>RDRP_BDV (P52639) Large structural protein (L protein) (P180) [Includes:|
           RNA-directed RNA polymerase (EC 2.7.7.48); mRNA
           (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA
           guanylyltransferase (EC 2.7.7.-)]
          Length = 1711

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 267 SCGFYGREVALRGASFPDWLSLV 335
           +C    R V LR A +PDWLSLV
Sbjct: 838 TCSLVNRVVKLRIAPYPDWLSLV 860

>RL4_PYRAE (Q8ZW51) 50S ribosomal protein L4P|
          Length = 283

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
 Frame = +2

Query: 137 AELHLLGPY--PLVRRAALPPSAAK----------GEGHSWRG**VRLIIAWVKEFLWFL 280
           A LH L P    L+RRA L   +A+          G+ HS     V L IA +  +   L
Sbjct: 44  APLHFLEPIRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVGLGIARIPRYKGSL 103

Query: 281 WPRSC 295
           WPR C
Sbjct: 104 WPRGC 108

>R13L1_ARATH (Q9LRR4) Putative disease resistance RPP13-like protein 1|
          Length = 1054

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
 Frame = +3

Query: 300 RGASFPDWLS------LVVARRREELGHPHCYSFPPLGVIP 404
           +G  FPDWLS      +V  R RE     +C S P LG +P
Sbjct: 776 KGRRFPDWLSDPSFSRIVCIRLRE---CQYCTSLPSLGQLP 813

>VST2_HEVPA (P33426) Structural protein 2 precursor|
          Length = 660

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 17/27 (62%), Positives = 19/27 (70%), Gaps = 4/27 (14%)
 Frame = +3

Query: 171 FAAPLSPLLP-QRGRDTH---GEASKY 239
           +AAPLSPLLP Q G +TH    EAS Y
Sbjct: 156 YAAPLSPLLPLQDGTNTHIMATEASNY 182

>VST2_HEVMY (Q04611) Structural protein 2 precursor|
          Length = 660

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 17/27 (62%), Positives = 19/27 (70%), Gaps = 4/27 (14%)
 Frame = +3

Query: 171 FAAPLSPLLP-QRGRDTH---GEASKY 239
           +AAPLSPLLP Q G +TH    EAS Y
Sbjct: 156 YAAPLSPLLPLQDGTNTHIMATEASNY 182

>VST2_HEVBU (P29326) Structural protein 2 precursor|
          Length = 660

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 17/27 (62%), Positives = 19/27 (70%), Gaps = 4/27 (14%)
 Frame = +3

Query: 171 FAAPLSPLLP-QRGRDTH---GEASKY 239
           +AAPLSPLLP Q G +TH    EAS Y
Sbjct: 156 YAAPLSPLLPLQDGTNTHIMATEASNY 182

>VST2_HEVRH (Q00270) Structural protein 2 (Fragment)|
          Length = 485

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 17/27 (62%), Positives = 19/27 (70%), Gaps = 4/27 (14%)
 Frame = +3

Query: 171 FAAPLSPLLP-QRGRDTH---GEASKY 239
           +AAPLSPLLP Q G +TH    EAS Y
Sbjct: 24  YAAPLSPLLPLQDGTNTHIMATEASNY 50

>TOPRS_DROME (Q9V8P9) Ubiquitin-protein E3 ligase Topors (EC 6.3.2.-)|
           (SUMO1-protein E3 ligase Topors) (Topoisomerase
           I-binding RING finger protein) (Topoisomerase I-binding
           arginine/serine-rich protein) (dTopors)
          Length = 1038

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 400 MTPSGGNE*QWGCPSSSRRRATTKLNQSGKEAPRRATS 287
           MTPS   + + GC +  RRR+ +  NQS + A   ++S
Sbjct: 819 MTPSPREDNEPGCSAPKRRRSCSHSNQSSQSASLASSS 856


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,930,343
Number of Sequences: 219361
Number of extensions: 1060854
Number of successful extensions: 2395
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2394
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)