191 KLVFSEKDASWSLYSSQ-------VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLV 349
            +V S +    S  S++       ++ G    GIV ++  YGAFV L   DG      L+
Sbjct: 165 NVVVSRRAVIESENSAERDQLLESLQEGIEIKGIVKNLTDYGAFVDLGGVDG------LL 218

Query: 350 HISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           HI++++W  V+   + +  GD + V ++  D E++R+ L ++QL EDP
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEINVKILKFDKERTRVSLGLKQLGEDP 266



 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           V + V V V++ +E  +++    K      W  +S   K G    G + S+  +G F+ L
Sbjct: 324 VNNIVDVIVLDIDEERRRISLGLKQCKINPWQEFSETHKKGIHVSGKIKSITDFGIFIGL 383

Query: 311 QFPDGNYHLTGLVHISEVSWDLV-QDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 487
           +       + GLVH+S++SW +  ++      +GD +  +V+ VDAE+ RI L I+QLEE
Sbjct: 384 KGG-----IDGLVHLSDISWKISGEEAVKNYKKGDEISAVVLQVDAERERISLGIKQLEE 438

Query: 488 DP 493
           DP
Sbjct: 439 DP 440



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           VG  ++VK+++ ++   ++    K      W   S++   G    G V ++  YG FV +
Sbjct: 237 VGDEINVKILKFDKERTRVSLGLKQLGEDPWIAISNRYPEGIKLSGRVTNLTDYGCFVEI 296

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 487
           +  +G   + GLVH+SE+ W          +   + V VIV+++D E+ RI L ++Q + 
Sbjct: 297 E--EG---VEGLVHVSEMDWTNKNIHPSKVVAVNNIVDVIVLDIDEERRRISLGLKQCKI 351

Query: 488 DPLLE 502
           +P  E
Sbjct: 352 NPWQE 356

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>RS1_RHOPA (Q6NDP1) 30S ribosomal protein S1 (RRP-S1)|
          Length = 565

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 4/149 (2%)
 Frame = +2

Query: 77  LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVK 247
           +S   W K    P + V+       V V+V+E +  ++++    K      W ++  +  
Sbjct: 315 VSEMSWTKKNMHPGKIVS---TSQEVEVQVLEVDSVKRRISLGLKQTMRNPWEVFVEKHP 371

Query: 248 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLV-QDVQDFLTEGDTVKV 424
           +G   +G V +   +G F+ L   DG+  + G+VH+S++ W L  + V D   +GD VK 
Sbjct: 372 VGSTVEGEVKNKTEFGLFLGL---DGD--VDGMVHLSDLDWKLPGEQVIDNFKKGDMVKA 426

Query: 425 IVVNVDAEKSRIGLSIRQLEEDPLLETLD 511
           +V++VD EK RI L ++QLE DP  E  D
Sbjct: 427 VVLDVDVEKERISLGVKQLEGDPFAEPGD 455



 Score = 65.9 bits (159), Expect = 9e-11
 Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
 Frame = +2

Query: 110 RPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYSSQ-------VKIGGIYDG 268
           RPI+DV   L+ +S   ++++ +     +V S +       + Q       ++ G + DG
Sbjct: 148 RPIRDVAP-LMNNSQPFQILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDG 206

Query: 269 IVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAE 448
           +V ++  YGAFV L   DG      L+H+++++W  V    + LT G TVKV ++ ++ E
Sbjct: 207 VVKNITDYGAFVDLGGIDG------LLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHE 260

Query: 449 KSRIGLSIRQLEEDP 493
             RI L ++QL +DP
Sbjct: 261 THRISLGMKQLLDDP 275



 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEK---DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           +G +V VK+++ N    ++    K   D  W    ++  +   + G V ++  YGAFV L
Sbjct: 246 IGQTVKVKIIKINHETHRISLGMKQLLDDPWQGIEAKYPLNARFTGRVTNITDYGAFVEL 305

Query: 311 QFPDGNYHLTGLVHISEVSWDLV-QDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 487
           +       + GL+H+SE+SW          ++    V+V V+ VD+ K RI L ++Q   
Sbjct: 306 E-----PGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMR 360

Query: 488 DP 493
           +P
Sbjct: 361 NP 362

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>ISPH_FUSNN (Q8RI52) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 827

 Score = 70.9 bits (172), Expect = 3e-12
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 5/162 (3%)
 Frame = +2

Query: 23  GGLILKYNSMQGFVPNPL--LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKL 196
           GG +++     GF+PN L  +S +    + K+ IQ + KD       +K+   ++  +K+
Sbjct: 404 GGYLVEAFLYPGFLPNSLSEISDSEEKVNGKK-IQVIVKD-------IKMDPKDKKNRKI 455

Query: 197 VFSEKDASWSLYSSQ---VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVS 367
            +S KD   +    +   + +G I D +V  V  +G  V +        L G +HISEVS
Sbjct: 456 TYSVKDIRLAEQEKEFAGLAVGQIVDCVVTEVLDFGLAVDINT------LKGFIHISEVS 509

Query: 368 WDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           W  +  + D    GD +K +VV++D  K  + LSI++LEEDP
Sbjct: 510 WKRLDKLSDNYKVGDKIKAVVVSLDEAKRNVKLSIKKLEEDP 551



 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 51/167 (30%), Positives = 89/167 (53%), Gaps = 4/167 (2%)
 Frame = +2

Query: 26  GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 205
           GL +  N+++GF+    +S   W +  K  + D  K  VG  +   VV  +EA++ +  S
Sbjct: 491 GLAVDINTLKGFIH---ISEVSWKRLDK--LSDNYK--VGDKIKAVVVSLDEAKRNVKLS 543

Query: 206 EK---DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDL 376
            K   +  W+  +++ K+    +GIV  V  YGAFV ++       + GLVHIS+ SW  
Sbjct: 544 IKKLEEDPWATVANEFKVDDEIEGIVTKVLPYGAFVEIK-----PGVEGLVHISDFSWTK 598

Query: 377 VQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDK 514
            + +V D++ E + +KV + ++  E  ++ L I+QL  +P  ET +K
Sbjct: 599 KKVNVADYVKEREKIKVRITDLHPEDRKLKLGIKQLVANP-WETAEK 644



 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
 Frame = +2

Query: 119  QDVTKDLVGSSVSVKVVEANEAEKKLVFSEK---DASWSLYSSQVKIGGIYDGIVGSVFH 289
            +++ K  +G+ V +K+ E +   KK+  S K    + W     + K+G   +  + +V  
Sbjct: 686  EEIPKFEIGNEVELKITELDLNNKKIKGSLKALRKSPWEHAMEEYKVGTTVEKKIKTVAD 745

Query: 290  YGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLS 469
            +G F+ L        + G +     S + +++++D  +EGD VK  VV V+ E  +I LS
Sbjct: 746  FGLFIELI-----KGIDGFIPTQFASKEFIKNIRDKFSEGDVVKAQVVEVNKETQKIKLS 800

Query: 470  IRQLE 484
            I+++E
Sbjct: 801  IKKIE 805

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>ISPH_CLOTE (Q895G2) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 635

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           VG  + V + + ++ +KKL  S KD +   W     +  +G I  G V     +GAFV L
Sbjct: 521 VGDKIKVYIKDIDKDKKKLALSIKDLTKDPWKDVEVKYPVGNIVLGTVVRFASFGAFVEL 580

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 487
           +       + GL+HIS++S   V  V+D L+ G+ VK  +V VD EK +IGLSI+++ +
Sbjct: 581 E-----PGVDGLIHISQISHKRVDRVEDELSIGEQVKAKIVEVDGEKRKIGLSIKEVND 634



 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 10/167 (5%)
 Frame = +2

Query: 23  GGLILKY-NSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEK--K 193
           GGLI  Y N ++ F+P   +   H          D      G  ++V ++E  E     +
Sbjct: 399 GGLISIYKNIVRVFIPASHVELRH---------VDDLSIYKGCELTVNIIEFEEGRNNTR 449

Query: 194 LVFSEKDASWSLYS-------SQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVH 352
           +V S +D      S       S ++   I +G V  +  +GAFV++   DG      L+H
Sbjct: 450 IVASRRDLLKEEQSKVEEETWSSLEKDTIKEGEVRRLTDFGAFVNINGVDG------LLH 503

Query: 353 ISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           +SE+SW  V+   D L  GD +KV + ++D +K ++ LSI+ L +DP
Sbjct: 504 VSEISWGRVEKPSDMLKVGDKIKVYIKDIDKDKKKLALSIKDLTKDP 550



 Score = 33.5 bits (75), Expect = 0.47
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
 Frame = +2

Query: 239 QVKIGGIYDG-IVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDT 415
           Q+ IG   +G IV  V    A+V++      Y    ++ +SEV+ D  +D+ +F+ +GD 
Sbjct: 294 QISIGQEVEGEIVSIVSSNEAYVNI-----GYKSDAILLLSEVTKDNDEDINNFVKKGDI 348

Query: 416 VKVIVVNVDAEKSRIGLSIRQLEED 490
           +K  ++ + +E     +S+ +L  +
Sbjct: 349 IKGKIIKLGSENKPPVISVIELNRE 373

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>RS1_RICPR (Q9ZD28) 30S ribosomal protein S1|
          Length = 568

 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
 Frame = +2

Query: 152 VSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPD 322
           V V V++ +E  K++    K      W     +  +G    G V +   YG F+ L+  D
Sbjct: 254 VKVMVIKFDEKTKRISLGIKQLDSNPWDAIKEEFPVGKKMTGKVTNFADYGVFLELK--D 311

Query: 323 GNYHLTGLVHISEVSW-DLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLL 499
           G   L GLVH SE+SW    Q+ +  LT G  V+ IV+ VD EK R+ LSI+Q +E+PL+
Sbjct: 312 G---LEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSIKQCQENPLI 368

Query: 500 E 502
           +
Sbjct: 369 K 369



 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 41/161 (25%), Positives = 77/161 (47%)
 Frame = +2

Query: 11  GSNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEK 190
           G   GG  +  + +  F+P   +      KDP   I ++ +     S+  K+     + +
Sbjct: 127 GRVKGGFTVDLSGVVAFLPGSQVD-VRPIKDPTS-IMNIKQPFKILSMDKKLGNIVVSRR 184

Query: 191 KLVFSEKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSW 370
            ++   +  +     S++K G + +G+V ++  YGAF+ L   DG      L+H++++SW
Sbjct: 185 VILEESRSEARDEMLSKIKEGIVLEGVVKNITDYGAFIDLGSVDG------LLHLTDISW 238

Query: 371 DLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
             V    + L     VKV+V+  D +  RI L I+QL+ +P
Sbjct: 239 GRVNHPSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNP 279

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>RS1_HAEIN (Q48082) 30S ribosomal protein S1|
          Length = 549

 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 7/168 (4%)
 Frame = +2

Query: 11  GSNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEK 190
           G   GG  ++ N ++ F+P  L+          RP ++    L+G  +  KV++ ++   
Sbjct: 114 GKVKGGFTVELNGVRAFLPGSLVDT--------RPAREADH-LLGKELEFKVIKLDQKRN 164

Query: 191 KLVFSEKDASWSLYSSQ-------VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLV 349
            +V S +    S  S +       +  G    G+V ++  YGAFV L   DG      L+
Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDG------LL 218

Query: 350 HISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           HI++++W  V+   + +  GD V V V+  D +++R+ L ++QL +DP
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266



 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           +G +V V V+E +E  +++    K      W+ ++     G    G + S+  +G F+ L
Sbjct: 324 LGDTVEVMVLEIDEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIKSITDFGIFIGL 383

Query: 311 QFPDGNYHLTGLVHISEVSWDLV-QDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 487
           +       + GLVH+S++SW +  ++      +GD V  +V+ VDA K RI L I+QLEE
Sbjct: 384 EGG-----IDGLVHLSDISWSISGEEAVRQYKKGDEVSAVVLAVDAVKERISLGIKQLEE 438

Query: 488 DP 493
           DP
Sbjct: 439 DP 440



 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           VG  V+VKV++ ++   ++    K      W+  +    +     G V ++  YG FV +
Sbjct: 237 VGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFVEI 296

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 487
              DG   + GLVH+SE+ W          ++ GDTV+V+V+ +D E+ RI L ++Q + 
Sbjct: 297 L--DG---VEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKA 351

Query: 488 DPLLETLD 511
           +P  +  D
Sbjct: 352 NPWTQFAD 359

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>GS13_BACSU (P80870) General stress protein 13 (GSP13)|
          Length = 129

 Score = 66.2 bits (160), Expect = 7e-11
 Identities = 42/112 (37%), Positives = 64/112 (57%)
 Frame = +2

Query: 233 SSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGD 412
           +++ ++G +Y G V  +  YGAFV L     +    GLVHISEV+   V+D+ + L+ GD
Sbjct: 1   AAKFEVGSVYTGKVTGLQAYGAFVAL-----DEETQGLVHISEVTHGFVKDINEHLSVGD 55

Query: 413 TVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDKIIPLEPDLSPDAEAASSP 568
            V+V V+ VD EK +I LSIR  +  P      +  P +P  +  +E AS+P
Sbjct: 56  EVQVKVLAVDEEKGKISLSIRATQAAP---EKKESKPRKPKAAQVSEEASTP 104

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>YHGF_NEIMB (Q51152) Hypothetical protein NMB0075|
          Length = 757

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 37/86 (43%), Positives = 56/86 (65%)
 Frame = +2

Query: 236 SQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDT 415
           S +++G I +G+V +V ++GAFV     D   H  GLVHIS +S   VQD ++ +  GD 
Sbjct: 635 SDLQVGMILEGVVSNVANFGAFV-----DIGVHQDGLVHISALSNKFVQDPREVVKAGDV 689

Query: 416 VKVIVVNVDAEKSRIGLSIRQLEEDP 493
           VKV V+ VDA + RI L++R L+++P
Sbjct: 690 VKVKVLEVDAARKRIALTMR-LDDEP 714

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>YHGF_NEIMA (P57072) Hypothetical protein NMA0194|
          Length = 757

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 37/86 (43%), Positives = 56/86 (65%)
 Frame = +2

Query: 236 SQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDT 415
           S +++G I +G+V +V ++GAFV     D   H  GLVHIS +S   VQD ++ +  GD 
Sbjct: 635 SDLQVGMILEGVVSNVANFGAFV-----DIGVHQDGLVHISALSNKFVQDPREVVKAGDV 689

Query: 416 VKVIVVNVDAEKSRIGLSIRQLEEDP 493
           VKV V+ VDA + RI L++R L+++P
Sbjct: 690 VKVKVLEVDAARKRIALTMR-LDDEP 714

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>RS1_HELPJ (Q9ZKF6) 30S ribosomal protein S1|
          Length = 552

 Score = 63.2 bits (152), Expect = 6e-10
 Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 4/160 (2%)
 Frame = +2

Query: 26  GLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFS 205
           G+ +K+  + G V    +S        K P+        G  V VK +  +E +++L  S
Sbjct: 214 GIFVKFKGIDGLVHYSEISH-------KGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSLS 266

Query: 206 EK---DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDL 376
            K   +  W     ++K G     +V ++ HYG FV +    GN  + G +H+SE+SWD 
Sbjct: 267 IKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYGVFVDI----GN-DIEGFLHVSEISWDK 321

Query: 377 -VQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
            V     +L+ G  + V ++++D +  R+ +S++QL   P
Sbjct: 322 NVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRP 361



 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 41/160 (25%), Positives = 80/160 (50%), Gaps = 3/160 (1%)
 Frame = +2

Query: 44  NSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDAS- 220
           N ++GF+    +S   W K+   P   ++   VG  + VK+++ +   ++L  S K  + 
Sbjct: 306 NDIEGFLH---VSEISWDKNVSHPSHYLS---VGQEIDVKIIDIDPKNRRLRVSLKQLTN 359

Query: 221 --WSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQD 394
             + ++ S+ ++G I +G V ++  +GAF++L   DG      L+H  +  WD  +  +D
Sbjct: 360 RPFDVFESKHQVGDIVEGKVATLTDFGAFLNLGGVDG------LLHNHDAFWDKDKKCKD 413

Query: 395 FLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDK 514
               GD +KV ++ ++ +  +I LS + L   P  E   K
Sbjct: 414 HYKIGDVIKVKILKINKKDKKISLSAKHLVTSPTEEFAQK 453



 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 32/86 (37%), Positives = 44/86 (51%)
 Frame = +2

Query: 266 GIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDA 445
           G+V  +  +G FV  +  DG      LVH SE+S     + + +  EGD V V  +  D 
Sbjct: 205 GVVRQITPFGIFVKFKGIDG------LVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDE 258

Query: 446 EKSRIGLSIRQLEEDPLLETLDKIIP 523
           EK R+ LSI+   EDP  E  DK+ P
Sbjct: 259 EKRRLSLSIKATIEDPWEEIQDKLKP 284

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>RS1_STAS1 (Q49XT0) 30S ribosomal protein S1|
          Length = 393

 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
 Frame = +2

Query: 23  GGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVF 202
           GGL++     +GFVP  L+S           I+D + D  G  + +KV E + A  +++ 
Sbjct: 121 GGLVVDVGQ-RGFVPASLISTDF--------IEDFS-DFEGQVLKLKVEELDPANNRVIL 170

Query: 203 SEKDASWSLYSSQVKI--------GGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHIS 358
           S K A  +L +++ K         G + +G V  + ++GAFV +   DG      LVH+S
Sbjct: 171 SRK-AVEALENAEKKDELLESLNEGDVIEGKVARLTNFGAFVDIGGVDG------LVHVS 223

Query: 359 EVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           E+S + V+  +D ++ G+TV V + +VD +  RI LSI+     P
Sbjct: 224 ELSHEHVKSPEDVVSIGETVNVKIKSVDKDSERISLSIKDTLPSP 268



 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 3/160 (1%)
 Frame = +2

Query: 5   ARGSNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEA 184
           AR +N G  +     + G V    LS  H  K P    +DV    +G +V+VK+   ++ 
Sbjct: 202 ARLTNFGAFV-DIGGVDGLVHVSELSHEH-VKSP----EDVVS--IGETVNVKIKSVDKD 253

Query: 185 EKKLVFSEKDASWSLYSS---QVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHI 355
            +++  S KD   S + S   +   G + +G V  + ++GAFV ++       + GLVHI
Sbjct: 254 SERISLSIKDTLPSPFESIKGEFNEGDVIEGTVVRLANFGAFVEIK-----PGVQGLVHI 308

Query: 356 SEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIR 475
           SE+S   +    + L  G  V V V+ VD E  RI LSI+
Sbjct: 309 SEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIK 348

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>RS1_STAEQ (Q5HP69) 30S ribosomal protein S1|
          Length = 392

 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 7/164 (4%)
 Frame = +2

Query: 23  GGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVF 202
           GGL++     +GFVP  L+S           I+D +    G ++ +KV E +    +++ 
Sbjct: 121 GGLVVDVGQ-RGFVPASLISTDF--------IEDFSV-FDGQTIRIKVEELDPENNRVIL 170

Query: 203 SEK-------DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISE 361
           S K       DA  +     +  G + DG V  + ++GAF+ +   DG      LVH+SE
Sbjct: 171 SRKAVEQLENDAKKASILDSLNEGDVIDGKVARLTNFGAFIDIGGVDG------LVHVSE 224

Query: 362 VSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           +S + VQ  ++ ++ G+ VKV V +V+ +  RI LSI+     P
Sbjct: 225 LSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTP 268



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDASWSLYSS---QVKIGGIYDGIVGSVFHYGAFVHL 310
           VG +V VKV    +  +++  S KD   + + +   +     + +G V  + ++GAFV +
Sbjct: 239 VGEAVKVKVKSVEKDSERISLSIKDTLPTPFENIKGKFHEDDVIEGTVVRLANFGAFVEI 298

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIR 475
                   + GLVHISE+    +    + L  G  V V ++ +D +  RI LSI+
Sbjct: 299 A-----PSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIK 348

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>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase mog-5 (EC 3.6.1.-) (Sex determination protein
           mog-5) (Masculinization of germ line protein 5)
          Length = 1200

 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 41/114 (35%), Positives = 65/114 (57%)
 Frame = +2

Query: 209 KDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDV 388
           +D   +  S   +IG IYDG V S+  +GAF+ L+         GLVHIS++  + VQ V
Sbjct: 220 RDDGGARKSEVAEIGKIYDGRVNSIQSFGAFITLE--GFRQKQEGLVHISQIRNERVQTV 277

Query: 389 QDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDKIIPLEPDLSPDA 550
            D L  G+ VKV V  +  E  +I LS+++++++    + + + P E DL+PDA
Sbjct: 278 ADVLKRGENVKVKVNKI--ENGKISLSMKEVDQN----SGEDLNPRETDLNPDA 325

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>RS1_RHIME (P14129) 30S ribosomal protein S1|
          Length = 568

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
 Frame = +2

Query: 110 RPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYSSQ-------VKIGGIYDG 268
           RPI+DVT  L+ +    ++++ ++    +V S +       + Q       ++ G + +G
Sbjct: 145 RPIRDVTP-LMHNPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEG 203

Query: 269 IVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAE 448
           +V ++  YGAFV L   DG      L+H+++++W  V    + L  G  VKV ++ ++ E
Sbjct: 204 VVKNITDYGAFVDLGGIDG------LLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQE 257

Query: 449 KSRIGLSIRQLEEDP 493
             RI L ++QLE DP
Sbjct: 258 THRISLGMKQLESDP 272



 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           +G  V V+++  N+   ++    K      W    ++  +G    G V ++  YGAFV L
Sbjct: 243 IGQQVKVQIIRINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVEL 302

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQ-DVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 487
           +       + GL+HISE+SW          L+    V V+V+ VD  K RI L ++Q  E
Sbjct: 303 E-----PGIEGLIHISEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLE 357

Query: 488 DP 493
           +P
Sbjct: 358 NP 359



 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 4/146 (2%)
 Frame = +2

Query: 77  LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDA---SWSLYSSQVK 247
           +S   W K    P + ++       V V V+E +  ++++    K      W  ++    
Sbjct: 312 ISEMSWTKKNVHPGKILS---TSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHSHP 368

Query: 248 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLV-QDVQDFLTEGDTVKV 424
            G   +G V +   +G F+ L   DG+  + G+VH+S++ W+   + V +   +GD V+ 
Sbjct: 369 AGTEVEGEVKNKTEFGLFIGL---DGD--VDGMVHLSDLDWNRPGEQVIEEFNKGDVVRA 423

Query: 425 IVVNVDAEKSRIGLSIRQLEEDPLLE 502
           +V++VD +K RI L I+QL  D + E
Sbjct: 424 VVLDVDVDKERISLGIKQLGRDAVGE 449

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>YABR_BACSU (P37560) Hypothetical protein yabR|
          Length = 128

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 37/96 (38%), Positives = 59/96 (61%)
 Frame = +2

Query: 242 VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVK 421
           +++G    G +  + ++GAFV L  P G+   TGLVHISEV+ + V+D+ D L  GD V+
Sbjct: 3   IEVGSKLQGKITGITNFGAFVEL--PGGS---TGLVHISEVADNYVKDINDHLKVGDQVE 57

Query: 422 VIVVNVDAEKSRIGLSIRQLEEDPLLETLDKIIPLE 529
           V V+NV+ +  +IGLSI++ ++ P     +   P E
Sbjct: 58  VKVINVEKD-GKIGLSIKKAKDRPQARPRNDFRPKE 92

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>RS1_HELPY (P56008) 30S ribosomal protein S1|
          Length = 556

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 40/160 (25%), Positives = 80/160 (50%), Gaps = 3/160 (1%)
 Frame = +2

Query: 44  NSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDAS- 220
           N ++GF+    +S   W K+   P   ++   VG  + VK+++ +   ++L  S K  + 
Sbjct: 310 NDIEGFLH---VSEISWDKNVSHPNNYLS---VGQEIDVKIIDIDPKNRRLRVSLKQLTN 363

Query: 221 --WSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQD 394
             + ++ S+ ++G + +G V ++  +GAF++L   DG      L+H  +  WD  +  +D
Sbjct: 364 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDG------LLHNHDAFWDKDKKCKD 417

Query: 395 FLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDK 514
               GD +KV ++ ++ +  +I LS + L   P  E   K
Sbjct: 418 HYKIGDVIKVKILKINKKDKKISLSAKHLVTSPTEEFAQK 457



 Score = 59.3 bits (142), Expect = 8e-09
 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
 Frame = +2

Query: 143 GSSVSVKVVEANEAEKKLVFSEK---DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQ 313
           G  V VK +  +  +++L  S K   +  W     ++K G     +V ++ HYG FV + 
Sbjct: 250 GDEVYVKAIAYDAEKRRLSLSIKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYGVFVDI- 308

Query: 314 FPDGNYHLTGLVHISEVSWDL-VQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEED 490
              GN  + G +H+SE+SWD  V    ++L+ G  + V ++++D +  R+ +S++QL   
Sbjct: 309 ---GN-DIEGFLHVSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNR 364

Query: 491 P 493
           P
Sbjct: 365 P 365



 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 32/86 (37%), Positives = 45/86 (52%)
 Frame = +2

Query: 266 GIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDA 445
           G+V  +  +G FV  +       + GLVH SE+S     + + +  EGD V V  +  DA
Sbjct: 209 GVVRQITPFGIFVEAK------GIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDA 262

Query: 446 EKSRIGLSIRQLEEDPLLETLDKIIP 523
           EK R+ LSI+   EDP  E  DK+ P
Sbjct: 263 EKRRLSLSIKATIEDPWEEIQDKLKP 288

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>RS1_CHLPN (Q9Z8M3) 30S ribosomal protein S1|
          Length = 580

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 3/162 (1%)
 Frame = +2

Query: 14  SNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKK 193
           +N G  +     ++G +    +S   W K    P +   K   G+SV   ++  ++  KK
Sbjct: 403 TNYGAFVELEPGIEGLIH---ISDMSWIKKVSHPSELFKK---GNSVEAVILSVDKESKK 456

Query: 194 LVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEV 364
           +    K  S   W+   +    G +  G+V  +  +GAFV LQ       + GL+H+SE+
Sbjct: 457 ITLGVKQLSSNPWNEIEAMFPAGTVISGVVTKITAFGAFVELQ-----NGIEGLIHVSEL 511

Query: 365 SWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEED 490
           S      ++D ++ G+ V   V+ +D +  ++ LS+++   D
Sbjct: 512 SDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEYLAD 553



 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 44/174 (25%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
 Frame = +2

Query: 23  GGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVF 202
           GGLI+    M+ F+P   +          + I+++  D VG     K+++ N   + +V 
Sbjct: 147 GGLIVDIG-MEAFLPGSQID--------NKKIKNLD-DYVGKVCEFKILKINVERRNIVV 196

Query: 203 SEKD-------ASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISE 361
           S ++       +  +    Q+ IG    G+V ++  +G F+ L   DG   + GL+HI++
Sbjct: 197 SRRELLEAERISKKAELIEQISIGEYRKGVVKNITDFGVFLDL---DG---IDGLLHITD 250

Query: 362 VSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDKIIP 523
           ++W  ++   + +     ++VI+++VD EK R+ L ++Q E +P  E ++K  P
Sbjct: 251 MTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNP-WEDIEKKYP 303



 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 4/143 (2%)
 Frame = +2

Query: 77  LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDAS---WSLYSSQVK 247
           +S   W K+   P + V K   G  V   V+   + E K+    K      W     +  
Sbjct: 334 ISEMSWVKNIVDPSEVVNK---GDEVEAIVLSIQKDEGKISLGLKQTERNPWDNIEEKYP 390

Query: 248 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSW-DLVQDVQDFLTEGDTVKV 424
           IG   +  + ++ +YGAFV L+       + GL+HIS++SW   V    +   +G++V+ 
Sbjct: 391 IGLHVNAEIKNLTNYGAFVELE-----PGIEGLIHISDMSWIKKVSHPSELFKKGNSVEA 445

Query: 425 IVVNVDAEKSRIGLSIRQLEEDP 493
           ++++VD E  +I L ++QL  +P
Sbjct: 446 VILSVDKESKKITLGVKQLSSNP 468



 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 25/77 (32%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
 Frame = +2

Query: 266 GIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSW-DLVQDVQDFLTEGDTVKVIVVNVD 442
           G +  +  YGAF+ ++  +G   + GL+HISE+SW   + D  + + +GD V+ IV+++ 
Sbjct: 310 GKIVKLLPYGAFIEIE--EG---IEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIVLSIQ 364

Query: 443 AEKSRIGLSIRQLEEDP 493
            ++ +I L ++Q E +P
Sbjct: 365 KDEGKISLGLKQTERNP 381

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>RS1_STAAW (Q8NWM8) 30S ribosomal protein S1|
          Length = 391

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 7/164 (4%)
 Frame = +2

Query: 23  GGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVF 202
           GGL++     +GFVP  L+S           I+D +    G ++ +KV E +    +++ 
Sbjct: 121 GGLVVDVGQ-RGFVPASLISTDF--------IEDFSV-FDGQTIRIKVEELDPENNRVIL 170

Query: 203 SEK-------DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISE 361
           S K       DA        +  G + DG V  +  +GAF+ +   DG      LVH+SE
Sbjct: 171 SRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDG------LVHVSE 224

Query: 362 VSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           +S + VQ  ++ ++ G  VKV + ++D +  RI LSI+     P
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTP 268



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDASWSLYSS---QVKIGGIYDGIVGSVFHYGAFVHL 310
           +G  V VK+   +   +++  S KD   + + +   Q     + +G+V  + ++GAFV +
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIR 475
                   + GLVHISE++   +    + L  G  V V ++ +D E  R+ LSI+
Sbjct: 299 A-----PGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIK 348

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>RS1_STAAS (Q6G987) 30S ribosomal protein S1|
          Length = 391

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 7/164 (4%)
 Frame = +2

Query: 23  GGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVF 202
           GGL++     +GFVP  L+S           I+D +    G ++ +KV E +    +++ 
Sbjct: 121 GGLVVDVGQ-RGFVPASLISTDF--------IEDFSV-FDGQTIRIKVEELDPENNRVIL 170

Query: 203 SEK-------DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISE 361
           S K       DA        +  G + DG V  +  +GAF+ +   DG      LVH+SE
Sbjct: 171 SRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDG------LVHVSE 224

Query: 362 VSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           +S + VQ  ++ ++ G  VKV + ++D +  RI LSI+     P
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTP 268



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDASWSLYSS---QVKIGGIYDGIVGSVFHYGAFVHL 310
           +G  V VK+   +   +++  S KD   + + +   Q     + +G+V  + ++GAFV +
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIR 475
                   + GLVHISE++   +    + L  G  V V ++ +D E  R+ LSI+
Sbjct: 299 A-----PGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIK 348

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>RS1_STAAR (Q6GGT5) 30S ribosomal protein S1|
          Length = 391

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 7/164 (4%)
 Frame = +2

Query: 23  GGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVF 202
           GGL++     +GFVP  L+S           I+D +    G ++ +KV E +    +++ 
Sbjct: 121 GGLVVDVGQ-RGFVPASLISTDF--------IEDFSV-FDGQTIRIKVEELDPENNRVIL 170

Query: 203 SEK-------DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISE 361
           S K       DA        +  G + DG V  +  +GAF+ +   DG      LVH+SE
Sbjct: 171 SRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDG------LVHVSE 224

Query: 362 VSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           +S + VQ  ++ ++ G  VKV + ++D +  RI LSI+     P
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTP 268



 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDASWSLYSS---QVKIGGIYDGIVGSVFHYGAFVHL 310
           +G  V VK+   +   +++  S KD   + + +   Q       +G+V  + ++GAFV +
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDDIEGVVVRLANFGAFVEI 298

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIR 475
                   + GLVHISE++   +    + L  G  V V ++ +D E  R+ LSI+
Sbjct: 299 A-----PGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIK 348

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>RS1_STAAC (Q5HFU7) 30S ribosomal protein S1|
          Length = 391

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 7/164 (4%)
 Frame = +2

Query: 23  GGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVF 202
           GGL++     +GFVP  L+S           I+D +    G ++ +KV E +    +++ 
Sbjct: 121 GGLVVDVGQ-RGFVPASLISTDF--------IEDFSV-FDGQTIRIKVEELDPENNRVIL 170

Query: 203 SEK-------DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISE 361
           S K       DA        +  G + DG V  +  +GAF+ +   DG      LVH+SE
Sbjct: 171 SRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDG------LVHVSE 224

Query: 362 VSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           +S + VQ  ++ ++ G  VKV + ++D +  RI LSI+     P
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTP 268



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDASWSLYSS---QVKIGGIYDGIVGSVFHYGAFVHL 310
           +G  V VK+   +   +++  S KD   + + +   Q     + +G+V  + ++GAFV +
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIR 475
                   + GLVHISE++   +    + L  G  V V ++ +D E  R+ LSI+
Sbjct: 299 A-----PGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIK 348

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>RS1_CHLTR (O84100) 30S ribosomal protein S1|
          Length = 569

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 45/174 (25%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
 Frame = +2

Query: 23  GGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVF 202
           GGLI+    M+ F+P   +          + I+++  D VG     K+++ N   + +V 
Sbjct: 147 GGLIVDIG-MEAFLPGSQID--------NKKIKNLD-DYVGKVCEFKILKINVDRRNVVV 196

Query: 203 SEKD-------ASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISE 361
           S ++       +  +    Q+ IG    GIV ++  +G F+ L   DG   + GL+HI++
Sbjct: 197 SRRELLEAERISKKAELIEQITIGERRKGIVKNITDFGVFLDL---DG---IDGLLHITD 250

Query: 362 VSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDKIIP 523
           ++W  ++   + +     ++VI+++VD EK R+ L ++Q E +P  E ++K  P
Sbjct: 251 MTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNP-WEDIEKKYP 303



 Score = 59.3 bits (142), Expect = 8e-09
 Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 3/158 (1%)
 Frame = +2

Query: 14  SNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKK 193
           +N G  +     ++G +    +S   W K    P +   K   G++V   ++  ++  KK
Sbjct: 403 TNYGAFVELEPGIEGLIH---ISDMSWIKKVSHPSELFKK---GNTVEAVILSVDKESKK 456

Query: 194 LVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEV 364
           +    K  +   W        +G    G+V  +  +GAFV LQ       + GL+H+SE+
Sbjct: 457 ITLGVKQLTPNPWDEIEVMFPVGSDISGVVTKITAFGAFVELQ-----NGIEGLIHVSEL 511

Query: 365 SWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQ 478
           S      ++D L+ GD V   V+ +D +  ++ LSI++
Sbjct: 512 SEKPFAKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIKE 549



 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 29/116 (25%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
 Frame = +2

Query: 152 VSVKVVEANEAEKKLVFSEKDAS-WSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGN 328
           V +  V+  +    L   +K+ + W     +   G    G +  +  YGAF+ ++  +G 
Sbjct: 271 VIILSVDKEKGRVALGLKQKEHNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEIE--EG- 327

Query: 329 YHLTGLVHISEVSW-DLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
             + GL+H+SE+SW   + D  + + +GD V+V+V+++  ++ +I L ++Q + +P
Sbjct: 328 --IEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

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>RS1_CHLMU (P38016) 30S ribosomal protein S1 (70 kDa antigen)|
          Length = 570

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 45/174 (25%), Positives = 88/174 (50%), Gaps = 7/174 (4%)
 Frame = +2

Query: 23  GGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVF 202
           GGLI+    M+ F+P   +          + I+++  D VG     K+++ N   + +V 
Sbjct: 147 GGLIVDIG-MEAFLPGSQID--------NKKIKNLD-DYVGKVCEFKILKINVDRRNVVV 196

Query: 203 SEKD-------ASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISE 361
           S ++       +  +    Q+ IG    GIV ++  +G F+ L   DG   + GL+HI++
Sbjct: 197 SRRELLEAERISKKAELIEQITIGERRKGIVKNITDFGVFLDL---DG---IDGLLHITD 250

Query: 362 VSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDKIIP 523
           ++W  ++   + +     ++VI+++VD EK R+ L ++Q E +P  E ++K  P
Sbjct: 251 MTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNP-WEDIEKKYP 303



 Score = 59.3 bits (142), Expect = 8e-09
 Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 3/158 (1%)
 Frame = +2

Query: 14  SNTGGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKK 193
           +N G  +     ++G +    +S   W K    P +   K   G++V   ++  ++  KK
Sbjct: 403 TNYGAFVELEPGIEGLIH---ISDMSWIKKVSHPSELFKK---GNTVEAVILSVDKESKK 456

Query: 194 LVFSEKDAS---WSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEV 364
           +    K  +   W    +   +G    GIV  +  +GAFV LQ       + GL+H+S++
Sbjct: 457 ITLGVKQLTPNPWDEIEAMFPVGSDISGIVTKITAFGAFVELQ-----NGIEGLIHVSKL 511

Query: 365 SWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQ 478
           S      ++D L+ GD V   V+ +D +  ++ LSI++
Sbjct: 512 SDKPFAKIEDILSIGDKVSAKVIKLDPDHKKVSLSIKE 549



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 30/116 (25%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
 Frame = +2

Query: 152 VSVKVVEANEAEKKLVFSEKDAS-WSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGN 328
           V +  V+  +    L   +K+ + W     +   G    G +  +  YGAF+ ++  +G 
Sbjct: 271 VIILSVDKEKGRVALGLKQKEHNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEIE--EG- 327

Query: 329 YHLTGLVHISEVSW-DLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
             + GL+H+SE+SW   + D  + + +GD V+V+V+++  ++ +I L ++Q E +P
Sbjct: 328 --IEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTEHNP 381

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>RRP5_YEAST (Q05022) rRNA biogenesis protein RRP5|
          Length = 1729

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 8/162 (4%)
 Frame = +2

Query: 14   SNTGGLILKYNSMQGFVPNPLLSPAH---WCKDPKRPIQDVTKDLVGSSVSVKVVEANEA 184
            ++ G  +     ++ FVP   LS ++   W K  K P+Q V           KVV  +E 
Sbjct: 1188 NDKGIFVYLSRKVEAFVPVSKLSDSYLKEWKKFYK-PMQYVLG---------KVVTCDED 1237

Query: 185  EK-KLVFSEKDASWSLYS----SQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLV 349
             +  L   E + +  L      S +K G +++G + SV  +G FV L   D   ++TGL 
Sbjct: 1238 SRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKSVTDFGVFVKL---DNTVNVTGLA 1294

Query: 350  HISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIR 475
            HI+E++    +D+      GD VK IV+  + EK +I LS++
Sbjct: 1295 HITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISLSLK 1336



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 4/135 (2%)
 Frame = +2

Query: 116  IQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYS----SQVKIGGIYDGIVGSV 283
            +++  +D + + +   V+  +E  KK+  S + A+    S      +K G I DGIV +V
Sbjct: 1128 LKEAFEDKINNVIPTTVLSVDEQNKKIELSLRPATAKTRSIKSHEDLKQGEIVDGIVKNV 1187

Query: 284  FHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIG 463
               G FV+L     +  +   V +S++S   +++ + F      V   VV  D E SRI 
Sbjct: 1188 NDKGIFVYL-----SRKVEAFVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCD-EDSRIS 1241

Query: 464  LSIRQLEEDPLLETL 508
            L++R+ E +  L+ L
Sbjct: 1242 LTLRESEINGDLKVL 1256



 Score = 31.2 bits (69), Expect = 2.3
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = +2

Query: 335 LTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDPL--LETL 508
           L+G +  SE+S   V+  ++ L  G TV V +++VDA++ RI  + +   E      +T+
Sbjct: 630 LSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQQKDTI 689

Query: 509 DKIIP 523
           + I+P
Sbjct: 690 ENIVP 694

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>RS1_STAAN (Q7A5J0) 30S ribosomal protein S1|
          Length = 391

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 7/164 (4%)
 Frame = +2

Query: 23  GGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVF 202
           GGL++     +GFVP  L+S           I+D +    G ++ +KV E +    +++ 
Sbjct: 121 GGLVVDVGQ-RGFVPASLISTDF--------IEDFSV-FDGQTIRIKVEELDPENNRVIL 170

Query: 203 SEK-------DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISE 361
           S K       DA        +  G +  G V  +  +GAF+ +   DG      LVH+SE
Sbjct: 171 SRKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVDG------LVHVSE 224

Query: 362 VSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           +S + VQ  ++ ++ G  VKV + ++D +  RI LSI+     P
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTP 268



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDASWSLYSS---QVKIGGIYDGIVGSVFHYGAFVHL 310
           +G  V VK+   +   +++  S KD   + + +   Q     + +G+V  + ++GAFV +
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIR 475
                   + GLVHISE++   +    + L  G  V V ++ +D E  R+ LSI+
Sbjct: 299 A-----PGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIK 348

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>RS1_STAAM (Q99U14) 30S ribosomal protein S1|
          Length = 391

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 7/164 (4%)
 Frame = +2

Query: 23  GGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVF 202
           GGL++     +GFVP  L+S           I+D +    G ++ +KV E +    +++ 
Sbjct: 121 GGLVVDVGQ-RGFVPASLISTDF--------IEDFSV-FDGQTIRIKVEELDPENNRVIL 170

Query: 203 SEK-------DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISE 361
           S K       DA        +  G +  G V  +  +GAF+ +   DG      LVH+SE
Sbjct: 171 SRKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVDG------LVHVSE 224

Query: 362 VSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           +S + VQ  ++ ++ G  VKV + ++D +  RI LSI+     P
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTP 268



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDASWSLYSS---QVKIGGIYDGIVGSVFHYGAFVHL 310
           +G  V VK+   +   +++  S KD   + + +   Q     + +G+V  + ++GAFV +
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEI 298

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIR 475
                   + GLVHISE++   +    + L  G  V V ++ +D E  R+ LSI+
Sbjct: 299 A-----PGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIK 348

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>YHGF_ECOLI (P46837) Protein yhgF|
          Length = 773

 Score = 56.2 bits (134), Expect = 7e-08
 Identities = 35/81 (43%), Positives = 48/81 (59%)
 Frame = +2

Query: 251 GGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIV 430
           G I +G V +V ++GAFV     D   H  GLVHIS +S   V+D    +  GD VKV V
Sbjct: 651 GMILEGAVTNVTNFGAFV-----DIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKV 705

Query: 431 VNVDAEKSRIGLSIRQLEEDP 493
           + VD ++ RI L++R L+E P
Sbjct: 706 LEVDLQRKRIALTMR-LDEQP 725

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>RS1_STAHJ (Q4L6I1) 30S ribosomal protein S1|
          Length = 392

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 7/164 (4%)
 Frame = +2

Query: 23  GGLILKYNSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVF 202
           GGL++     +GFVP  L+S           I+D +    G ++ +KV E +    +++ 
Sbjct: 121 GGLVVDVGQ-RGFVPASLISTDF--------IEDFSV-FDGQTIRIKVEELDPENNRVIL 170

Query: 203 SEK-------DASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISE 361
           S K       D   +     +  G +  G V  + ++GAFV +   DG      LVH+SE
Sbjct: 171 SRKAVEQAENDVKKASLLESLNAGDVIKGKVARLTNFGAFVDIGGVDG------LVHVSE 224

Query: 362 VSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
           +S + V   +D ++ G  V V V +V+ +  RI LSI+     P
Sbjct: 225 LSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTP 268



 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDASWSLYSS---QVKIGGIYDGIVGSVFHYGAFVHL 310
           VG  V VKV    +  +++  S KD   + + S   Q     + +G V  + ++GAFV +
Sbjct: 239 VGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIKGQFHEDDVIEGKVVRLANFGAFVEI 298

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIR-QLEE 487
                   + GLVHISE++ + +    + L  G  V V ++ +D E  RI LSI+  L +
Sbjct: 299 A-----PGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGIDEENERISLSIKATLPK 353

Query: 488 DPLLETLD 511
           + ++E+ D
Sbjct: 354 EDVVESDD 361

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>Y568_HAEIN (P71353) Hypothetical protein HI0568|
          Length = 762

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 32/80 (40%), Positives = 46/80 (57%)
 Frame = +2

Query: 236 SQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDT 415
           + +K G I +G V +V ++GAFV     D   H  GLVHIS +S   V+D    +  G+ 
Sbjct: 646 TDLKSGMILEGTVTNVTNFGAFV-----DIGVHQDGLVHISSLSDKFVEDPHQVVKTGNI 700

Query: 416 VKVIVVNVDAEKSRIGLSIR 475
           VKV V+ VD  + RI L++R
Sbjct: 701 VKVKVLEVDVPRKRIALTMR 720

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>TEX_BORPE (Q45388) Protein tex|
          Length = 791

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 29/75 (38%), Positives = 45/75 (60%)
 Frame = +2

Query: 251 GGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIV 430
           G + +G+V +V ++GAFV     D   H  GLVHIS ++   V+D +D +  G TV V V
Sbjct: 670 GMVLEGVVTNVANFGAFV-----DIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKV 724

Query: 431 VNVDAEKSRIGLSIR 475
           + VD  + R+ L++R
Sbjct: 725 LEVDVARKRVALTMR 739

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>PNP_PSEPU (O87792) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 701

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 34/83 (40%), Positives = 52/83 (62%)
 Frame = +2

Query: 233 SSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGD 412
           +++ +IG IY G V  +  +GAFV++  P  +    GLVHIS +S   V+ V D L EG 
Sbjct: 617 TAEAEIGKIYVGKVERIVDFGAFVNI-LPGKD----GLVHISMLSDARVEKVTDILKEGQ 671

Query: 413 TVKVIVVNVDAEKSRIGLSIRQL 481
            V+V+V++VD  + RI LSI+ +
Sbjct: 672 EVEVLVLDVD-NRGRIKLSIKDV 693

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>PNP_ECOLI (P05055) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 711

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 35/109 (32%), Positives = 57/109 (52%)
 Frame = +2

Query: 233 SSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGD 412
           ++++++G +Y G V  +  +GAFV +          GLVHIS+++   V+ V D+L  G 
Sbjct: 616 TAEIEVGRVYTGKVTRIVDFGAFVAI-----GGGKEGLVHISQIADKRVEKVTDYLQMGQ 670

Query: 413 TVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDKIIPLEPDLSPDAEAA 559
            V V V+ VD  + RI LSI++  E             +P  +P+A AA
Sbjct: 671 EVPVKVLEVD-RQGRIRLSIKEATEQS-----------QPAAAPEAPAA 707

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>IF2A_PYRFU (Q8U1R5) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 275

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 29/79 (36%), Positives = 45/79 (56%)
 Frame = +2

Query: 251 GGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIV 430
           G +    V  V +YGAF+ L    G     G +HISEV+   V++++D+L EG  V   V
Sbjct: 12  GELVVATVKRVHNYGAFLDLDEYPGK---EGFMHISEVASTWVKNIRDYLREGQKVVAKV 68

Query: 431 VNVDAEKSRIGLSIRQLEE 487
           + VD +K  I LS+R++ +
Sbjct: 69  IRVDPKKGHIDLSLRRVTQ 87

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>PNP_BUCAP (Q8K9H5) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 707

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 28/84 (33%), Positives = 49/84 (58%)
 Frame = +2

Query: 233 SSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGD 412
           ++++++G IY G V  +  +GAF+ +          GLVHIS++S   V+ V D LT   
Sbjct: 616 TAEIEVGRIYSGKVTRIVDFGAFISIGIGK-----EGLVHISQISNKRVEKVSDHLTVDQ 670

Query: 413 TVKVIVVNVDAEKSRIGLSIRQLE 484
            + V V+ +D  + R+ LSI+++E
Sbjct: 671 IISVKVLEID-RQGRLRLSIKEVE 693

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>IF2A_HALMA (Q5UX22) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 266

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 30/95 (31%), Positives = 50/95 (52%)
 Frame = +2

Query: 230 YSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEG 409
           YS   + G +  G +  +  +G FV L   +G     GL HISEV+   +++V+D + EG
Sbjct: 3   YSGWPEPGELVVGKIDEIEDFGVFVDLDEYEGK---RGLCHISEVASGWIKNVRDHVNEG 59

Query: 410 DTVKVIVVNVDAEKSRIGLSIRQLEEDPLLETLDK 514
            TV   V++VD    +I LSI+ + +    E + +
Sbjct: 60  QTVVAKVLDVDESAQQIDLSIKDVNDHQRKEKIQE 94

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>PNP_HAEIN (P44584) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 709

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 37/111 (33%), Positives = 61/111 (54%)
 Frame = +2

Query: 149 SVSVKVVEANEAEKKLVFSEKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGN 328
           +V +  V++N A+  +   E+  +      +V+ G IY G V  +  +GAFV +    GN
Sbjct: 593 TVKIAAVDSNAAKNVMGRIEEIVA------EVEAGVIYKGKVTRLADFGAFVAIV---GN 643

Query: 329 YHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQL 481
               GLVHIS+++ + V+ V D+L  G  V V VV +D  + RI L+++ L
Sbjct: 644 KE--GLVHISQIAEERVEKVSDYLQVGQEVNVKVVEID-RQGRIRLTMKDL 691

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>IF2A_ARCFU (O29723) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 267

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 30/88 (34%), Positives = 49/88 (55%)
 Frame = +2

Query: 251 GGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIV 430
           G I  G V  V  +GAFV L   +G     G+VHISEV+   ++D+++ + +G  V   V
Sbjct: 17  GEIVIGTVKRVLDFGAFVSLDEYEGR---EGMVHISEVASGWIKDIREHVKKGQKVICKV 73

Query: 431 VNVDAEKSRIGLSIRQLEEDPLLETLDK 514
           ++V+ ++  I LSI+ + E    E L +
Sbjct: 74  LDVNPKRGHIDLSIKDVNERQRREKLQQ 101

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>IF2A_PYRKO (Q5JE49) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 275

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 26/72 (36%), Positives = 43/72 (59%)
 Frame = +2

Query: 272 VGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEK 451
           V ++  YGAF+ L    G     G +HISEV+   V++++D+L EG  +   V+ VD EK
Sbjct: 19  VKNIHPYGAFLTLDEYPGK---EGFMHISEVAPTWVKNIRDYLKEGQKIVAKVIRVDPEK 75

Query: 452 SRIGLSIRQLEE 487
             I LS++++ +
Sbjct: 76  GHIDLSLKRVNQ 87

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>IF2A_METTH (O27363) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 262

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 26/80 (32%), Positives = 44/80 (55%)
 Frame = +2

Query: 251 GGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIV 430
           G +  G V  V +YGAF  L+   G       +HISEVS   V++++DF+ E   +   V
Sbjct: 15  GELVVGTVHKVLNYGAFATLEEYPGK---EAFIHISEVSSGWVKNIRDFVRENQKIVARV 71

Query: 431 VNVDAEKSRIGLSIRQLEED 490
           + V+  K  + +S++++ ED
Sbjct: 72  LRVNPRKGHVDVSMKRIRED 91

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>IF2A_METJA (Q57581) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 266

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 30/79 (37%), Positives = 43/79 (54%)
 Frame = +2

Query: 251 GGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIV 430
           G I  G V  V  YGAFV L    G     G++HISEV+   V++++D +  G  V   V
Sbjct: 12  GDIVIGTVKDVKPYGAFVELLEYPGK---EGMIHISEVTSGWVKNIRDHVKVGQRVVAKV 68

Query: 431 VNVDAEKSRIGLSIRQLEE 487
           + VD  K  I LS++++ E
Sbjct: 69  LRVDERKGHIDLSLKRVTE 87

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>IF2A_PYRHO (O58655) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 275

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 26/72 (36%), Positives = 41/72 (56%)
 Frame = +2

Query: 272 VGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEK 451
           V  + +YGAF+ L    G       +HISEV+   V++++D+L EG  V   V+ VD  K
Sbjct: 19  VKRIHNYGAFLELDEYPGK---EAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRK 75

Query: 452 SRIGLSIRQLEE 487
             I LS+R++ +
Sbjct: 76  GHIDLSLRRVTQ 87

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>IF2A_PYRAB (Q9V0E4) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 275

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 26/72 (36%), Positives = 41/72 (56%)
 Frame = +2

Query: 272 VGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEK 451
           V  + +YGAF+ L    G       +HISEV+   V++++D+L EG  V   V+ VD  K
Sbjct: 19  VKRIHNYGAFLELDEYPGK---EAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRK 75

Query: 452 SRIGLSIRQLEE 487
             I LS+R++ +
Sbjct: 76  GHIDLSLRRVTQ 87

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>PNP_RICPR (Q9ZD43) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 745

 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 17/141 (12%)
 Frame = +2

Query: 119 QDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYSS-----------------QVK 247
           +D  KD++G    + + E  E     +    D + S+Y+S                 + +
Sbjct: 563 KDKIKDIIGPGGKI-IKEICETSNAKIDISDDGTVSIYASDRDKIKIALDKIKAIAVEPE 621

Query: 248 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVI 427
           IG I++G V  V   GAF++     GN    G VHISE+S   +  V   L +GD VKV 
Sbjct: 622 IGEIFNGTVMKVLDSGAFINYL---GNKD--GFVHISEISDARIDKVSSVLKQGDIVKVK 676

Query: 428 VVNVDAEKSRIGLSIRQLEED 490
           ++  D  K +  L+I+   +D
Sbjct: 677 LIGFD-NKGKAKLTIKNAYKD 696

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>PNP_PHOLU (P41121) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase) (CAP87K)
          Length = 709

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 27/82 (32%), Positives = 47/82 (57%)
 Frame = +2

Query: 233 SSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGD 412
           ++++++G IY G V  +  +GAFV +          GLVHIS+++   V+ V D+L  G 
Sbjct: 616 TAEIEVGRIYAGKVTRIVDFGAFVAI-----GGGKEGLVHISQIADKRVEKVADYLQVGQ 670

Query: 413 TVKVIVVNVDAEKSRIGLSIRQ 478
              V V+ +D  + R+ LSI++
Sbjct: 671 ETSVKVLEID-RQGRVRLSIKE 691

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>IF2A_HALSA (Q9HRT8) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 267

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
 Frame = +2

Query: 251 GGIYDGIVGSVFHYGAFVHL-QFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVI 427
           G +  G V  +  +G FV L Q+ D      GLVH+SEV+   +++V+D + E  TV   
Sbjct: 10  GELVVGKVDDIEDFGVFVDLEQYQDKR----GLVHVSEVASGWIKNVRDHVNEDQTVVAK 65

Query: 428 VVNVDAEKSRIGLSIRQLEEDPLLETLDK 514
           V+ VD    +I LS++ + +    +T+ +
Sbjct: 66  VLGVDESAQQIDLSLKDVNDHQHSDTIQE 94

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>PNP_BUCAI (P57454) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 707

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 27/88 (30%), Positives = 48/88 (54%)
 Frame = +2

Query: 233 SSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGD 412
           ++++++G IY G V  +  +GAFV +          GLVHIS++S   V  V + L    
Sbjct: 616 TAEIEVGRIYSGKVTRIVDFGAFVSIGLGK-----EGLVHISQISDKRVDKVSNHLKIDQ 670

Query: 413 TVKVIVVNVDAEKSRIGLSIRQLEEDPL 496
            + V V+ +D  + R+ LSI++++   L
Sbjct: 671 IISVKVLEID-RQGRLRLSIKEIDSSIL 697

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>PNP_YEREN (O34275) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 706

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 28/82 (34%), Positives = 46/82 (56%)
 Frame = +2

Query: 233 SSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGD 412
           ++++++  IY G V  +  +GAFV +          GLVHIS+++   V  V D+L  G 
Sbjct: 616 TAEIEVNRIYAGKVTRIVDFGAFVAI-----GGGKEGLVHISQIADKRVDKVTDYLQMGQ 670

Query: 413 TVKVIVVNVDAEKSRIGLSIRQ 478
            V V V+ VD  + RI LS+++
Sbjct: 671 EVPVKVIEVD-RQGRIRLSMKE 691

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>DHX8_HUMAN (Q14562) ATP-dependent RNA helicase DHX8 (EC 3.6.1.-) (DEAH box|
           protein 8) (RNA helicase HRH1)
          Length = 1220

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
 Frame = +2

Query: 248 IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWD-LVQDVQDFLTEGDTVKV 424
           IG IY+G V S+  +G FV L+     +   GLVHISE+  +  V +V D +++G  VKV
Sbjct: 264 IGDIYNGKVTSIMQFGCFVQLEGLRKRWE--GLVHISELRREGRVANVADVVSKGQRVKV 321

Query: 425 IVVNVDAEKSRIGLSIRQLEED 490
            V++    K+   LS++ ++++
Sbjct: 322 KVLSFTGTKT--SLSMKDVDQE 341

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>IF2A_METKA (Q8TY86) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 267

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 28/86 (32%), Positives = 46/86 (53%)
 Frame = +2

Query: 251 GGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIV 430
           G I    V  V  +GAFV L    G   + G +HISEV+   V++++D++ EG  V   V
Sbjct: 12  GEIVMATVERVEDHGAFVTLDEYPG---VDGYIHISEVASGWVKNIRDYVKEGQKVVAKV 68

Query: 431 VNVDAEKSRIGLSIRQLEEDPLLETL 508
           + V+ ++    LS+R++ +    E L
Sbjct: 69  IRVNPKRKYANLSLRKVTDHQRKEKL 94

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>PNP_BACSU (P50849) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15)
          Length = 704

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 28/77 (36%), Positives = 46/77 (59%)
 Frame = +2

Query: 239 QVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTV 418
           +V++G +Y G V  +  +GAFV + F   +    GLVHISE++ + V  V+D +  GD +
Sbjct: 618 EVEVGQLYLGKVKRIEKFGAFVEI-FSGKD----GLVHISELALERVGKVEDVVKIGDEI 672

Query: 419 KVIVVNVDAEKSRIGLS 469
            V V  +D ++ R+ LS
Sbjct: 673 LVKVTEID-KQGRVNLS 688

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>DHX8_SCHPO (O42643) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase C10F6.02c (EC 3.6.1.-)
          Length = 1168

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
 Frame = +2

Query: 254 GIYDGIVGSVFHYGAFVHLQFPDGNYHLT-GLVHISEVSWD-LVQDVQDFLTEGDTVKVI 427
           GIY G+V  +  +GAFV L   DG    T GLVHIS +  +  +    + ++ G  V V 
Sbjct: 208 GIYSGVVSGIKDFGAFVTL---DGFRKRTDGLVHISNIQLNGRLDHPSEAVSYGQPVFVK 264

Query: 428 VVNVDAEKSRIGLSIRQLEE 487
           V+ +D    RI LS++++ +
Sbjct: 265 VIRIDESAKRISLSMKEVNQ 284

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>PNP_BUCBP (Q89AF8) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 693

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 27/81 (33%), Positives = 44/81 (54%)
 Frame = +2

Query: 233 SSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGD 412
           +++V++G +Y G V  +  +GAFV +          GLVHIS+++   V  V D L    
Sbjct: 616 TAEVEVGSVYTGKVTRIVDFGAFVSIGIGK-----EGLVHISQIAHKRVDKVSDHLRLHQ 670

Query: 413 TVKVIVVNVDAEKSRIGLSIR 475
            + V V+ VD  + R+ LSI+
Sbjct: 671 EIFVKVLEVD-RQGRLRLSIK 690

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>RNR_BUCAP (Q8K917) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein|
           homolog)
          Length = 726

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
 Frame = +2

Query: 62  VPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYS-S 238
           + N LL   +  K     + +VTK  +G   S+    A+EA + ++       W      
Sbjct: 586 IKNLLLKEKNLSKYHLYNLNEVTK--IGLHCSMTERRADEATRDVL------DWLKCDFM 637

Query: 239 QVKIGGIYDGIVGSVFHYGAFVHLQ--FPDGNYHLTGLV----HISEVSWDLV-QDVQDF 397
           Q KIG +  G++ +V  +G FV L   F DG  H+  L+    +   +   L+ +  ++ 
Sbjct: 638 QKKIGDVLTGVISNVTSFGFFVRLNQFFIDGLVHIATLIDDYYYFDSIGLKLIGKSSKNT 697

Query: 398 LTEGDTVKVIVVNVDAEKSRIGLSI 472
              GDT+KV V++V+  + +I LS+
Sbjct: 698 YCLGDTLKVKVISVNLNERKIELSL 722

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>PRP22_YEAST (P24384) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22|
           (EC 3.6.1.-)
          Length = 1145

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 36/148 (24%), Positives = 65/148 (43%)
 Frame = +2

Query: 44  NSMQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASW 223
           N MQ  + N  +   +    P  P+      ++ S+     +EA   E+       D S 
Sbjct: 118 NLMQSGLDNETIFKIYQIASP--PVMKEEVSVLPSTKIPAKIEAKIEEEVQKIESLDPSP 175

Query: 224 SLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLT 403
            L+        +Y+G V ++  +G FV + F     +  GLVHISE+S     D  D + 
Sbjct: 176 VLHK-------VYEGKVRNITTFGCFVQI-FGTRMKNCDGLVHISEMSDQRTLDPHDVVR 227

Query: 404 EGDTVKVIVVNVDAEKSRIGLSIRQLEE 487
           +G  + V V+ +     +I LS++ +++
Sbjct: 228 QGQHIFVEVIKIQ-NNGKISLSMKNIDQ 254

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>IF2A_THEVO (Q97BP2) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 254

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 17/49 (34%), Positives = 32/49 (65%)
 Frame = +2

Query: 341 GLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 487
           G +HISEV+   V+ ++ +L EG  V   V+NV+ E+  + LS++++ +
Sbjct: 37  GYIHISEVATGWVKHIRSYLREGQRVVCKVINVNQERKNVDLSLKRVNQ 85

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>RRP5_HUMAN (Q14690) RRP5 protein homolog (Programmed cell death protein 11)|
          Length = 1871

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 10/166 (6%)
 Frame = +2

Query: 26  GLILKYNS-MQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVF 202
           G+++K    M+G VP P+       K+P++      K  +G  V  +V+  +   KKL+ 
Sbjct: 467 GMLVKVGEQMRGLVP-PMHLADILMKNPEK------KYHIGDEVKCRVLLCDPEAKKLMM 519

Query: 203 SEKDASWSLYSSQVKIGGIY---------DGIVGSVFHYGAFVHLQFPDGNYHLTGLVHI 355
           + K    +L  S++ +   Y          G +  V  YG  V         ++ GLV  
Sbjct: 520 TLKK---TLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFY-----NNVQGLVPK 571

Query: 356 SEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
            E+S + + D +     G  VKV+V+N +  K R+ LS + L  DP
Sbjct: 572 HELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFK-LSSDP 616

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>RNR_HAEIN (P44907) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein|
           homolog)
          Length = 782

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 12/132 (9%)
 Frame = +2

Query: 134 DLVGSSVSVKVVEANEAEKKLVFSEKDASW-SLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           DL+G+  S+    A++A +++      A W      Q  +GG + G++ SV  +G FV L
Sbjct: 617 DLLGNHCSMTERRADDATREV------ADWLKCEYMQDHVGGEFSGVISSVTGFGLFVRL 670

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQ---DVQDFLTE--------GDTVKVIVVNVDAEKSR 457
                +  + GLVHIS +  D  Q     Q  + E        GD V++ V  V  E   
Sbjct: 671 D----DLFIDGLVHISTLENDYYQFDAAKQRLIGENSGMQYRLGDKVRIKVEAVHLENKM 726

Query: 458 IGLSIRQLEEDP 493
           +  S+   E  P
Sbjct: 727 VDFSLIGSERKP 738

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>RNR_BUCAI (P57628) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein|
           homolog)
          Length = 731

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
 Frame = +2

Query: 140 VGSSVSVKVVEANEAEKKLVFSEKDASWSLYSSQVK-IGGIYDGIVGSVFHYGAFVHLQF 316
           +G+  S+    A+EA + ++       W       K IG I +G++ +V  +G FV L  
Sbjct: 615 IGAHCSITERRADEANRDVI------DWLKCDFMYKKIGCILNGVISNVTTFGFFVRL-- 666

Query: 317 PDGNYHLTGLVHISEVSWD-----------LVQDVQDFLTEGDTVKVIVVNVDAEKSRIG 463
               + + GLVHI+ ++ D           + +  ++    GD +KV V++V+  + +I 
Sbjct: 667 --NQFFIDGLVHINSLNDDYYYFDSLGLKLIGKSTKNTYCLGDALKVKVISVNLNEKKIE 724

Query: 464 LSI 472
           LS+
Sbjct: 725 LSL 727

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>DHX8_ARATH (Q38953) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase (EC 3.6.1.-)
          Length = 1168

 Score = 37.4 bits (85), Expect = 0.033
 Identities = 29/104 (27%), Positives = 50/104 (48%)
 Frame = +2

Query: 257 IYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVN 436
           +Y G V  V   G FV      G     GLVH+S+++   V   ++F+     V V V++
Sbjct: 216 VYKGRVTRVMDAGCFVQFDKFRGK---EGLVHVSQMATRRVDKAKEFVKRDMEVYVKVIS 272

Query: 437 VDAEKSRIGLSIRQLEEDPLLETLDKIIPLEPDLSPDAEAASSP 568
           + ++K    LS+R ++++    T   +IPL      D  + S+P
Sbjct: 273 ISSDK--YSLSMRDVDQN----TGRDLIPLRKPSDEDDSSRSNP 310

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>IF2A_THEAC (Q9HIX3) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 254

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 16/49 (32%), Positives = 31/49 (63%)
 Frame = +2

Query: 341 GLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVDAEKSRIGLSIRQLEE 487
           G +HISEV+   V+ ++ +L EG  V   V+ V+ E+  + LS++++ +
Sbjct: 37  GYIHISEVATGWVKHIRSYLREGQRVVCKVIGVNPERKVVDLSLKRVNQ 85

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>RNR_BACSU (O32231) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein|
           homolog)
          Length = 779

 Score = 36.2 bits (82), Expect = 0.073
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
 Frame = +2

Query: 245 KIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQ-DVQDF-------- 397
           KIG  +DG++ SV ++G FV L        + GLVH+S ++ D  + D Q F        
Sbjct: 626 KIGEEFDGMISSVTNFGMFVELP-----NTIEGLVHVSFMTDDYYRFDEQHFAMIGERTG 680

Query: 398 --LTEGDTVKVIVVNVDAEKSRIGLSIRQLEEDP 493
                GD + V VV+V+ ++  I   I  ++  P
Sbjct: 681 NVFRIGDEITVKVVDVNKDERNIDFEIVGMKGTP 714

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>RNR_VIBPA (P40611) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein|
           homolog)
          Length = 835

 Score = 35.8 bits (81), Expect = 0.095
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 12/125 (9%)
 Frame = +2

Query: 134 DLVGSSVSVKVVEANEAEKKLVFSEKDASW-SLYSSQVKIGGIYDGIVGSVFHYGAFVHL 310
           D  G   S+    A++A +++      A W      Q  +G   +G++ +V  +G FV L
Sbjct: 618 DFYGEQCSMTERRADDATREV------ADWLKCEYMQDHVGDELEGVIANVTSFGFFVRL 671

Query: 311 QFPDGNYHLTGLVHISEVSWDLVQ-----------DVQDFLTEGDTVKVIVVNVDAEKSR 457
                + H+ GLVHIS ++ D  Q              +    GD VKV V+ V+ +  +
Sbjct: 672 T----DLHIDGLVHISTLANDYYQFDPIGQRLIGESFGNIYRLGDAVKVKVLAVNLDDKQ 727

Query: 458 IGLSI 472
           I   +
Sbjct: 728 IDFEL 732

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>BMP2K_HUMAN (Q9NSY1) BMP-2-inducible protein kinase (EC 2.7.11.1) (BIKe)|
          Length = 1161

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = -1

Query: 404 RLENLGHLGQDPKRPQRYVRDQ*DDNFHQEIAGEQMHHSGTLNQQFHHRYHQSLLEKSTM 225
           RL+ L    + P + Q+  + Q      Q+   +Q        QQ HH +H  LL+ + M
Sbjct: 447 RLQQLHLQHRHPHQQQQQQQQQ-----QQQQQQQQQQQQQQQQQQHHHHHHHHLLQDAYM 501

Query: 224 TNW-HPSQRRQAF---FLPHSLQRP 162
             + H +Q++Q     FL HS+ +P
Sbjct: 502 QQYQHATQQQQMLQQQFLMHSVYQP 526

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>GBF_DICDI (P36417) G-box-binding factor (GBF)|
          Length = 708

 Score = 33.5 bits (75), Expect = 0.47
 Identities = 20/81 (24%), Positives = 36/81 (44%)
 Frame = -1

Query: 386 HLGQDPKRPQRYVRDQ*DDNFHQEIAGEQMHHSGTLNQQFHHRYHQSLLEKSTMTNWHPS 207
           H  Q  ++PQ + + Q     HQ++  +Q HH     QQ H +     L++    +    
Sbjct: 139 HHQQQQQQPQHHQQMQ-QQQHHQQMQQQQQHHQQMQQQQHHQQMQHHQLQQHQHQHQQQQ 197

Query: 206 QRRQAFFLPHSLQRP*QKQRN 144
           Q++Q     H  Q+  Q+Q +
Sbjct: 198 QQQQHQQQHHQQQQQQQQQHH 218



 Score = 29.3 bits (64), Expect = 8.9
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = -1

Query: 377 QDPKRPQRYVRDQ*DDNFHQEIAGEQMHHSGTLNQQFHH------RYHQSLLEKSTMTNW 216
           Q  ++ Q + + Q     HQ++  +Q HH     QQ HH      ++HQ +       + 
Sbjct: 132 QQNQQQQHHQQQQQQPQHHQQMQQQQ-HHQQMQQQQQHHQQMQQQQHHQQMQHHQLQQHQ 190

Query: 215 HPSQRRQ 195
           H  Q++Q
Sbjct: 191 HQHQQQQ 197

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>R1AB_CVH22 (Q05002) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; 3C-like
            proteinase (EC 3.4
          Length = 6758

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 19/77 (24%), Positives = 38/77 (49%)
 Frame = +2

Query: 140  VGSSVSVKVVEANEAEKKLVFSEKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFP 319
            +G S+++KV E +  +K     ++ + W+++ + V        +VG + + G F    F 
Sbjct: 6620 IGGSIAIKVTEYSWNKKLYELVQRFSFWTMFCTSVNTSSSEAFVVG-INYLGDFAQGPFI 6678

Query: 320  DGNYHLTGLVHISEVSW 370
            DGN     ++H + V W
Sbjct: 6679 DGN-----IIHANYVFW 6690

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>VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contains: Von|
            Willebrand antigen II]
          Length = 2813

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
 Frame = +2

Query: 152  VSVKVVEANEAEK---KLVFSEKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFV---HLQ 313
            + V VVE ++  +   +L   ++ +     +SQ+K  G        V  Y  F     + 
Sbjct: 1314 IRVAVVEYHDGSRAYLELKARKRPSELRRITSQIKYTGSQVASTSEVLKYTLFQIFGKID 1373

Query: 314  FPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVNVD----AEKSRIGLSIRQL 481
             P+ + H+T L+  S+    + +++  ++      KVIV+ V     A   +I L  +Q 
Sbjct: 1374 RPEAS-HITLLLTASQEPPRMARNLVRYVQGLKKKKVIVIPVGIGPHASLKQIRLIEKQA 1432

Query: 482  EE---------DPLLETLDKIIPLEPDLSPDAEAASSPPEI 577
             E         D L +  D+I+    DL+P+A A + PP++
Sbjct: 1433 PENKAFLLSGVDELEQRRDEIVSYLCDLAPEAPAPTQPPQV 1473

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>PSAB_CHLRE (P09144) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)|
           (PSI-B)
          Length = 735

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 13/54 (24%)
 Frame = +2

Query: 248 IGGIYDGIVGSVFHYGAFVHLQ---------FPDG----NYHLTGLVHISEVSW 370
           +G ++  +V ++F +  ++HLQ         F D     N+HL+GL  +S ++W
Sbjct: 138 VGSVFLALVSAIFLFAGWLHLQPNFQPSLSWFKDAESRLNHHLSGLFGVSSLAW 191

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>RNR_VIBCH (Q9KNY1) Ribonuclease R (EC 3.1.-.-) (RNase R)|
          Length = 821

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
 Frame = +2

Query: 239 QVKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWD-----------LVQD 385
           Q  +G   +G+V +V  +G FV L       H+ GLVHIS ++ D           + + 
Sbjct: 648 QDHVGEELEGVVANVTSFGFFVRLT----ELHIDGLVHISTLANDYYHYDPIGQRLVGES 703

Query: 386 VQDFLTEGDTVKVIVVNVDAEKSRIGLSI 472
                  GD VKV V+ V+ +  +I   +
Sbjct: 704 FGAIYRLGDAVKVKVLAVNLDDRQIDFEL 732

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>NO40_MOUSE (Q9ESX4) Nucleolar protein of 40 kDa (pNO40) (Zinc finger CCHC|
           domain-containing protein 7) (Putative S1 RNA-binding
           domain protein) (PS1D protein)
          Length = 241

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +2

Query: 257 IYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVN 436
           I+ G V  V  YGAF+ +          GLVH + +S   V    + +  GD V V ++ 
Sbjct: 18  IFQGEVAMVTDYGAFIKIP----GCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIG 73

Query: 437 VDAEKSRIGLSI 472
            + +  RI +S+
Sbjct: 74  REMKNDRIKVSL 85

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>NO40_HUMAN (Q9NP64) Nucleolar protein of 40 kDa (pNO40) (Zinc finger CCHC|
           domain-containing protein 7) (Putative S1 RNA binding
           domain protein) (PS1D protein) (Pnn-interacting
           nucleolar protein)
          Length = 241

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +2

Query: 257 IYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVN 436
           I+ G V  V  YGAF+ +          GLVH + +S   V    + +  GD V V ++ 
Sbjct: 18  IFQGEVAMVTDYGAFIKIP----GCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIG 73

Query: 437 VDAEKSRIGLSI 472
            + +  RI +S+
Sbjct: 74  REMKNDRIKVSL 85

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>PSAB_CHLMO (P36492) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)|
           (PSI-B)
          Length = 735

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 13/53 (24%)
 Frame = +2

Query: 251 GGIYDGIVGSVFHYGAFVHLQ---------FPDG----NYHLTGLVHISEVSW 370
           G ++  +V +VF +  ++HLQ         F D     N+HL+GL  +S ++W
Sbjct: 139 GSVFLALVSAVFLFAGWLHLQPNFQPSLSWFKDAESRLNHHLSGLFGVSSLAW 191

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>Y1198_METJA (Q58598) Hypothetical protein MJ1198|
          Length = 761

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 27/95 (28%), Positives = 44/95 (46%)
 Frame = +2

Query: 242 VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVK 421
           V+ G  Y G+V  +  YGAF++L     N  + GL+       D++    + L  GD + 
Sbjct: 132 VEPGKFYKGVVTRIEKYGAFINL-----NEQVRGLLR----PRDMISLRLENLNVGDEII 182

Query: 422 VIVVNVDAEKSRIGLSIRQLEEDPLLETLDKIIPL 526
           V  ++V  EK  I      L    L++  +K +PL
Sbjct: 183 VQAIDVRPEKREIDFKYIPLTTYDLVK-YEKEVPL 216

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>HS21C_PEA (P09886) Small heat shock protein, chloroplast precursor|
          Length = 232

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 12  AQTPAGSSSSTTPCRASCPTLSSAPRIGVK 101
           +Q P  S  ST PC AS P     PR+G++
Sbjct: 16  SQKPGSSVKSTPPCMASFPLRRQLPRLGLR 45

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>FLHA_SALTY (P40729) Flagellar biosynthesis protein flhA|
          Length = 692

 Score = 26.6 bits (57), Expect(2) = 4.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 249 LVVSMMELLVQCSTMVHLFTCNFLMEIIISLVSYISLRSL 368
           L++SMM L +    +  LFT N  + I++ LV+  + R+L
Sbjct: 30  LILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69



 Score = 22.3 bits (46), Expect(2) = 4.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 418 QGHSGEC*CGEIKDRFVNQAIGGRSSAG 501
           +GH+G    G++ + F +  +GG  + G
Sbjct: 99  EGHTGAAAAGKVVEAFGHFLVGGNFAIG 126

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>FLHA_ECOLI (P76298) Flagellar biosynthesis protein flhA|
          Length = 692

 Score = 26.6 bits (57), Expect(2) = 4.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 249 LVVSMMELLVQCSTMVHLFTCNFLMEIIISLVSYISLRSL 368
           L++SMM L +    +  LFT N  + I++ LV+  + R+L
Sbjct: 30  LILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69



 Score = 22.3 bits (46), Expect(2) = 4.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 418 QGHSGEC*CGEIKDRFVNQAIGGRSSAG 501
           +GH+G    G++ + F +  +GG  + G
Sbjct: 99  EGHTGAAAAGKVVEAFGHFLVGGNFAIG 126

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>DNAJ1_NOCFA (Q5YZX0) Chaperone protein dnaJ 1|
          Length = 384

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 250 NLYLRRVQ*PTGILLREDKLFFCLIRFNDLDRNRGTY*VLCNILNGPFRIFTP 92
           +LY+  V+ P  + +R+     C IR   +D   GT  V+  IL+GP  +  P
Sbjct: 249 DLYVEIVEQPHDVFVRDGDDLHCTIRVPMVDAALGTTVVIDTILDGPTELTIP 301

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>DXS_CAMJE (Q9PIH8) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)|
           (1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
           (DXPS)
          Length = 615

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
 Frame = +2

Query: 158 VKVVEANEAEKKLV--FSEKDASWSLYSSQVKIGGIYDGIVGSVFHYGAFVHLQFPDGNY 331
           + ++ A   +++L+   ++K   W ++S  VKIGGI   I   +  Y   +H++     Y
Sbjct: 525 IDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINNFLQKYD--LHVKVVSFEY 582

Query: 332 HLTGLVH--ISEVSWDLVQDVQDFLTE 406
               + H   SEV  +L +DV   LT+
Sbjct: 583 EDKFIEHGKTSEVEKNLEKDVNSLLTK 609

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>CHS3_YEAST (P29465) Chitin synthase 3 (EC 2.4.1.16) (Chitin-UDP|
            acetyl-glucosaminyl transferase 3) (Class-IV chitin
            synthase 3)
          Length = 1165

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 223  VIVLFSSKDWWYL*WNCWF--SVPLWCICSPAIS*WKLSS-HWSRT 351
            +IV+ ++  W YL W C +  ++P+W    P+ + WK     W  T
Sbjct: 1072 LIVVITATRWSYLWWMCVYICALPIWNFVLPSYAYWKFDDFSWGDT 1117

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>RNR_UREPA (Q9PR88) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein|
           homolog)
          Length = 721

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
 Frame = +2

Query: 170 EANEAEKKLVFSEKDASWSLYSSQVK--IGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTG 343
           E+N+ E   V +E+D + + ++  +   IG  + G+V +V  +G FV L+       + G
Sbjct: 610 ESNKNEIIAVKTERDVNAAKFAEYMNLHIGKEFIGVVTTVSSFGVFVELE-----NTIEG 664

Query: 344 LVHISEVSWDLVQDVQDFLTEGDTV 418
           L+ I     +L  D  DF+ E  T+
Sbjct: 665 LIRIK----NLKDDFYDFIPENMTL 685

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>GSH1_NEUCR (Q8X0X0) Glutamate--cysteine ligase (EC 6.3.2.2)|
           (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS)
          Length = 728

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
 Frame = +2

Query: 308 LQFPDGNY--HLT---GLVHISEVSWDLVQDVQ-DFLTEGDTVKVIVVNVDAEKSRIGLS 469
           L +PD     HL    G+  + E+ W+  +  + D +  GD ++ +VVN   ++ ++ LS
Sbjct: 10  LDWPDAKQQAHLVRAWGIKQLLEI-WNKAKGKERDAMLWGDEIEYLVVNYSKDEPKVLLS 68

Query: 470 IRQLEEDPLLETL--DKIIPLEPDLSPDAEAASSPPEIEL 583
           +RQ +   +L+ L   K + +  D +P  EA +    + L
Sbjct: 69  LRQAD---ILKALADSKTLKVTGDCAPGTEANADAGNVTL 105

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>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
 Frame = -1

Query: 410  HLRLENL-GHLGQDPKRPQRYVRDQ*DDNFHQEIAGEQMHHSGTLNQQFHHRYHQSLLEK 234
            H++ + L G   Q    PQ  +  Q     HQ    +Q H+   LNQQ H + H +  + 
Sbjct: 3847 HMQQQQLHGQSQQITSAPQHQMHQQ-----HQAQQQQQHHNQQHLNQQLHAQQHPTQKQH 3901

Query: 233  STMTNWHPSQRRQAFFLPHSLQRP*QKQRNLLGPL*H 123
                 ++   ++      H +Q+  Q Q+  L    H
Sbjct: 3902 QAQQQFNQQIQQHQSQQQHQVQQQNQAQQQHLSQQQH 3938

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>PSAB_MASLA (O52475) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)|
          Length = 742

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 13/59 (22%)
 Frame = +2

Query: 233 SSQVKIGGIYDGIVGSVFHYGAFVHLQ-------------FPDGNYHLTGLVHISEVSW 370
           ++ + +G ++  I+ SVF +  ++HLQ              P  N+HL GL  +S ++W
Sbjct: 131 NNDLYMGAVFLLILASVFLFAGWLHLQPKFRPSLSWFKSAEPRLNHHLAGLFGVSSLAW 189

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>SRY_MOUSE (Q05738) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 395

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = -1

Query: 347 RDQ*DDNFHQEIAGEQMHHSGTLNQQFHHRYHQSLLEKSTMTNWHPSQRRQAFFLPHSLQ 168
           + Q  D+ HQ+   +Q H      QQFH  + Q          +H   ++Q  F  H  Q
Sbjct: 298 QQQFHDHHHQQQQKQQFHDHHQQKQQFHDHHQQK-------QQFHDHHQQQQQFHDHHQQ 350

Query: 167 RP*QKQR 147
           +  Q+Q+
Sbjct: 351 QQQQQQQ 357

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>FLHA_PROMI (Q51910) Flagellar biosynthesis protein flhA|
          Length = 696

 Score = 25.4 bits (54), Expect(2) = 8.4
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 249 LVVSMMELLVQCSTMVHLFTCNFLMEIIISLVSYISLRSL 368
           L++SMM L +    +  LFT N  + I++ LV+  + R+L
Sbjct: 30  LILSMMVLPLPPFLLDLLFTFNIALSIMVLLVAMFTRRTL 69



 Score = 22.3 bits (46), Expect(2) = 8.4
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 418 QGHSGEC*CGEIKDRFVNQAIGGRSSAG 501
           +GH+G    G + + F +  +GG  + G
Sbjct: 99  EGHTGSAAAGRVVEAFGHFLVGGNFAIG 126


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,633,407
Number of Sequences: 219361
Number of extensions: 1881387
Number of successful extensions: 6266
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 5855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6180
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result